NAME

    App::Fasops - operating blocked fasta files

SYNOPSIS

        fasops <command> [-?h] [long options...]
            -? -h --help    show help
    
        Available commands:
    
          commands: list the application's commands
              help: display a command's help screen
    
           axt2fas: convert axt to blocked fasta
            covers: scan blocked fasta files and output covers on chromosomes
             links: scan blocked fasta files and output links between pieces
           maf2fas: convert maf to blocked fasta
             names: scan blocked fasta files and output all species names
            refine: realign alignments
           replace: replace headers from a blocked fasta
          separate: separate blocked fasta files by species
             slice: extract alignment slices from a blocked fasta
             split: split blocked fasta files to separate per-alignment files
            subset: extract a subset of species from a blocked fasta

    See fasops commands for usage information.

AUTHOR

    Qiang Wang <wang-q@outlook.com>

COPYRIGHT AND LICENSE

    This software is copyright (c) 2014 by Qiang Wang.

    This is free software; you can redistribute it and/or modify it under
    the same terms as the Perl 5 programming language system itself.

