msrunreader.h File Reference

base interface to read MSrun files More...

#include <memory>
#include <map>
#include <QMutex>
#include "../trace/maptrace.h"
#include "msrunid.h"
#include "../massspectrum/qualifiedmassspectrum.h"
#include "../msfile/msfilereader.h"
#include "../exportinmportconfig.h"
#include "xiccoord/xiccoord.h"

Go to the source code of this file.

Classes
class	pappso::SpectrumCollectionHandlerInterface
	interface to collect spectrums from the MsRunReader class More...
class	pappso::MsRunSimpleStatistics
	example of interface to count MS levels of all spectrum in an MSrun More...
class	pappso::MsRunReaderScanNumberMultiMap
	provides a multimap to find quickly spectrum index from scan number More...
class	pappso::MsRunReaderRetentionTimeLine
	collect retention times along MS run More...
class	pappso::MsRunReaderTicChromatogram
	calculate a TIC chromatogram More...
class	pappso::MsRunReader
	base class to read MSrun the only way to build a MsRunReader object is to use the MsRunReaderFactory More...

Namespaces
	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge

Typedefs
typedef std::shared_ptr< MsRunReader >	pappso::MsRunReaderSPtr
typedef std::shared_ptr< const MsRunReader >	pappso::MsRunReaderCstSPtr

Functions
	Q_DECLARE_METATYPE (pappso::MsRunReaderSPtr)

Variables
class PMSPP_LIB_DECL	pappso::MsRunReader
int	msRunReaderSPtrMetaTypeId

Detailed Description

base interface to read MSrun files

Date

29/05/2018

Author

Olivier Langella

Definition in file msrunreader.h.

Function Documentation

Q_DECLARE_METATYPE()

Q_DECLARE_METATYPE

(

pappso::MsRunReaderSPtr

)

Variable Documentation

msRunReaderSPtrMetaTypeId

int msRunReaderSPtrMetaTypeId

extern

Definition at line 34 of file msrunreader.cpp.