pappso::TimsData Member List

This is the complete list of members for pappso::TimsData, including all inherited members.

fillFrameIdDescrList()	pappso::TimsData	private
fillSpectrumDescriptionWithSqlRecord(SpectrumDescr &spectrum_descr, QSqlQuery &qprecursor_list)	pappso::TimsData	private
getClosestPrecursorIdByMz(std::vector< std::vector< double >> ids, double mz_value)	pappso::TimsData	private
getMassSpectrumCstSPtr(std::size_t timsId, std::size_t scanNum)	pappso::TimsData
getMassSpectrumCstSPtrByRawIndex(std::size_t raw_index)	pappso::TimsData
getMatchPrecursorIdByKo(std::vector< std::vector< double >> ids, double ko_value)	pappso::TimsData	private
getMs2BuiltinCentroid() const	pappso::TimsData
getMsLevelBySpectrumIndex(std::size_t spectrum_index)	pappso::TimsData
getPrecursorsFromMzRtCharge(int charge, double mz_val, double rt_sec, double k0)	pappso::TimsData
getQualifiedMassSpectrumByRawIndex(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, std::size_t spectrum_index, bool want_binary_data)	pappso::TimsData
getQualifiedMs1MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, SpectrumDescr &spectrum_descr, bool want_binary_data)	pappso::TimsData
getQualifiedMs2MassSpectrumByPrecursorId(const MsRunIdCstSPtr &msrun_id, QualifiedMassSpectrum &mass_spectrum, SpectrumDescr &spectrum_descr, bool want_binary_data)	pappso::TimsData
getRawIndexFromCoordinate(std::size_t frame_id, std::size_t scan_num) const	pappso::TimsData	private
getRawMs2ByPrecursorId(std::size_t precursor_index)	pappso::TimsData
getRawMsBySpectrumIndex(std::size_t spectrum_index)	pappso::TimsData
getRetentionTimeLine() const	pappso::TimsData	virtual
getScanCoordinateFromRawIndex(std::size_t spectrum_index) const	pappso::TimsData	private
getSpectrumDescrWithPrecursorId(std::size_t precursor_id)	pappso::TimsData
getSpectrumDescrWithScanCoordinate(const std::pair< std::size_t, std::size_t > &scan_coordinate)	pappso::TimsData	private
getTicChromatogram()	pappso::TimsData
getTimsFrameBaseCstSPtr(std::size_t timsId)	pappso::TimsData	private
getTimsFrameBaseCstSPtrCached(std::size_t timsId)	pappso::TimsData	private
getTimsFrameCstSPtr(std::size_t timsId)	pappso::TimsData
getTimsFrameCstSPtrCached(std::size_t timsId)	pappso::TimsData	private
getTimsMS1FrameIdRange(double rt_begin, double rt_end) const	pappso::TimsData
getTotalNumberOfPrecursors() const	pappso::TimsData
getTotalNumberOfScans() const	pappso::TimsData
getXicCoordTimsFromPrecursorId(std::size_t precursor_id, PrecisionPtr precision_ptr)	pappso::TimsData
m_builtinMs2Centroid	pappso::TimsData	private
m_cacheSize	pappso::TimsData	private
m_frameIdDescrList	pappso::TimsData	private
m_mapFramesRecord	pappso::TimsData	private
m_mapMzCalibrationRecord	pappso::TimsData	private
m_mapTimsCalibrationRecord	pappso::TimsData	private
m_mapXicCoordRecord	pappso::TimsData	private
m_mutex	pappso::TimsData	private
m_thousandIndexToFrameIdDescrListIndex	pappso::TimsData	private
m_timsDataDirectory	pappso::TimsData	private
m_timsFrameBaseCache	pappso::TimsData	private
m_timsFrameCache	pappso::TimsData	private
m_totalNumberOfPrecursors	pappso::TimsData	private
m_totalNumberOfScans	pappso::TimsData	private
mcsp_ms1Filter	pappso::TimsData	private
mcsp_ms2Filter	pappso::TimsData	private
mpa_mzCalibrationStore	pappso::TimsData	private
mpa_timsBinDec	pappso::TimsData	private
ms2ReaderGenerateMS1MS2Spectrum(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, SpectrumDescr &spectrum_descr, unsigned int ms_level)	pappso::TimsData	private
ms2ReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level)	pappso::TimsData
openDatabaseConnection() const	pappso::TimsData	private
rawReaderSpectrumCollectionByMsLevel(const MsRunIdCstSPtr &msrun_id, SpectrumCollectionHandlerInterface &handler, unsigned int ms_level)	pappso::TimsData
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)	pappso::TimsData
setMs2BuiltinCentroid(bool centroid)	pappso::TimsData
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)	pappso::TimsData
TimsData(QDir timsDataDirectory)	pappso::TimsData
TimsData(const TimsData &other)	pappso::TimsData
~TimsData()	pappso::TimsData	virtual