#include <qcpxic.h>

Inheritance diagram for pappso::QCPXic:

Protected Member Functions
	QCPXic (XicWidget *parent)

	~QCPXic ()

void	clear ()

void	rescale ()

void	addXicP (const Xic *xic_p)

void	addMsMsEvent (const Xic *xic_p, pappso::pappso_double rt)

void	addXicPeakList (const Xic *xic_p, const std::vector< pappso::TracePeakCstSPtr > &xic_peak_list)

void	setName (const Xic *xic_p, const QString &name)

void	drawXicPeakBorders (unsigned int i, const Xic xic_p, const pappso::TracePeak p_xic_peak)

void	clearXicPeakBorders ()

virtual void	mouseMoveEvent (QMouseEvent *event) override

virtual void	mousePressEvent (QMouseEvent *event) override

virtual void	mouseReleaseEvent (QMouseEvent *event) override

virtual void	keyPressEvent (QKeyEvent *event) override

virtual void	keyReleaseEvent (QKeyEvent *event) override

Private Member Functions
Q_SLOT void	setRtRangeChanged (QCPRange range)

pappso::pappso_double	getRetentionTimeFromSecondsToLocal (pappso::pappso_double rt) const

pappso::pappso_double	xAxisToSeconds (pappso::pappso_double rt) const

Private Attributes
XicWidget *	_parent

QCPRange	_rt_range

QCPRange	_intensity_range

bool	_click = false

bool	_mouse_move = false

bool	_control_key = false

pappso::pappso_double	_old_x

pappso::pappso_double	_old_y

QCPItemTracer *	_current_ms2_event = nullptr

std::map< const Xic , QCPGraph >	_map_xic_graph

QColor	_graph_color

std::vector< QColor >	_colours

std::vector< QCPGraph * >	_graph_peak_surface_list

std::vector< QCPItemTracer * >	_graph_peak_border_list

Friends
class	XicWidget

Detailed Description

Definition at line 40 of file qcpxic.h.

Constructor & Destructor Documentation

◆ QCPXic()

QCPXic::QCPXic ( XicWidget * parent )

protected

Definition at line 38 of file qcpxic.cpp.

                                 : QCustomPlot(parent)
 {
   qDebug() << "QCPXic::QCPXic begin";
   _parent = parent;
   setFocusPolicy(Qt::ClickFocus);
  
   if(_parent->_rt_in_seconds)
     {
       xAxis->setLabel("retention time (sec)");
     }
   else
     {
       xAxis->setLabel("retention time (min)");
     }
  
   yAxis->setLabel("intensity");
   setInteractions(QCP::iRangeDrag | QCP::iRangeZoom);
   axisRect()->setRangeDrag(Qt::Horizontal);
   axisRect()->setRangeZoom(Qt::Horizontal);
  
   connect(this->xAxis,
           SIGNAL(rangeChanged(QCPRange)),
           this,
           SLOT(setRtRangeChanged(QCPRange)));
  
   //
   // http://tools.medialab.sciences-po.fr/iwanthue/
   _colours = {QColor(197, 89, 110),
               QColor(94, 185, 86),
               QColor(132, 95, 203),
               QColor(176, 175, 69),
               QColor(202, 72, 160),
               QColor(91, 126, 59),
               QColor(193, 126, 189),
               QColor(81, 183, 159),
               QColor(210, 77, 58),
               QColor(99, 137, 203),
               QColor(223, 147, 71),
               QColor(156, 105, 52)};
  
   qDebug() << "QCPXic::QCPXic end";
 }

References _colours, _parent, pappso::XicWidget::_rt_in_seconds, and setRtRangeChanged().

◆ ~QCPXic()

QCPXic::~QCPXic ( )

protected

Definition at line 80 of file qcpxic.cpp.

81 {

82 }

Member Function Documentation

◆ addMsMsEvent()

void QCPXic::addMsMsEvent	(	const Xic *	xic_p,
		pappso::pappso_double	rt
	)

protected

Definition at line 237 of file qcpxic.cpp.

 {
   _current_ms2_event = new QCPItemTracer(this);
   // itemDemoPhaseTracer = phaseTracer; // so we can access it later in the
   // bracketDataSlot for animation
  
   _current_ms2_event->setGraph(_map_xic_graph.at(xic_p));
   _current_ms2_event->setGraphKey(getRetentionTimeFromSecondsToLocal(rt));
   _current_ms2_event->setInterpolating(true);
   _current_ms2_event->setStyle(QCPItemTracer::tsCircle);
   _current_ms2_event->setPen(QPen(Qt::red));
   _current_ms2_event->setBrush(Qt::red);
   _current_ms2_event->setSize(7);
  
   // addItem(_current_ms2_event);
 }

References _current_ms2_event, _map_xic_graph, getRetentionTimeFromSecondsToLocal(), and pappso::rt.

Referenced by pappso::XicWidget::addMsMsEvent(), and pappso::XicWidget::replotAll().

◆ addXicP()

void QCPXic::addXicP ( const Xic * xic_p )

protected

Definition at line 183 of file qcpxic.cpp.

 {
  
   _graph_color = _colours[(int)(_map_xic_graph.size() % _colours.size())];
  
   QCPGraph *graph_xic = addGraph();
   graph_xic->setPen(QPen(_graph_color));
   _map_xic_graph.insert(std::pair<const Xic *, QCPGraph *>(xic_p, graph_xic));
   graph_xic->setScatterStyle(QCPScatterStyle(QCPScatterStyle::ssDisc, 2.0));
  
   if(xic_p->size() > 0)
     {
       for(const DataPoint &element : *xic_p)
         {
           graph_xic->addData(getRetentionTimeFromSecondsToLocal(element.x),
                              element.y);
         }
       if(_rt_range.lower > getRetentionTimeFromSecondsToLocal(xic_p->front().x))
         _rt_range.lower =
           getRetentionTimeFromSecondsToLocal(xic_p->front().x) - 1;
       if(_rt_range.upper < getRetentionTimeFromSecondsToLocal(xic_p->back().x))
         _rt_range.upper =
           getRetentionTimeFromSecondsToLocal(xic_p->back().x) + 1;
       _intensity_range.lower = 0;
       if(_intensity_range.upper < xic_p->maxYDataPoint().y)
         _intensity_range.upper = xic_p->maxYDataPoint().y;
     }
 }

References _colours, _graph_color, _intensity_range, _map_xic_graph, _rt_range, and getRetentionTimeFromSecondsToLocal().

Referenced by pappso::XicWidget::addXicSp(), and pappso::XicWidget::replotAll().

◆ addXicPeakList()

void QCPXic::addXicPeakList	(	const Xic *	xic_p,
		const std::vector< pappso::TracePeakCstSPtr > &	xic_peak_list
	)

protected

Definition at line 274 of file qcpxic.cpp.

 {
   for(const pappso::TracePeakCstSPtr &peak : xic_peak_list)
     {
       _graph_peak_surface_list.push_back(addGraph());
       for(auto &xic_element : *(xic_p))
         {
           if(peak.get()->containsRt(xic_element.x))
             {
               _graph_peak_surface_list.back()->addData(
                 getRetentionTimeFromSecondsToLocal(xic_element.x),
                 xic_element.y);
             }
         }
       // graph()->setData(rt_peak, intensity_peak);
       _graph_peak_surface_list.back()->removeFromLegend();
       _graph_peak_surface_list.back()->setChannelFillGraph(0);
       _graph_peak_surface_list.back()->setLineStyle(
         QCPGraph::LineStyle::lsLine);
       QColor color = _colours[_graph_peak_surface_list.size() % 12];
       color.setAlpha(0);
       // QColor(0, 110, 110, 30)
       _graph_peak_surface_list.back()->setPen(QPen(color));
       color.setAlpha(40);
       //_graph_peak_surface_list.back()->setScatterStyle(QCPScatterStyle::ssDot);
       _graph_peak_surface_list.back()->setBrush(QBrush(color));
     }
 }

References _colours, _graph_peak_surface_list, and getRetentionTimeFromSecondsToLocal().

Referenced by pappso::XicWidget::addXicPeakList(), and pappso::XicWidget::replotAll().

◆ clear()

void QCPXic::clear ( )

protected

Definition at line 263 of file qcpxic.cpp.

 {
   legend->clearItems();
   _map_xic_graph.clear();
   this->clearGraphs();
   this->clearItems();
   this->clearPlottables();
 }

References _map_xic_graph.

Referenced by pappso::XicWidget::clear(), and pappso::XicWidget::replotAll().

◆ clearXicPeakBorders()

void QCPXic::clearXicPeakBorders ( )

protected

Definition at line 393 of file qcpxic.cpp.

 {
   for(QCPItemTracer *p_tracer : _graph_peak_border_list)
     {
       removeItem(p_tracer);
       // delete p_tracer;
     }
   _graph_peak_border_list.clear();
   replot();
 }

References _graph_peak_border_list.

Referenced by pappso::XicWidget::clearXicPeakBorders().

◆ drawXicPeakBorders()

void QCPXic::drawXicPeakBorders	(	unsigned int	i,
		const Xic *	xic_p,
		const pappso::TracePeak *	p_xic_peak
	)

protected

Definition at line 331 of file qcpxic.cpp.

 {
   QCPGraph *p_graph = _map_xic_graph.at(xic_p);
   QColor color      = _colours[i % 12];
   // color.setAlpha(95);
  
   QCPItemTracer *p_peak_border_left = new QCPItemTracer(this);
   // itemDemoPhaseTracer = phaseTracer; // so we can access it later in the
   // bracketDataSlot for animation
   QPen border_pen(color);
   border_pen.setWidth(3);
  
   p_peak_border_left->setGraph(p_graph);
   p_peak_border_left->setGraphKey(
     getRetentionTimeFromSecondsToLocal(p_xic_peak->getLeftBoundary().x));
   p_peak_border_left->setInterpolating(true);
   p_peak_border_left->setStyle(QCPItemTracer::tsPlus);
   p_peak_border_left->setPen(border_pen);
   p_peak_border_left->setBrush(color);
   p_peak_border_left->setSize(30);
  
   _graph_peak_border_list.push_back(p_peak_border_left);
  
   // addItem(p_peak_border_left);
  
   QPen apex_pen(color);
   apex_pen.setWidth(2);
   p_peak_border_left = new QCPItemTracer(this);
   p_peak_border_left->setGraph(_map_xic_graph.at(xic_p));
   p_peak_border_left->setGraphKey(
     getRetentionTimeFromSecondsToLocal(p_xic_peak->getMaxXicElement().x));
   p_peak_border_left->setInterpolating(true);
   p_peak_border_left->setStyle(QCPItemTracer::tsPlus);
   p_peak_border_left->setPen(apex_pen);
   p_peak_border_left->setBrush(color);
   p_peak_border_left->setSize(8);
  
   _graph_peak_border_list.push_back(p_peak_border_left);
  
   // addItem(p_peak_border_left);
  
  
   p_peak_border_left = new QCPItemTracer(this);
   p_peak_border_left->setGraph(_map_xic_graph.at(xic_p));
   p_peak_border_left->setGraphKey(
     getRetentionTimeFromSecondsToLocal(p_xic_peak->getRightBoundary().x));
   p_peak_border_left->setInterpolating(true);
   p_peak_border_left->setStyle(QCPItemTracer::tsPlus);
   p_peak_border_left->setPen(border_pen);
   p_peak_border_left->setBrush(color);
   p_peak_border_left->setSize(30);
  
   _graph_peak_border_list.push_back(p_peak_border_left);
  
   // addItem(p_peak_border_left);
  
   replot();
 }

References _colours, _graph_peak_border_list, _map_xic_graph, pappso::TracePeak::getLeftBoundary(), pappso::TracePeak::getMaxXicElement(), getRetentionTimeFromSecondsToLocal(), pappso::TracePeak::getRightBoundary(), and pappso::DataPoint::x.

Referenced by pappso::XicWidget::drawXicPeakBorders().

◆ getRetentionTimeFromSecondsToLocal()

pappso::pappso_double QCPXic::getRetentionTimeFromSecondsToLocal ( pappso::pappso_double rt ) const

private

Definition at line 305 of file qcpxic.cpp.

 {
   if(_parent->_rt_in_seconds)
     {
       return rt;
     }
   else
     {
       return (rt / (pappso::pappso_double)60);
     }
 }

References _parent, pappso::XicWidget::_rt_in_seconds, and pappso::rt.

Referenced by addMsMsEvent(), addXicP(), addXicPeakList(), and drawXicPeakBorders().

◆ keyPressEvent()

void QCPXic::keyPressEvent ( QKeyEvent * event )

overrideprotectedvirtual

Definition at line 84 of file qcpxic.cpp.

 {
   if(event->key() == Qt::Key_Control)
     {
       _control_key = true;
     }
   qDebug() << "QCPXic::keyPressEvent end";
 }

References _control_key.

◆ keyReleaseEvent()

void QCPXic::keyReleaseEvent ( QKeyEvent * event )

overrideprotectedvirtual

Definition at line 94 of file qcpxic.cpp.

 {
   if(event->key() == Qt::Key_Control)
     {
       _control_key = false;
     }
   qDebug() << "QCPXic::keyReleaseEvent end";
 }

References _control_key.

◆ mouseMoveEvent()

void QCPXic::mouseMoveEvent ( QMouseEvent * event )

overrideprotectedvirtual

Definition at line 140 of file qcpxic.cpp.

 {
   _mouse_move             = true;
   pappso::pappso_double x = xAxis->pixelToCoord(event->x());
   if(_click)
     {
       qDebug() << "QCPXic::mouseMoveEvent begin "
                << xAxis->pixelToCoord(event->x()) << " "
                << yAxis->pixelToCoord(event->y());
       pappso::pappso_double y = yAxis->pixelToCoord(event->y());
       if(y < 0)
         {
           y = 0;
         }
       if(_control_key)
         {
           if(y > 0)
             {
               this->yAxis->scaleRange(_old_y / y, 0);
             }
         }
       else
         {
           this->xAxis->moveRange(xAxis->pixelToCoord(_old_x) -
                                  xAxis->pixelToCoord(event->x()));
         }
       _old_x = event->x();
       _old_y = y;
       replot();
       qDebug() << "QCPXic::mouseMoveEvent end";
     }
   else
     {
       if(_map_xic_graph.size() > 0)
         {
           // pappso::pappso_double mouse_mz_range = xAxis->pixelToCoord(10) -
           // xAxis->pixelToCoord(5); getNearestPeakBetween(x, mouse_mz_range);
           _parent->rtChangeEvent(xAxisToSeconds(x));
         }
     }
 }

References _click, _control_key, _map_xic_graph, _mouse_move, _old_x, _old_y, _parent, pappso::XicWidget::rtChangeEvent(), pappso::x, xAxisToSeconds(), and pappso::y.

◆ mousePressEvent()

void QCPXic::mousePressEvent ( QMouseEvent * event )

overrideprotectedvirtual

Definition at line 104 of file qcpxic.cpp.

 {
   qDebug() << "QCPXic::mousePressEvent begin "
            << xAxis->pixelToCoord(event->x()) << " "
            << yAxis->pixelToCoord(event->y());
   _mouse_move = false;
   _click      = true;
   _old_x      = event->x();
   _old_y      = yAxis->pixelToCoord(event->y());
   if(_old_y < 0)
     {
       _old_y = 0;
     }
   else
     {
     }
   qDebug() << "QCPXic::mousePressEvent end";
 }

References _click, _mouse_move, _old_x, and _old_y.

◆ mouseReleaseEvent()

void QCPXic::mouseReleaseEvent ( QMouseEvent * event )

overrideprotectedvirtual

Definition at line 123 of file qcpxic.cpp.

 {
   qDebug() << "QCPXic::mouseReleaseEvent begin "
            << xAxis->pixelToCoord(event->x()) << " "
            << yAxis->pixelToCoord(event->y());
   _click = false;
   if(_mouse_move)
     {
       _mouse_move = false;
     }
   else
     {
       _parent->xicClickEvent(xAxisToSeconds(_old_x), _old_y);
     }
   qDebug() << "QCPXic::mouseReleaseEvent end";
 }

References _click, _mouse_move, _old_x, _old_y, _parent, xAxisToSeconds(), and pappso::XicWidget::xicClickEvent().

◆ rescale()

void QCPXic::rescale ( )

protected

Definition at line 214 of file qcpxic.cpp.

215 {

216 }

Referenced by pappso::XicWidget::rescale().

◆ setName()

void QCPXic::setName	(	const Xic *	xic_p,
		const QString &	name
	)

protected

Definition at line 255 of file qcpxic.cpp.

 {
   _map_xic_graph.at(xic_p)->addToLegend();
   _map_xic_graph.at(xic_p)->setName(name);
 }

References _map_xic_graph.

Referenced by pappso::XicWidget::setName().

◆ setRtRangeChanged()

void QCPXic::setRtRangeChanged ( QCPRange range )

private

Definition at line 220 of file qcpxic.cpp.

 {
   qDebug() << "QCPXic::setMzRangeChanged _rt_range.lower" << _rt_range.lower;
   if(range.lower < _rt_range.lower)
     {
       range.lower = _rt_range.lower;
     }
   if(range.upper > _rt_range.upper)
     {
       range.upper = _rt_range.upper;
     }
  
   xAxis->setRange(range);
 }

References _rt_range.

Referenced by QCPXic().

◆ xAxisToSeconds()

pappso::pappso_double QCPXic::xAxisToSeconds ( pappso::pappso_double rt ) const

private

Definition at line 318 of file qcpxic.cpp.

 {
   if(_parent->_rt_in_seconds)
     {
       return rt;
     }
   else
     {
       return (rt * (pappso::pappso_double)60);
     }
 }

References _parent, pappso::XicWidget::_rt_in_seconds, and pappso::rt.

Referenced by mouseMoveEvent(), and mouseReleaseEvent().

Friends And Related Function Documentation

◆ XicWidget

friend class XicWidget

friend

Definition at line 44 of file qcpxic.h.

Member Data Documentation

◆ _click

bool pappso::QCPXic::_click = false

private

Definition at line 80 of file qcpxic.h.

Referenced by mouseMoveEvent(), mousePressEvent(), and mouseReleaseEvent().

◆ _colours

std::vector<QColor> pappso::QCPXic::_colours

private

Definition at line 88 of file qcpxic.h.

Referenced by QCPXic(), addXicP(), addXicPeakList(), and drawXicPeakBorders().

◆ _control_key

bool pappso::QCPXic::_control_key = false

private

Definition at line 82 of file qcpxic.h.

Referenced by keyPressEvent(), keyReleaseEvent(), and mouseMoveEvent().

◆ _current_ms2_event

QCPItemTracer* pappso::QCPXic::_current_ms2_event = nullptr

private

Definition at line 85 of file qcpxic.h.

Referenced by addMsMsEvent().

◆ _graph_color

QColor pappso::QCPXic::_graph_color

private

Definition at line 87 of file qcpxic.h.

Referenced by addXicP().

◆ _graph_peak_border_list

std::vector<QCPItemTracer *> pappso::QCPXic::_graph_peak_border_list

private

Definition at line 90 of file qcpxic.h.

Referenced by clearXicPeakBorders(), and drawXicPeakBorders().

◆ _graph_peak_surface_list

std::vector<QCPGraph *> pappso::QCPXic::_graph_peak_surface_list

private

Definition at line 89 of file qcpxic.h.

Referenced by addXicPeakList().

◆ _intensity_range

QCPRange pappso::QCPXic::_intensity_range

private

Definition at line 79 of file qcpxic.h.

Referenced by addXicP().

◆ _map_xic_graph

std::map<const Xic *, QCPGraph *> pappso::QCPXic::_map_xic_graph

private

Definition at line 86 of file qcpxic.h.

Referenced by addMsMsEvent(), addXicP(), clear(), drawXicPeakBorders(), mouseMoveEvent(), and setName().

◆ _mouse_move

bool pappso::QCPXic::_mouse_move = false

private

Definition at line 81 of file qcpxic.h.

Referenced by mouseMoveEvent(), mousePressEvent(), and mouseReleaseEvent().

◆ _old_x

pappso::pappso_double pappso::QCPXic::_old_x

private

Definition at line 83 of file qcpxic.h.

Referenced by mouseMoveEvent(), mousePressEvent(), and mouseReleaseEvent().

◆ _old_y

pappso::pappso_double pappso::QCPXic::_old_y

private

Definition at line 84 of file qcpxic.h.

Referenced by mouseMoveEvent(), mousePressEvent(), and mouseReleaseEvent().

◆ _parent

XicWidget* pappso::QCPXic::_parent

private

Definition at line 77 of file qcpxic.h.

Referenced by QCPXic(), getRetentionTimeFromSecondsToLocal(), mouseMoveEvent(), mouseReleaseEvent(), and xAxisToSeconds().

◆ _rt_range

QCPRange pappso::QCPXic::_rt_range

private

Definition at line 78 of file qcpxic.h.

Referenced by addXicP(), and setRtRangeChanged().

The documentation for this class was generated from the following files:

pappsomspp/widget/xicwidget/qcpxic.h
pappsomspp/widget/xicwidget/qcpxic.cpp

Protected Member Functions

Private Member Functions

Private Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

◆ QCPXic()

◆ ~QCPXic()

Member Function Documentation

◆ addMsMsEvent()

◆ addXicP()

◆ addXicPeakList()

◆ clear()

◆ clearXicPeakBorders()

◆ drawXicPeakBorders()

◆ getRetentionTimeFromSecondsToLocal()

◆ keyPressEvent()

◆ keyReleaseEvent()

◆ mouseMoveEvent()

◆ mousePressEvent()

◆ mouseReleaseEvent()

◆ rescale()

◆ setName()

◆ setRtRangeChanged()

◆ xAxisToSeconds()

Friends And Related Function Documentation

◆ XicWidget

Member Data Documentation

◆ _click

◆ _colours

◆ _control_key

◆ _current_ms2_event

◆ _graph_color

◆ _graph_peak_border_list

◆ _graph_peak_surface_list

◆ _intensity_range

◆ _map_xic_graph

◆ _mouse_move

◆ _old_x

◆ _old_y

◆ _parent

◆ _rt_range