##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag">
##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\"">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
##FILTER=<ID=q10,Description="Quality below 10">
##FILTER=<ID=test,Description="Testing filter">
##contig=<ID=1,assembly=b37,length=249250621>
##contig=<ID=2,assembly=b37,length=249250621>
##contig=<ID=3,assembly=b37,length=198022430>
##contig=<ID=4,assembly=b37,length=191154276>
##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta
##readme=AAAAAA
##readme=BBBBBB
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=STR,Number=1,Type=String,Description="Test string type">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=TXT,Number=.,Type=String,Description="Testing in INFO">
##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO">
##SAMPLE=<ID=NORMAL,SampleName=B,Description="Less-than (\"<\") and greater-than (\">\") quoting nonsense where double brackets would do just fine",softwareName=<Nonsense,Software>,softwareVer=<119,65>,softwareParam=<.>,MetadataResource=http://somewhere.com/path>
##FORMAT=<ID=STR,Number=1,Type=String,Description="Testing string in format">
##FILTER=<ID=q20,Description="Mapping quality below 20">
##INFO=<ID=INTA,Number=A,Type=Integer,Description="Testing Number=A in INFO">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	A	B	2:B	C	D
1	3000150	.	C	T	59.2	PASS	AN=4;AC=2	GT:GQ	0/1:245	0/1:245	./.:.	./.:.	./.:.
1	3000151	.	C	T	59.2	PASS	AN=4;AC=2	GT:DP:GQ	0/1:32:245	0/1:32:245	./.:.:.	./.:.:.	./.:.:.
1	3062915	idSNP	G	T,C,A	419	test;q20	TEST=5;STR=.;DP=14;DP4=3,6,9,12;INTA=2,1,.;AN=9;AC=2,2,1	GT:TT:GQ:DP:GL:STR	0/1:0,1,.:409:35:-20,-5,-20,-20,-5,-20,.,.,.,.:.	2:0,1,.:409:35:-20,-5,-20,.:.	0/3:.:376:14:-10,.,.,.,.,.,0,.,.,-10:ABC	0/2:1,0,.:409:35:-20,-20,-20,-5,-5,-20,.,.,.,.:.	0/1:1,0,.:409:35:-20,-20,-20,-5,-5,-20,.,.,.,.:.
1	3062915	id3D	GTTT	G	84.6	q10;q20	INDEL;STR=test;TXT=AA;DP=1013;DP4=6,7,8,9;AN=10;AC=5	GT:GQ:DP:GL	0/1:409:35:-20,-5,-20	0/1:409:35:-20,-5,-20	0/1:376:14:-10,0,-10	0/1:409:35:-20,-5,-20	0/1:409:35:-20,-5,-20
1	3062915	id1D;id2D	GTT	GT,G	999	q20;q10	DP=14;DP4=2,4,6,8;AN=6;AC=1,2	GT:GQ:DP:GL:STR	./.:.:.:.:.	./.:.:.:.:.	0/1:376:14:-10,0,-10,.,.,.:DEF	0/2:409:35:-20,.,.,-5,.,-20:.	0/2:409:35:-20,.,.,-5,.,-20:.
1	3106154	.	C	T	999	PASS	DP=15;AN=2;AC=1	GT:GQ:DP:GL	./.:.:.:.	./.:.:.:.	0/1:277:15:-10,0,-10	./.:.:.:.	./.:.:.:.
1	3106154	.	CAAAA	CA,C	342	PASS	DP=15;AN=6;AC=2,1	GT:GQ:DP:GL	0/1:245:32:.	0/1:245:32:.	0/2:277:15:-10,.,.,0,.,-10	.:245:32:.	./.:245:32:.
1	3106154	.	C	CT	459	PASS	AN=8;AC=4	GT:GQ:DP	0/1:245:32	0/1:245:32	./.:.:.	0/1:245:32	0/1:245:32
1	3157410	.	G	T	46.7	q10	AN=4;AC=4	GT:GQ:DP	./.:.:.	./.:.:.	./.:.:.	1/1:21:21	1/1:21:21
1	3157410	.	GAC	GC,G	90.6	PASS	DP=11;AN=6;AC=4,1	GT:GQ:DP	1/1:21:21	1/1:21:21	0/2:49:11	./.:.:.	./.:.:.
1	3162006	.	GAA	G,GA	238	PASS	DP=19;XRF=1e+06,2e+06,500000;XRI=1111,2222,5555;XRS=AAA,BBB,DDD;XAF=1e+06,500000;XAI=1111,5555;XAS=AAA,DDD;XGF=1e+06,2e+06,3e+06,500000,.,9e+09;XGI=1111,2222,3333,5555,.,9999;XGS=A,B,C,E,.,F;AN=10;AC=3,2	GT:GQ:DP	0/1:212:22	0/1:212:22	0/1:589:19	0/2:212:22	0/2:212:22
1	3177144	.	G	T	999	PASS	DP=24;AN=10;AC=3	GT:GQ:DP	0/0:150:30	1/1:150:30	0/1:236:24	0/0:150:30	0/0:150:30
1	3177144	.	GT	G	999	PASS	DP=24;AN=6;AC=1	GT:GQ:DP	0/0:150:30	0/0:150:30	0/1:236:24	./.:.:.	./.:.:.
1	3184885	.	TAAAA	TA,T	61.5	PASS	DP=16;AN=10;AC=5,4	GT:GQ:DP	1/2:12:10	1/2:12:10	0/1:435:16	1/2:12:10	1/2:12:10
2	3188209	.	GA	G	41.5	PASS	DP=15;AN=2;AC=1	GT:GQ:DP	./.:.:.	./.:.:.	0/1:162:15	./.:.:.	./.:.:.
2	3199812	.	G	GTT,GT	291	PASS	AN=8;AC=4,4	GT:GQ:DP	1/2:322:26	1/2:322:26	./.:.:.	1/2:322:26	1/2:322:26
3	3199812	.	GA	GTT,GT	17.5	PASS	DP=19;AN=2;AC=1,1	GT:GQ:DP	./.:.:.	./.:.:.	1/2:188:19	./.:.:.	./.:.:.
3	3212016	.	CTT	C,CT	79	PASS	AN=8;AC=4,4	GT:GQ:DP	1/2:91:26	1/2:91:26	./.:.:.	1/2:91:26	1/2:91:26
4	3212016	.	CTT	C	999	q20	DP=15;AN=2;AC=1	GT:GQ:DP	./.:.:.	./.:.:.	0/1:158:15	./.:.:.	./.:.:.
4	3258448	.	TACACACAC	T	.	PASS	AN=8;AC=4	GT:GQ:DP	0/1:325:31	0/1:325:31	./.:.:.	0/1:325:31	0/1:325:31
