search/configuration/detail.hpp

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// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause

 
#pragma once
 
#include <seqan3/core/configuration/detail/concept.hpp>
 
namespace seqan3::detail
{
 
// ----------------------------------------------------------------------------
// search_config_id
// ----------------------------------------------------------------------------

enum struct search_config_id : uint8_t
{
    max_error_total,                 
    max_error_substitution,          
    max_error_insertion,             
    max_error_deletion,              
    on_result,                       
    output_query_id,                 
    output_reference_id,             
    output_reference_begin_position, 
    output_index_cursor,             
    hit,                             
    parallel,                        
    result_type,                     
    // ATTENTION: Must always be the last item; will be used to determine the number of ids.
    SIZE 
};
 
// ----------------------------------------------------------------------------
// search_config_validation_matrix
// ----------------------------------------------------------------------------

template <>
inline constexpr std::array<std::array<bool, static_cast<uint8_t>(search_config_id::SIZE)>,
                            static_cast<uint8_t>(search_config_id::SIZE)>
    compatibility_table<search_config_id> = {{
        // max_error_total,
        // |  max_error_substitution,
        // |  |  max_error_insertion,
        // |  |  |  max_error_deletion,
        // |  |  |  |  on_result,
        // |  |  |  |  |  output_query_id,
        // |  |  |  |  |  |  output_reference_id,
        // |  |  |  |  |  |  |  output_reference_begin_position,
        // |  |  |  |  |  |  |  |  output_index_cursor,
        // |  |  |  |  |  |  |  |  |  hit,
        // |  |  |  |  |  |  |  |  |  |  parallel,
        // |  |  |  |  |  |  |  |  |  |  |  result_type
        {0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_total
        {1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_substitution
        {1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_insertion
        {1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1, 1}, // max_error_deletion
        {1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1, 1}, // on_result
        {1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1, 1}, // output_query_id
        {1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1, 1}, // output_reference_id
        {1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1, 1}, // output_reference_begin_position
        {1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1, 1}, // output_index_cursor
        {1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1, 1}, // hit
        {1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 1}, // parallel
        {1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 0}  // result_type
    }};
 
} // namespace seqan3::detail