concept.hpp File Reference

Core alphabet concept and free function/type trait wrappers. More...

#include <type_traits>
#include <seqan3/alphabet/exception.hpp>
#include <seqan3/core/concept/cereal.hpp>
#include <seqan3/core/detail/customisation_point.hpp>
#include <seqan3/utility/concept.hpp>
#include <seqan3/utility/detail/type_name_as_string.hpp>
#include <seqan3/utility/type_traits/basic.hpp>

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Classes
struct	seqan3::custom::alphabet< t >
	A type that can be specialised to provide customisation point implementations so that third party types model alphabet concepts. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::custom
	A namespace for third party and standard library specialisations of SeqAn customisation points.

Typedefs
template<typename alphabet_type>
using	seqan3::alphabet_char_t = decltype(seqan3::to_char(std::declval<alphabet_type const>()))
	The char_type of the alphabet; defined as the return type of seqan3::to_char.
template<typename semi_alphabet_type>
using	seqan3::alphabet_rank_t = decltype(seqan3::to_rank(std::declval<semi_alphabet_type>()))
	The rank_type of the semi-alphabet; defined as the return type of seqan3::to_rank. !

Variables
template<typename alph_t>
constexpr auto	seqan3::alphabet_size = detail::adl_only::alphabet_size_cpo<alph_t>{}()
	A type trait that holds the size of a (semi-)alphabet.
Function objects
constexpr auto	seqan3::assign_char_strictly_to = detail::adl_only::assign_char_strictly_to_fn{}
	Assign a character to an alphabet object, throw if the character is not valid.
constexpr auto	seqan3::assign_char_to = detail::adl_only::assign_char_to_cpo{}
	Assign a character to an alphabet object.
constexpr auto	seqan3::assign_rank_to = detail::adl_only::assign_rank_to_cpo{}
	Assign a rank to an alphabet object.
template<typename alph_t>
constexpr auto	seqan3::char_is_valid_for = detail::adl_only::char_is_valid_for_cpo<alph_t>{}
	Returns whether a character is in the valid set of a seqan3::alphabet (usually implies a bijective mapping to an alphabet value).
constexpr auto	seqan3::to_char = detail::adl_only::to_char_cpo{}
	Return the char representation of an alphabet object.
constexpr auto	seqan3::to_rank = detail::adl_only::to_rank_cpo{}
	Return the rank representation of a (semi-)alphabet object.

Detailed Description

Core alphabet concept and free function/type trait wrappers.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>