org.openscience.jmol.app.jmolpanel.JmolJME

All Implemented Interfaces:: KeyListener, MouseListener, MouseMotionListener, WindowListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, JmolDropEditor

public class JmolJME extends JME implements WindowListener, JmolDropEditor

ONLY for legacy Jmol, not for JmolD (which uses jme.jmeJmol

See Also:

Nested Class Summary

Nested classes/interfaces inherited from class JPanel
JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class JComponent
JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class Container
Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy
Field Summary

Fields inherited from class JME
afterClear, allHs, apointx, apointy, application, autoez, autonumber, bpointx, bpointy, bwMode, canonize, depict, depictBorder, doMenu, doTags, dyMode, embedded, infoText, jmeh, keepHydrogens, markUsed, mol, mols, mouseShift, movePossible, multipart, myFrame, newMolecule, nmols, nocenter, number, polarnitro, query, rButton, reaction, relativeStereo, revertStereo, runsmi, showAtomNumbers, showHydrogens, star, stereo, webme, writemi, writemol, writesmi, xButton

Fields inherited from class JComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class Component
accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
Constructor Summary

Constructors

Constructor

Description

JmolJME()
Method Summary

Modifier and Type

Method

Description

void

dispose()

void

from3D()

BufferedImage

getImage(int marginX, int marginY)

String

inchi()

void

loadContent(String script)

Deprecated.

void

loadFile(String fname)

When dropped, if the data are 2D, then read directly into JME.

static void

main(String[] args)

void

setFrameVisible(boolean b)

protected boolean

setMol(boolean checkMultipart)

void

setViewer(JFrame frame, Viewer vwr, Container parent)

String

smiles()

void

to3D(boolean isAppend)

protected void

toCDXML()

protected void

toMOL()

void

toPNG(String filename)

void

windowActivated(WindowEvent e)

void

windowClosed(WindowEvent e)

void

windowClosing(WindowEvent e)

void

windowDeactivated(WindowEvent e)

void

windowDeiconified(WindowEvent e)

void

windowIconified(WindowEvent e)

void

windowOpened(WindowEvent e)

Methods inherited from class JME
activateQuery, clear, doAction, doMouseAtomAction, doMouseBondAction, doNewMoleculeAction, getColor, getPreviousMolecule, hasPrevious, initialize, jmeFile, keyDown, keyPressed, keyReleased, keyTyped, molFile, mouseClicked, mouseDown, mouseDrag, mouseDragged, mouseEntered, mouseExited, mouseMove, mouseMoved, mousePressed, mouseReleased, mouseUp, nonisomericSmiles, options, paint, paintMolecularArea, ping, readMolecule, readMolFile, reset, setFrame, setSubstituent, setTemplate, setText, showAtomNumbers, start, stop, update, updateMark

Methods inherited from class JPanel
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class JComponent
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction

Methods inherited from class Container
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setMixingCutoutShape, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details
- JmolJME
  
  public JmolJME()
Method Details
- setViewer
  
  public void setViewer(JFrame frame, Viewer vwr, Container parent)
- toPNG
  
  public void toPNG(String filename)
- getImage
  
  public BufferedImage getImage(int marginX, int marginY)
- windowOpened
  
  public void windowOpened(WindowEvent e)
  
  Specified by:
  
  windowOpened in interface WindowListener
- windowClosing
  
  public void windowClosing(WindowEvent e)
  
  Specified by:
  
  windowClosing in interface WindowListener
- windowClosed
  
  public void windowClosed(WindowEvent e)
  
  Specified by:
  
  windowClosed in interface WindowListener
- windowIconified
  
  public void windowIconified(WindowEvent e)
  
  Specified by:
  
  windowIconified in interface WindowListener
- windowDeiconified
  
  public void windowDeiconified(WindowEvent e)
  
  Specified by:
  
  windowDeiconified in interface WindowListener
- windowActivated
  
  public void windowActivated(WindowEvent e)
  
  Specified by:
  
  windowActivated in interface WindowListener
- windowDeactivated
  
  public void windowDeactivated(WindowEvent e)
  
  Specified by:
  
  windowDeactivated in interface WindowListener
- dispose
  
  public void dispose()
- from3D
  
  public void from3D()
- smiles
  
  public String smiles()
  
  Overrides:
  
  smiles in class JME
- inchi
  
  public String inchi()
- to3D
  
  public void to3D(boolean isAppend)
- setFrameVisible
  
  public void setFrameVisible(boolean b)
- toMOL
  
  protected void toMOL()
- toCDXML
  
  protected void toCDXML()
- loadFile
  
  public void loadFile(String fname)
  
  When dropped, if the data are 2D, then read directly into JME. If 3D then transform via InChI to SMILES and then resolver to 2D.
  
  Specified by:
  
  loadFile in interface JmolDropEditor
- setMol
  
  protected boolean setMol(boolean checkMultipart)
  
  Overrides:
  
  setMol in class JME
- loadContent
  
  public void loadContent(String script)
  
  Description copied from interface: JmolDropEditor
  
  Deprecated. Designed to be used for dropping a script into the AppConsole or ScriptEditor in order to open it in the ScriptEditor, but that was never implemented.
  
  Specified by:
  
  loadContent in interface JmolDropEditor
  
  Parameters:
  
  script -
- main
  
  public static void main(String[] args)

Class JmolJME

Nested Class Summary

Nested classes/interfaces inherited from class JPanel

Nested classes/interfaces inherited from class JComponent

Nested classes/interfaces inherited from class Container

Nested classes/interfaces inherited from class Component

Field Summary

Fields inherited from class JME

Fields inherited from class JComponent

Fields inherited from class Component

Fields inherited from interface ImageObserver

Constructor Summary

Method Summary

Methods inherited from class JME

Methods inherited from class JPanel

Methods inherited from class JComponent

Methods inherited from class Container

Methods inherited from class Component

Methods inherited from class Object

Constructor Details

JmolJME

Method Details

setViewer

toPNG

getImage

windowOpened

windowClosing

windowClosed

windowIconified

windowDeiconified

windowActivated

windowDeactivated

dispose

from3D

smiles

inchi

to3D

setFrameVisible

toMOL

toCDXML

loadFile

setMol

loadContent

main