Class EnvelopeCalculation

java.lang.Object
org.jmol.geodesic.EnvelopeCalculation
All Implemented Interfaces:
JmolEnvCalc
public final class EnvelopeCalculation extends Object implements JmolEnvCalc

  • Constructor Details

    • EnvelopeCalculation

      public EnvelopeCalculation()

  • Method Details

    • set

      public EnvelopeCalculation set(AtomDataServer vwr, int ac, short[] mads)
      Specified by:
      set in interface JmolEnvCalc
      Parameters:
      vwr -
      ac -
      mads -
      Returns:
      this

    • getDotsConvexMaps

      public BS[] getDotsConvexMaps()

    • getDotsConvexMax

      public int getDotsConvexMax()

    • allocDotsConvexMaps

      public void allocDotsConvexMaps(int max)

    • getBsSurfaceClone

      public BS getBsSurfaceClone()
      Specified by:
      getBsSurfaceClone in interface JmolEnvCalc

    • setMads

      public void setMads(short[] mads)

    • setFromBits

      public void setFromBits(int index, BS bs)

    • newSet

      public void newSet()

    • reCalculate

      public void reCalculate(BS bs, M3 m)
      problem prior to 12.3.18 was that dots once on the deodesic were not being moved. this isn't perfect, but it's reasonably good. Mostly, you should recreate dots after rotateSelected. This isn't a problem until after a state is saved and reloaded, since only then with atomData.radiusData be null.
      Parameters:
      bs -
      m -

    • calculate

      public void calculate(RadiusData rd, float maxRadius, BS bsSelected, BS bsIgnore, boolean disregardNeighbors, boolean onlySelectedDots, boolean isSurface, boolean multiModel)
      Specified by:
      calculate in interface JmolEnvCalc
      Parameters:
      rd -
      maxRadius -
      bsSelected -
      bsIgnore -
      disregardNeighbors -
      onlySelectedDots -
      isSurface -
      multiModel -

    • getRadius

      public float getRadius(int atomIndex)

    • getPoints

      public P3[] getPoints()
      Specified by:
      getPoints in interface JmolEnvCalc

    • getAppropriateRadius

      public float getAppropriateRadius(int atomIndex)

    • deleteAtoms

      public void deleteAtoms(int firstAtomDeleted, int nAtomsDeleted)
      Parameters:
      firstAtomDeleted -
      nAtomsDeleted -