Uses of Class
org.jmol.adapter.smarter.XtalSymmetry.FileSymmetry
Packages that use XtalSymmetry.FileSymmetry
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Uses of XtalSymmetry.FileSymmetry in org.jmol.adapter.readers.cif
Methods in org.jmol.adapter.readers.cif that return XtalSymmetry.FileSymmetryModifier and TypeMethodDescriptionMSRdr.getAtomSymmetry(Atom a, XtalSymmetry.FileSymmetry defaultSymmetry) When applying symmetry, this method allows us to use a set of symmetry operators unique to this particular atom -- or in this case, to its subsystem.MSRdr.getSymmetryFromCode(String code) Methods in org.jmol.adapter.readers.cif with parameters of type XtalSymmetry.FileSymmetryModifier and TypeMethodDescriptionMSRdr.getAtomSymmetry(Atom a, XtalSymmetry.FileSymmetry defaultSymmetry) When applying symmetry, this method allows us to use a set of symmetry operators unique to this particular atom -- or in this case, to its subsystem.voidMSRdr.setModulation(boolean isPost, XtalSymmetry.FileSymmetry symmetry) Both the Jana reader and the CIF reader will call this to set the modulation for a given model. -
Uses of XtalSymmetry.FileSymmetry in org.jmol.adapter.smarter
Fields in org.jmol.adapter.smarter declared as XtalSymmetry.FileSymmetryMethods in org.jmol.adapter.smarter that return XtalSymmetry.FileSymmetryModifier and TypeMethodDescriptionAtomSetCollectionReader.applySymTrajASCR()MSInterface.getAtomSymmetry(Atom a, XtalSymmetry.FileSymmetry symmetry) XtalSymmetry.getBaseSymmetry()Get the symmetry that was in place prior to any supercell business.AtomSetCollection.getSymmetry()AtomSetCollectionReader.getSymmetry()XtalSymmetry.getSymmetry()MSInterface.getSymmetryFromCode(String spaceGroupOperationCode) AtomSetCollection.newFileSymmetry()XtalSymmetry.newFileSymmetry()AtomSetCollection.setSymmetryFromAuditBlock(XtalSymmetry.FileSymmetry symmetry) Methods in org.jmol.adapter.smarter with parameters of type XtalSymmetry.FileSymmetryModifier and TypeMethodDescriptionXtalSymmetry.addRotatedTensor(Atom a, Tensor t, int iSym, boolean reset, XtalSymmetry.FileSymmetry symmetry) MSInterface.getAtomSymmetry(Atom a, XtalSymmetry.FileSymmetry symmetry) voidMSInterface.setModulation(boolean isPost, XtalSymmetry.FileSymmetry symmetry) AtomSetCollection.setSymmetryFromAuditBlock(XtalSymmetry.FileSymmetry symmetry)