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Release: 2025_04 of 15-Oct-2025.


PROSITE is developed by the SIB Swiss Institute of Bioinformatics under the
responsibility of Alan Bridge.

This release was prepared by the PROSITE team: Delphine Baratin, Beatrice
Cuche, Edouard de Castro, Nicole Redaschi and Christian Sigrist.

See: http://prosite.expasy.org
Email: prosite@expasy.org

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Document name: prosite.lis
Content      : List of documentation entries

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This release of PROSITE contains 1956 documentation entries that describe
2714 motifs (1311 patterns and 1403 profiles/matrices).

 - The characters in positions 1 to 9 correspond to the documentation entry
   accession number.
 - The numerical characters in position 11 to 12 are used to indicate how
   many discriminators (profiles/matrices or patterns) are described by a
   documentation entry.

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PDOC51657  1  (+)RNA virus helicase core domain profile
PDOC00284  1  11-S plant seed storage proteins signature
PDOC00633  2  14-3-3 proteins signatures
PDOC00653  3  2'-5'-oligoadenylate synthases signatures and profile
PDOC00168  1  2-oxo acid dehydrogenases acyltransferase component lipoyl binding site
PDOC01048  1  2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature
PDOC00175  2  2Fe-2S ferredoxin-type iron-sulfur binding domain signature and profile
PDOC00065  1  3-hydroxyacyl-CoA dehydrogenase signature
PDOC00697  1  3-hydroxyisobutyrate dehydrogenase signature
PDOC00116  2  3'5'-cyclic nucleotide phosphodiesterase domain signature and profile
PDOC00997  1  4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature
PDOC01031  1  4-hydroxybenzoyl-CoA thioesterase family active site
PDOC00339  1  43 Kd postsynaptic protein signature
PDOC51656  1  4Fe-4S domain profile
PDOC00176  2  4Fe-4S ferredoxin-type iron-sulfur binding domain signature and profile
PDOC51674  1  4Fe-4S WhiB-like (Wbl)-type iron-sulfur binding domain profile
PDOC00627  2  5'-nucleotidase signatures
PDOC51701  1  6-Cysteine (6-Cys) domain profile
PDOC00390  1  6-phosphogluconate dehydrogenase signature
PDOC00759  2  6-pyruvoyl tetrahydropterin synthase signatures
PDOC00631  1  7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature
PDOC51893  1  A kinase-anchoring proteins AKAP-5 and AKAP-12 calmodulin (CaM)-binding motif profile
PDOC00572  1  AAA-protein family signature
PDOC51237  28 ABC transporter family profiles
PDOC00364  2  ABC transporter integral membrane type-1 domain profiles
PDOC00692  1  ABC transporter integral membrane type-2 domain profile
PDOC51426  1  ABL domain profile
PDOC51725  1  ABM domain profile
PDOC00826  2  Acetate and butyrate kinases family signatures
PDOC50980  2  Acetyl-coenzyme A carboxyltransferase domain profiles
PDOC00423  2  Aconitase family signatures
PDOC51671  2  ACT and ACT-like domain profiles
PDOC51772  1  Actin cross-linking (ACD) domain profile
PDOC00019  2  Actinin-type actin-binding domain signatures
PDOC00340  3  Actins signatures
PDOC00070  2  Acyl-CoA dehydrogenases signatures
PDOC00686  2  Acyl-CoA-binding (ACB) domain signature and profile
PDOC00136  3  Acylphosphatase-like domain signatures and profile
PDOC00402  2  Acyltransferases ChoActase / COT / CPT family signatures
PDOC52001  1  AD domain profile
PDOC50215  1  ADAM type metalloprotease domain profile
PDOC51533  1  ADD domain profile
PDOC00419  1  Adenosine and AMP deaminase signature
PDOC50141  1  Adenosine to inosine editase domain profile
PDOC00837  2  Adenylate cyclase class-I signatures
PDOC00104  1  Adenylate kinase signature
PDOC00444  2  Adenylosuccinate synthetase signatures
PDOC00297  1  ADF-H domain profile
PDOC00229  1  Adipokinetic hormone family signature
PDOC50974  1  AdoMet activation domain profile
PDOC51255  1  ADP-dependent kinase (ADPK) domain profile
PDOC00638  3  ADP-glucose pyrophosphorylase signatures
PDOC00642  1  Adrenodoxin family, iron-sulfur binding region signature
PDOC00247  1  Aerolysin type toxins signature
PDOC51285  1  AGC-kinase C-terminal domain profile
PDOC51641  1  Agenet-like domain profile
PDOC60024  2  Agouti domain signature and profile
PDOC51720  1  AIG1-type guanine nucleotide-binding (G) domain profile
PDOC00654  2  Alanine dehydrogenase and pyridine nucleotide transhydrogenase signatures
PDOC00332  1  Alanine racemase pyridoxal-phosphate attachment site
PDOC00186  2  Albumin domain signature and profile
PDOC00068  2  Aldehyde dehydrogenases active sites
PDOC00061  3  Aldo/keto reductase family signatures
PDOC00471  1  Aldose 1-epimerase putative active site
PDOC00113  1  Alkaline phosphatase active site
PDOC00447  1  Alkylbase DNA glycosidases alkA family signature
PDOC51697  1  ALOG domain profile
PDOC51325  1  Alpha box DNA-binding domain profile
PDOC52024  3  Alpha-, beta-, and gammaherpesvirus glycoprotein L (gL) domains profiles
PDOC00440  1  Alpha-2-macroglobulin family thiolester region signature
PDOC00146  2  Alpha-carbonic anhydrases signature and profile
PDOC00443  1  Alpha-galactosidase signature
PDOC00643  2  Alpha-isopropylmalate and homocitrate synthases signatures
PDOC00324  1  Alpha-L-fucosidase putative active site
PDOC51158  1  Alpha-type protein kinase domain profile
PDOC51690  1  Alphavirus core protein (CP) domain profile
PDOC51520  1  Alphavirus nsp2 protease (nsp2pro) domain profile
PDOC51743  1  Alphavirus-like methyltransferase (MT) domain profile
PDOC51895  1  Alt a 1 (AA1)-like domain profile
PDOC00494  1  Amidases signature
PDOC00009  1  Amidation site
PDOC00926  1  Amiloride-sensitive sodium channels signature
PDOC00191  1  Amino acid permeases signature
PDOC00161  1  Aminoacyl-transfer RNA synthetases class-I signature
PDOC00363  3  Aminoacyl-transfer RNA synthetases class-II profiles
PDOC00417  1  Aminopeptidase P and proline dipeptidase signature
PDOC00098  1  Aminotransferases class-I pyridoxal-phosphate attachment site
PDOC00518  1  Aminotransferases class-II pyridoxal-phosphate attachment site
PDOC00519  1  Aminotransferases class-III pyridoxal-phosphate attachment site
PDOC00618  1  Aminotransferases class-IV signature
PDOC00514  1  Aminotransferases class-V pyridoxal-phosphate attachment site
PDOC51112  1  AMMECR1 domain profile
PDOC00937  1  Ammonium transporters signature
PDOC50856  1  AMOP domain profile
PDOC00906  2  Anaphylatoxin domain signature and profile
PDOC00192  2  Anion exchangers family signatures
PDOC50088  2  Ankyrin repeat and ankyrin repeat region profiles
PDOC00195  2  Annexin repeat signature and profile
PDOC50921  1  ANTAR domain profile
PDOC00748  2  Antenna complexes alpha and beta subunits signatures
PDOC51995  1  Anthrax toxin lethal factor (ATLF)-like domain profile
PDOC50844  1  Antifreeze protein-like domain profile
PDOC51252  1  Antistasin-like domain profile
PDOC00598  4  AP endonucleases family 1 signatures and profile
PDOC00599  4  AP endonucleases family 2 signatures and profile
PDOC51032  1  AP2/ERF domain profile
PDOC51087  1  ApaG domain profile
PDOC51887  1  Aphthovirus leader protease (L(pro)) domain profile
PDOC51499  1  APO domain profile
PDOC00829  6  Apoptosis regulator proteins, Bcl-2 family BH motifs signatures/profiles
PDOC00204  4  APP E1 and E2 domains profiles and CuBD and intracellular domains signatures
PDOC51299  1  APSES-type HTH DNA-binding domain profile
PDOC51901  1  Archaeal CBS proteins (ACP)-type metal binding (MB) domain profile
PDOC50115  1  ARF GTPase-activating proteins domain profile
PDOC50870  1  Arfaptin homology (AH) domain profile
PDOC00613  2  ArgE / dapE / ACY1 / CPG2 / yscS family signatures
PDOC00135  2  Arginase family signature and profile
PDOC00488  2  Argininosuccinate synthase signatures
PDOC51011  1  ARID domain profile
PDOC50176  1  Armadillo/plakoglobin ARM repeat profile
PDOC00513  1  Aromatic amino acids permeases signature
PDOC00267  1  Arrestins signature
PDOC51353  1  Arsenate reductase arsC family profile
PDOC00661  2  ArsR-type HTH domain signature and profile
PDOC51961  1  Arterivirus Nsp11 N-terminal/coronavirus NSP15 middle (AV-Nsp11N/CoV-Nsp15M) domain profile
PDOC51538  1  Arterivirus nsp2 cysteine protease (AV CP) domain profile
PDOC51493  1  Arterivirus nsp4 proteinase domain profile
PDOC51539  2  Arterivirus papain-like cysteine protease alpha and beta (PCPalpha and PCPbeta) domain profiles
PDOC00963  1  Arthropod CHH/MIH/GIH neurohormones family signature
PDOC00184  2  Arthropod hemocyanins / insect LSPs signatures
PDOC51306  2  ASD1 and ASD2 domains profiles
PDOC00520  2  AsnC-type HTH domain signature and profile
PDOC00132  3  Asparaginase / glutaminase active sites signatures and domain profile
PDOC00714  2  Aspartate and glutamate racemases signatures
PDOC00091  1  Aspartate and ornithine carbamoyltransferases signature
PDOC00847  1  Aspartate-semialdehyde dehydrogenase signature
PDOC00010  1  Aspartic acid and asparagine hydroxylation site
PDOC00289  1  Aspartokinase signature
PDOC00657  2  Aspartyl proteases, omptin family signatures
PDOC60010  1  Assassin bug toxin signature
PDOC51864  1  Astacin-like domain profile
PDOC00932  1  ATP P2X receptors signature
PDOC01020  1  ATP phosphoribosyltransferase signature
PDOC00420  1  ATP synthase a subunit signature
PDOC00137  1  ATP synthase alpha and beta subunits signature
PDOC00526  1  ATP synthase c subunit signature
PDOC00327  1  ATP synthase delta (OSCP) subunit signature
PDOC00138  1  ATP synthase gamma subunit signature
PDOC00185  2  ATP-binding cassette, ABC transporter-type, signature and profile
PDOC00335  3  ATP-citrate lyase / succinyl-CoA ligases signatures
PDOC51161  1  ATP-cone domain profile
PDOC00295  3  ATP-dependent DNA ligase signatures and profile
PDOC00803  1  ATP-dependent serine proteases, lon family, serine active site
PDOC50975  1  ATP-grasp domain profile
PDOC00017  1  ATP/GTP-binding site motif A (P-loop)
PDOC00731  2  Autoinducer synthase family signature and profile
PDOC51208  1  Autotransporter beta-domain profile
PDOC00499  2  Avidin-like domain signature and profile
PDOC51215  1  AWS domain profile
PDOC51148  1  AXH domain profile
PDOC51332  2  B12-binding and B12-binding N-terminal domain profiles
PDOC50863  1  B3 DNA-binding domain profile
PDOC50188  1  B30.2/SPRY domain profile
PDOC51483  1  B5 domain profile
PDOC00465  2  Bacterial chemotaxis sensory transducers signature and profile
PDOC00763  1  Bacterial export FHIPEP family signature
PDOC00796  1  Bacterial extracellular solute-binding proteins, family 1 signature
PDOC00798  1  Bacterial extracellular solute-binding proteins, family 3 signature
PDOC00799  1  Bacterial extracellular solute-binding proteins, family 5 signature
PDOC00044  1  Bacterial histone-like DNA-binding proteins signature
PDOC00283  1  Bacterial ice-nucleation proteins octamer repeat
PDOC52055  1  Bacterial ISG15-like (Bil) ubiquitin-like domain profile
PDOC00397  1  Bacterial luciferase subunits signature
PDOC00876  3  Bacterial microcompartment (BMC) domain signature and profile and BMC circularly permuted domain profile
PDOC51932  1  Bacterial microcompartment vertex (BMV) domain profile
PDOC00375  2  Bacterial quinoprotein dehydrogenases signatures
PDOC00040  2  Bacterial regulatory proteins, araC family signature and profile
PDOC52059  1  Bacterial Rho GTPase-activating protein (GAP) domain profile
PDOC00291  2  Bacterial rhodopsins signatures
PDOC00558  1  Bacterial ribonuclease P protein component signature
PDOC00493  1  Bacterial ring hydroxylating dioxygenases alpha-subunit signature
PDOC00878  1  Bacterial type II secretion system protein C signature
PDOC00683  1  Bacterial type II secretion system protein D signature
PDOC00567  1  Bacterial type II secretion system protein E signature
PDOC00682  1  Bacterial type II secretion system protein F signature
PDOC00879  1  Bacterial type II secretion system protein N signature
PDOC00755  1  Bacterial-type phytoene dehydrogenase signature
PDOC60030  1  Bacteriocin class IIa family signature
PDOC00475  1  Bacterioferritin signature
PDOC00410  2  Bacteriophage-type RNA polymerase family active site signatures
PDOC51035  1  BAG domain profile
PDOC51038  1  BAH domain profile
PDOC00977  1  Band 7 protein family signature
PDOC51021  1  BAR domain profile
PDOC00619  3  Barwin domain signatures and profile
PDOC00036  2  Basic-leucine zipper (bZIP) domain signature and profile
PDOC00957  1  Bax inhibitor-1 family signature
PDOC01007  1  BCCT family of transporters signature
PDOC50197  1  BEACH domain profile
PDOC51783  1  BEACH-type PH domain profile
PDOC51457  1  BEN domain profile
PDOC51031  1  BESS domain profile
PDOC00414  2  Beta-amylase active sites
PDOC00667  1  Beta-eliminating lyases pyridoxal-phosphate attachment site
PDOC00606  2  Beta-lactamases class B signatures
PDOC00134  3  Beta-lactamases classes -A, -C, and -D active site
PDOC51662  1  Beta-propeller phytase (BPP) domain profile
PDOC51942  1  Betacoronavirus Nsp3c-C domain profile
PDOC51994  1  Betacoronavirus Nsp3e group 2-specific marker (G2M) domain profile
PDOC51945  1  Betacoronavirus Nsp3e nucleic acid-binding (NAB) domain profile
PDOC51921  1  Betacoronavirus spike (S) glycoprotein S1 subunit C-terminal (CTD) domain profile
PDOC51922  1  Betacoronavirus spike (S) glycoprotein S1 subunit N-terminal (NTD) domain profile
PDOC51862  1  BetaSPN-type cysteine-stabilized alpha/beta (CS-alpha/beta) domain profile
PDOC51658  1  Bifunctional nuclease (BFN) domain profile
PDOC51127  1  Big-1 (bacterial Ig-like domain 1) domain profile
PDOC51515  1  Bin3-type S-adenosyl-L-methionine (SAM) domain profile
PDOC50979  1  Biotin carboxylation (BC) domain profile
PDOC00167  1  Biotin-requiring enzymes attachment site
PDOC51733  1  Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile
PDOC50968  1  Biotinyl/lipoyl domain profile
PDOC00015  1  Bipartite nuclear localization signal profile
PDOC00987  2  BIR repeat signature and profile
PDOC51548  1  Birnavirus VP4 protease domain profile
PDOC50925  1  BLUF domain profile
PDOC51848  1  bMERB domain profile
PDOC51714  1  Bms1-type guanine nucleotide-binding (G) domain profile
PDOC00230  1  Bombesin-like peptides family signature
PDOC50914  1  BON domain profile
PDOC00253  1  Bowman-Birk serine protease inhibitors family signature
PDOC50138  1  BRCA2 repeat profile
PDOC50172  1  BRCT domain profile
PDOC50869  1  BRICHOS domain profile
PDOC50833  1  Brix domain profile
PDOC51750  1  Bro-N domain profile
PDOC51180  1  BRO1 domain profile
PDOC00550  2  Bromodomain (BrD) signature and profile
PDOC51514  1  BRX domain profile
PDOC50858  1  BSD domain profile
PDOC50097  1  BTB domain profile
PDOC00742  2  BTG family signatures
PDOC51489  1  BUB1 N-terminal domain profile
PDOC51279  1  Bucentaur C-terminal (BCNT-C) domain profile
PDOC50927  1  Bulb-type lectin domain profile
PDOC51277  1  BURP domain profile
PDOC00089  2  C-5 cytosine-specific DNA methylases signatures
PDOC51329  1  C-CAP/cofactor C-like domain profile
PDOC00912  2  C-terminal cystine knot domain signature and profile
PDOC00169  4  C-type cytochrome superfamily profiles
PDOC00537  2  C-type lectin domain signature and profile
PDOC00857  1  C1q domain profile
PDOC51911  1  C2 Aida-type domain profile
PDOC51381  1  C2 B9-type domain profile
PDOC51650  2  C2 DOCK-type and DOCKER domains profiles
PDOC00380  1  C2 domain profile
PDOC51840  1  C2 NT-type domain profile
PDOC51547  1  C2 phosphatidylinositol 3-kinase (PI3K)-type domain profile
PDOC00205  2  Cadherin domain signature and profile
PDOC00231  1  Calcitonin / CGRP / IAPP family signature
PDOC00913  1  Calcium-binding EGF-like domain signature
PDOC51894  1  Caliciviridae (CV) 3C-like protease (3CLpro) domain profile
PDOC50021  1  Calponin homology (CH) domain profile
PDOC00808  2  Calponin-like repeat signature and profile
PDOC00636  3  Calreticulin family signatures
PDOC00675  2  Calsequestrin signatures
PDOC00530  1  cAMP phosphodiesterases class-II signature
PDOC00004  1  cAMP- and cGMP-dependent protein kinase phosphorylation site
PDOC00835  2  CAP protein signatures
PDOC00660  2  CAP-Gly domain signature and profile
PDOC00676  2  Carbamoyl-phosphate synthase subdomain signatures
PDOC51759  1  Carbohydrate-binding module 15 (CBM15) domain profile
PDOC50263  1  Carbon-nitrogen hydrolase domain profile
PDOC00112  2  Carboxylesterases type-B signatures
PDOC50209  1  CARD caspase recruitment domain profile
PDOC00012  2  Carrier protein (CP) domain profile and phosphopantetheine attachment site signature
PDOC51749  1  Cas9-type HNH domain profile
PDOC00006  1  Casein kinase II phosphorylation site
PDOC00845  1  Casein kinase II regulatory subunit signature
PDOC00277  1  Caseins alpha/beta signature
PDOC00864  4  Caspase family signatures and profiles
PDOC00395  3  Catalase signatures and profile
PDOC00729  2  Cathelicidins signatures
PDOC00930  1  Caveolins signature
PDOC51506  1  Cbl-type phosphotyrosine-binding (Cbl-PTB) domain profile
PDOC00486  2  CBM1 (Carbohydrate-binding type-1) domain signature and profile
PDOC51763  1  CBM10 (carbohydrate binding type-10) domain profile
PDOC00485  2  CBM2 (carbohydrate-binding type-2) domain signature and profile
PDOC51166  1  CBM20 (carbohydrate binding type-20) domain profile
PDOC51159  1  CBM21 (carbohydrate binding type-21) domain profile
PDOC51172  1  CBM3 (carbohydrate binding type-3) domain profile
PDOC51969  1  CBM39 (carbohydrate binding type-39) domain profile
PDOC52005  1  CBM56 (carbohydrate binding type-56) domain profile
PDOC51175  1  CBM6 (carbohydrate binding type-6) domain profile
PDOC51727  1  CBP/p300-type histone acetyltransferase (HAT) domain profile
PDOC51371  1  CBS domain profile
PDOC51017  1  CCT domain profile
PDOC00321  1  CDP-alcohol phosphatidyltransferases signature
PDOC00241  1  Cecropin family signature
PDOC00016  1  Cell attachment sequence
PDOC00352  1  Cell cycle proteins ftsW / rodA / spoVE signature
PDOC51170  1  Cell wall-binding repeat profile
PDOC51891  1  CENP-V/GFA domain profile
PDOC51253  1  CENPB-type HTH domain profile
PDOC00350  1  Cereal trypsin/alpha-amylase inhibitors family signature
PDOC52012  1  CFEM domain profile
PDOC51437  1  CG-1 DNA-binding domain profile
PDOC51771  1  CGT/MARTX cysteine protease (CPD) domain profile
PDOC51708  1  CHAD domain profile
PDOC00403  1  Chalcone and stilbene synthases active site
PDOC00249  1  Channel forming colicins signature
PDOC50911  1  CHAP domain profile
PDOC00679  2  Chaperonins clpA/B signatures
PDOC00576  1  Chaperonins cpn10 signature
PDOC00268  1  Chaperonins cpn60 signature
PDOC00610  3  Chaperonins TCP-1 signatures
PDOC51884  1  Chaplin domain profile
PDOC50839  1  CHASE domain profile
PDOC50122  1  CheB-type methylesterase domain profile
PDOC50123  1  CheR-type methyltransferase profile
PDOC50851  1  CheW-like domain profile
PDOC00206  2  Chitin-binding type R&R domain signature and profile
PDOC00025  2  Chitin-binding type-1 domain signature and profile
PDOC50940  1  Chitin-binding type-2 domain profile
PDOC00620  2  Chitinases family 19 signatures
PDOC60000  1  Chitosanases families 46 and 80 active sites signature
PDOC00093  1  Chloramphenicol acetyltransferase active site
PDOC51401  1  CHORD domain profile
PDOC51167  3  Chorismate mutase domains profiles
PDOC00628  3  Chorismate synthase signatures
PDOC50933  1  CHRD domain profile
PDOC00517  2  Chromo domain signature and profile
PDOC51391  1  CID domain profile
PDOC51135  1  CIDE-N domain profile
PDOC51721  1  Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile
PDOC00422  1  Citrate synthase signature
PDOC50219  1  Citron homology (CNH) domain profile
PDOC51508  1  CKK domain profile
PDOC00891  1  Class A bacterial acid phosphatases signature
PDOC51757  1  Class I myosin tail homology (TH1) domain profile
PDOC51555  36 Class I SAM-dependent methyltransferases family profiles
PDOC51604  3  Class IV SAM-dependent methyltransferases family profiles
PDOC51565  17 Class V SAM-dependent methyltransferases family profiles
PDOC51598  3  Class VI SAM-dependent methyltransferases family profiles
PDOC00761  2  Clathrin adaptor complexes medium chain signatures
PDOC00760  1  Clathrin adaptor complexes small chain signature
PDOC50236  1  Clathrin heavy-chain (CHCR) repeat profile
PDOC00196  2  Clathrin light chains signatures
PDOC01045  1  Claudin family signature
PDOC51888  1  Clip domain profile
PDOC00416  1  Clostridium cellulosome enzymes repeated domain signature
PDOC51903  1  Clp repeat (R) domain profile
PDOC51902  1  ClpX zinc binding (ZB) domain profile
PDOC51823  1  Clueless (Clu) domain profile
PDOC00431  2  Clusterin signatures
PDOC51846  1  CNNM transmembrane domain profile
PDOC00988  3  Coagulation factors 5/8 type C domain (FA58C) signatures and profile
PDOC51274  1  CobBQ-type GATase domain profile
PDOC01044  1  COE family signature
PDOC00980  2  Coenzyme A transferases signatures
PDOC51808  1  Coiled coil-helix-coiled coil-helix (CHCH) domain profile
PDOC00304  2  Cold-shock (CSD) domain profile
PDOC00111  2  Colipase family signature and profile
PDOC51403  1  Collagen IV carboxyl-terminal non-collagenous (NC1) domain profile
PDOC52010  1  Collectrin-like domain profile
PDOC51269  1  COMM domain profile
PDOC51982  1  COMPASS (CMP) domain profile
PDOC60025  1  Conantokin family signature
PDOC00341  2  Connexins signatures
PDOC60004  5  Conotoxin families signatures
PDOC60027  1  Contryphan family signature
PDOC00895  2  Copper amine oxidase signatures
PDOC00080  2  Copper type II, ascorbate-dependent monooxygenases signatures
PDOC00863  2  Copper-fist DNA-binding domain signature and profile
PDOC00082  2  Copper/Zinc superoxide dismutase signatures
PDOC00783  1  Coproporphyrinogen III oxidase signature
PDOC51900  1  Core-binding (CB) domain profile
PDOC01042  1  Cornichon family signature
PDOC51966  2  Coronavirus (CoV) 3a-like viroporin transmembrane (TM) and cytosolic (CD) domains profiles
PDOC51952  1  Coronavirus (CoV) ExoN/MTase coactivator domain profile
PDOC51954  1  Coronavirus (CoV) guanine-N7-methyltransferase (N7-MTase) domain profile
PDOC51962  2  Coronavirus (CoV) Nsp1 globular and Betacoronavirus (BetaCoV) Nsp1 C-terminal domains profiles
PDOC51960  1  Coronavirus (CoV) Nsp15 N-terminal oligomerization domain profile
PDOC51989  3  Coronavirus (CoV) Nsp2 N-terminal, middle and C-terminal domains profiles
PDOC51992  1  Coronavirus (CoV) Nsp3 Y domain profile
PDOC51951  1  Coronavirus (CoV) Nsp9 ssRNA-binding domain profile
PDOC51993  1  Coronavirus 3Ecto domain profile
PDOC51926  1  Coronavirus envelope (CoV E) protein profile
PDOC51442  1  Coronavirus main protease (M-pro) domain profile
PDOC51927  1  Coronavirus membrane (CoV M) protein profile
PDOC51948  4  Coronavirus Nsp12 Interface and RNA-dependent RNA polymerase (RdRp) and Nsp7 and Nsp8 cofactors domains profiles
PDOC51943  2  Coronavirus Nsp3a and Nsp3d Ubl domains profiles
PDOC51946  1  Coronavirus Nsp4 C-terminal (Nsp4C) domain profile
PDOC51928  2  Coronavirus nucleocapsid (CoV N) protein N- and C-terminal (NTD and CTD) domains profiles
PDOC51923  2  Coronavirus spike (S) glycoprotein S2 subunit heptad repeat 1 (HR1) and 2 (HR2) regions profiles
PDOC51090  1  Cortactin repeat profile
PDOC00442  1  Corticotropin-releasing factor family signature
PDOC51262  1  COS domain profile
PDOC51441  1  CpcD-like domain profile
PDOC50191  1  CRAL-TRIO lipid binding domain profile
PDOC51634  1  CRC domain profile
PDOC52020  1  CRESS-DNA virus replication initiator protein (Rep) endonuclease domain profile
PDOC50108  1  CRIB domain profile
PDOC51290  1  CRIC domain profile
PDOC00772  2  CRISP family signature
PDOC01005  1  CRM domain profile
PDOC50943  1  Cro/C1-type HTH domain profile
PDOC01025  1  Crossover junction endodeoxyribonuclease ruvC signature
PDOC00041  2  Crp-type HTH domain signature and profile
PDOC51984  2  Cryptic Polo-Box 1 and 2 (CPB1 and CPB2) domains profiles
PDOC00197  1  Crystallins beta and gamma 'Greek key' motif profile
PDOC51203  1  CS domain profile
PDOC51854  1  CSPG repeat profile
PDOC00361  2  CTF/NF-I DNA-binding domain signature and profile
PDOC00908  1  CUB domain profile
PDOC51140  1  CUE domain profile
PDOC00967  2  Cullin family signature and profile
PDOC51788  1  CULT domain profile
PDOC51042  1  CUT domain profile
PDOC51983  1  CUT repeat-like (CUTL) domain profile
PDOC00140  2  Cutinase active sites signatures
PDOC51496  1  CVC domain profile
PDOC51633  1  CXC domain profile
PDOC52051  1  CXC MSL2-type domain profile
PDOC00691  3  Cyclic nucleotide-binding domain signatures and profile
PDOC00728  2  Cyclin-dependent kinases regulatory subunits signatures
PDOC00264  1  Cyclins signature
PDOC00154  2  Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature & profile
PDOC51052  3  Cyclotides profile and signatures
PDOC00677  1  Cys/Met metabolism enzymes pyridoxal-phosphate attachment site
PDOC00259  1  Cysteine proteases inhibitors signature
PDOC50203  1  Cysteine proteinase, calpain-type, catalytic domain profile
PDOC00700  1  Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site
PDOC51289  1  Cysteine-rich GLG1 repeat
PDOC51707  1  CYTH domain profile
PDOC00702  2  Cytidine and deoxycytidylate deaminases zinc-binding region signature and domain profile
PDOC00171  2  Cytochrome b/b6 profiles
PDOC00170  2  Cytochrome b5 family, heme-binding domain signature and profile
PDOC00464  1  Cytochrome b559 subunits heme-binding site signature
PDOC50939  1  Cytochrome b561 domain profile
PDOC00647  2  Cytochrome c and c1 heme lyases signatures
PDOC00074  2  Cytochrome c oxidase subunit I signature and profile
PDOC00075  3  Cytochrome c oxidase subunit II signature and profiles
PDOC00663  2  Cytochrome c oxidase subunit Vb family signature and profile
PDOC01032  1  Cytochrome c oxidase subunit VIa signature
PDOC00081  1  Cytochrome P450 cysteine heme-iron ligand signature
PDOC00548  1  Cytosol aminopeptidase signature
PDOC00188  1  Cytosolic fatty-acid binding proteins signature
PDOC00659  2  D-alanine--D-alanine ligase signatures
PDOC00573  1  D-amino acid oxidases signature
PDOC00063  3  D-isomer specific 2-hydroxyacid dehydrogenases signatures
PDOC50146  1  DAG-kinase catalytic (DAGKc) domain profile
PDOC50824  1  DAPIN domain profile
PDOC51890  1  DAZ domain profile
PDOC51376  1  DBB domain profile
PDOC51413  1  DBINO domain profile
PDOC00605  2  Dbl homology (DH) domain signature and profile
PDOC51222  1  DCD domain profile
PDOC51229  1  DCUN1 domain profile
PDOC00329  1  DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site
PDOC51043  1  DDHD domain profile
PDOC50827  1  DDT domain profile
PDOC00039  2  DEAD and DEAH box families ATP-dependent helicases signatures
PDOC51195  1  DEAD-box RNA helicase Q motif profile
PDOC50017  1  Death domain profile
PDOC50168  1  Death effector domain (DED) profile
PDOC51482  1  DegV domain profile
PDOC00285  2  Dehydrins signatures
PDOC00788  1  Dehydroquinase class I active site
PDOC00789  1  Dehydroquinase class II signature
PDOC51998  1  DEK C-terminal (DEK-C) domain profile
PDOC00451  1  Delta 1-pyrroline-5-carboxylate reductase signature
PDOC00153  1  Delta-aminolevulinic acid dehydratase active site
PDOC60018  1  Delta-atracotoxin (ACTX) family signature
PDOC00696  2  DeoR-type HTH domain signature and profile
PDOC00711  2  Deoxyribonuclease I signatures
PDOC50186  1  DEP domain profile
PDOC00996  1  Dephospho-CoA kinase (DPCK) domain profile
PDOC51916  1  DEUBAD (DEUBiquitinase ADaptor) domain profile
PDOC51512  3  DFDF domain and FFD and TFG boxes profiles
PDOC51699  1  DG-type SEA domain profile
PDOC51481  1  DhaK domain profile
PDOC51480  1  DhaL domain profile
PDOC50216  1  DHHC domain profile
PDOC51794  1  Diadenylate cyclase (DAC) domain profile
PDOC01029  1  Diaminopimelate epimerase signature
PDOC51231  1  Diaphanous autoregulatory domain (DAD) profile
PDOC51327  1  Dicer double-stranded RNA-binding fold domain profile
PDOC01000  1  Dihydrodipicolinate reductase signature
PDOC00569  2  Dihydrodipicolinate synthase signatures
PDOC00072  2  Dihydrofolate reductase (DHFR) domain signature and profile
PDOC00401  2  Dihydroorotase signatures
PDOC00708  2  Dihydroorotate dehydrogenase signatures
PDOC00630  2  Dihydropteroate synthase signatures
PDOC00690  2  Dihydroxy-acid and 6-phosphogluconate dehydratases signatures
PDOC51126  1  Dilute domain profile
PDOC51825  1  DIPSY domain profile
PDOC00351  2  Disintegrin domain signature and profile
PDOC50841  1  DIX domain profile
PDOC50809  2  DM DNA-binding domain signature and profile
PDOC51336  1  DM10 domain profile
PDOC51549  1  DM13 domain profile
PDOC51912  1  DMAP1-binding domain profile
PDOC52018  1  DNA ADP-ribosyl transferase (DarT) domain profile
PDOC00057  1  DNA mismatch repair proteins mutL / hexB / PMS1 signature
PDOC00388  1  DNA mismatch repair proteins mutS family signature
PDOC00331  2  DNA photolyases class 1 signatures
PDOC00832  2  DNA photolyases class 2 signatures
PDOC00412  1  DNA polymerase family A signature
PDOC00107  1  DNA polymerase family B signature
PDOC00452  1  DNA polymerase family X signature
PDOC00160  1  DNA topoisomerase II signature
PDOC51737  1  DNA-binding recombinase domain profile
PDOC00821  1  DNA/RNA non-specific endonucleases active site
PDOC00771  1  DnaA protein signature
PDOC51284  1  DOC domain profile
PDOC51766  1  Dockerin domain profile
PDOC51806  1  DOG1 domain profile
PDOC50836  1  DOMON domain profile
PDOC51569  1  DOT1 domain profile
PDOC50137  1  Double stranded RNA-binding domain (dsRBD) profile
PDOC50309  1  Doublecortin domain profile
PDOC51074  1  DPH-type metal-binding (MB) domain profile
PDOC00645  2  Dps protein family signatures
PDOC51051  1  DSL domain profile
PDOC50944  1  DtxR-type HTH domain profile
PDOC51283  1  DUSP domain profile
PDOC51282  1  DWNN domain profile
PDOC00362  2  Dynamin-type guanine nucleotide-binding (G) domain signature and profile
PDOC00953  1  Dynein light chain type 1 signature
PDOC51404  1  DyP-type peroxidase family
PDOC51703  1  DZF domain profile
PDOC50883  1  EAL domain profile
PDOC50912  1  EAR repeat profile
PDOC51230  1  EB1-like C-terminal (EB1-C) domain profile
PDOC00018  2  EF-hand calcium-binding domain signature and profile
PDOC00021  3  EGF-like domain signatures and profile
PDOC50031  1  EH domain profile
PDOC00583  1  Electron transfer flavoprotein alpha-subunit signature
PDOC00816  1  Electron transfer flavoprotein beta-subunit signature
PDOC51213  1  ELK domain profile
PDOC51156  1  ELM2 domain profile
PDOC51335  1  ELMO domain profile
PDOC00914  1  ELO family signature
PDOC01001  1  Elongation factor 1 (EF-1) gamma C-terminal domain profile
PDOC00648  2  Elongation factor 1 beta/beta'/delta chain signatures
PDOC00981  1  Elongation factor P signature
PDOC00867  2  Elongation factor Ts signatures
PDOC51041  1  EMI domain profile
PDOC51138  1  EMSY N-terminal (ENT) domain profile
PDOC00964  1  Endogenous opioids neuropeptides precursors signature
PDOC00615  2  Endonuclease III signatures
PDOC00358  2  Endopeptidase Clp active sites
PDOC00014  1  Endoplasmic reticulum targeting sequence
PDOC00243  1  Endothelin family signature
PDOC51712  1  EngA-type guanine nucleotide-binding (G) domain profile
PDOC51706  1  EngB-type guanine nucleotide-binding (G) domain profile
PDOC50936  1  EngC GTPase domain profile
PDOC00992  1  Enhancer of rudimentary signature
PDOC51665  1  Enkurin domain profile
PDOC00148  1  Enolase signature
PDOC00150  1  Enoyl-CoA hydratase/isomerase signature
PDOC00582  2  Enterobacterial virulence outer membrane protein signatures
PDOC50942  1  ENTH domain profile
PDOC00699  2  Ependymins signatures
PDOC51550  1  Eph receptor ligand binding (Eph LBD) domain profile
PDOC01003  2  Ephrin receptor-binding (ephrin RBD) domain signature and profile
PDOC00097  2  EPSP synthase signatures
PDOC00732  2  ER lumen protein retaining receptor signatures
PDOC51713  1  Era-type guanine nucleotide-binding (G) domain profile
PDOC60026  1  Ergtoxin (ErgTx) family signature
PDOC51324  1  ERV/ALR sulfhydryl oxidase domain profile
PDOC00644  1  Erythropoietin / thrombopoeitin signature
PDOC00374  3  Ets-domain signatures and profile
PDOC00128  3  Eukaryotic and viral aspartyl proteases signature and profiles
PDOC00428  1  Eukaryotic cobalamin-binding proteins signature
PDOC00970  1  Eukaryotic initiation factor 1A signature
PDOC00641  1  Eukaryotic initiation factor 4E signature
PDOC00274  1  Eukaryotic initiation factor 5A hypusine signature
PDOC00483  1  Eukaryotic mitochondrial porin signature
PDOC00484  1  Eukaryotic molybdopterin oxidoreductases signature
PDOC00106  1  Eukaryotic RNA polymerase II heptapeptide repeat
PDOC00030  1  Eukaryotic RNA recognition motif profile
PDOC00126  3  Eukaryotic thiol (cysteine) proteases active sites
PDOC51959  1  Eukaryotic uridylate-specific endoribonuclease (EndoU) domain profile
PDOC51933  1  EutK-Ctail domain profile
PDOC51784  2  Exonuclease I (ExoI) SH3-like and C-terminal domains profiles
PDOC50842  2  Expansin family profiles
PDOC51751  1  EXPERA domain profile
PDOC51380  1  EXS domain profile
PDOC51805  1  Extended PHD (ePHD) domain profile
PDOC00078  1  Extradiol ring-cleavage dioxygenases signature
PDOC00609  2  F-actin capping protein alpha subunit signatures
PDOC00203  1  F-actin capping protein beta subunit signature
PDOC51741  1  F-BAR domain profile
PDOC50181  1  F-box domain profile
PDOC51114  1  F-box-associated (FBA) domain profile
PDOC00753  2  FAD-dependent glycerol-3-phosphate dehydrogenase signatures
PDOC50213  1  FAS1/BIgH3 domain profile
PDOC51189  2  FAT and FATC domains profiles
PDOC00399  2  Fatty acid desaturases signatures
PDOC50969  1  FCP1 homology domain profile
PDOC51471  1  Fe(2+) 2-oxoglutarate dioxygenase domain profile
PDOC51191  1  FemABX peptidyl transferase family profile
PDOC51711  1  FeoB-type guanine nucleotide-binding (G) domain profile
PDOC00566  3  FERM domain signatures and profile
PDOC51384  1  Ferredoxin reductase-type FAD-binding domain profile
PDOC51447  1  Ferredoxin-fold anticodon binding (FDX-ACB) domain profile
PDOC00181  2  Ferritin iron-binding regions signatures
PDOC50905  1  Ferritin-like diiron domain profile
PDOC00462  1  Ferrochelatase signature
PDOC00966  4  Fetuin family signatures and fetuin-A- and fetuin-B-type cystatin domain profiles
PDOC51676  1  FF domain domain profile
PDOC51470  1  FG-GAP repeat profile
PDOC00408  2  FGGY family of carbohydrate kinases signatures
PDOC51461  1  Fibrillar collagen C-terminal non-collagenous (NC1) domain profile
PDOC00489  1  Fibrillarin signature
PDOC00445  2  Fibrinogen C-terminal domain signature and profile
PDOC00965  2  Fibronectin type-I domain signature and profile
PDOC00022  2  Fibronectin type-II collagen-binding domain signature and profile
PDOC50853  1  Fibronectin type-III domain profile
PDOC51459  1  Fido domain profile
PDOC51830  1  FIIND domain profile
PDOC50194  1  Filamin/ABP280 repeat profile
PDOC51735  1  Filoviruses VP35 interferon inhibitory (IID) domain profile
PDOC00886  1  Fimbrial biogenesis outer membrane usher protein signature
PDOC51511  1  FIP-RBD domain profile
PDOC00426  1  FKBP-type peptidyl-prolyl cis-trans isomerase profile
PDOC00508  1  Flagella basal body rod proteins signature
PDOC00812  2  Flagella transport protein fliP family signatures
PDOC01011  1  Flagellar motor protein motA family signature
PDOC00999  1  FLAP/GST2/LTC4S family signature
PDOC51331  1  Flavin-dependent thymidylate synthase (thyX) domain profile
PDOC51527  2  Flavivirus NS2B and NS3 protease (NS3pro) domain profiles
PDOC00178  1  Flavodoxin signature
PDOC50902  1  Flavodoxin-like domain profile
PDOC51824  1  Flocculin 11 (Flo11) domain profile
PDOC00482  2  FMN-dependent alpha-hydroxy acid dehydrogenase signature and profile
PDOC51531  1  Foamy virus protease (FV PR) domain profile
PDOC00773  2  Folylpolyglutamate synthase signatures
PDOC00564  3  Fork head domain signatures and profile
PDOC50006  1  Forkhead-associated (FHA) domain profile
PDOC00956  3  Formamidopyrimidine-DNA glycosylase signature and profiles
PDOC00769  2  Formate and nitrite transporters signatures
PDOC00595  2  Formate--tetrahydrofolate ligase signatures
PDOC51444  1  Formin homology-2 (FH2) domain profile
PDOC01043  2  Frataxin family signature and profile
PDOC50038  1  Frizzled (fz) domain profile
PDOC00114  1  Fructose-1-6-bisphosphatase active site
PDOC00143  1  Fructose-bisphosphate aldolase class-I active site
PDOC00523  2  Fructose-bisphosphate aldolase class-II signatures
PDOC50901  1  FtsK domain profile
PDOC00873  2  FtsZ protein signatures
PDOC00147  1  Fumarate lyases signature
PDOC00393  1  Fumarate reductase / succinate dehydrogenase FAD-binding site
PDOC00739  1  Fungal hydrophobins signature
PDOC01014  1  FXYD family signature
PDOC51542  2  FYR domain FYRN and FYRC motif profiles
PDOC51882  1  G-alpha domain profile
PDOC50174  1  G-patch domain profile
PDOC00210  2  G-protein coupled receptors family 1 signature and profile
PDOC00559  4  G-protein coupled receptors family 2 signatures and profiles
PDOC00754  4  G-protein coupled receptors family 3 signatures and profile
PDOC01002  1  G-protein gamma subunit profile
PDOC00765  2  G10 protein signatures
PDOC51109  1  G5 domain profile
PDOC51484  1  G8 domain profile
PDOC50221  1  GAIN-B domain profile
PDOC00099  1  Galactokinase signature
PDOC00108  2  Galactose-1-phosphate uridyl transferase signatures
PDOC00279  1  Galactoside-binding lectin (galectin) domain profile
PDOC00673  1  Galanin signature
PDOC50180  1  Gamma-adaptin ear (GAE) domain profile
PDOC00011  2  Gamma-carboxyglutamic acid-rich (Gla) domain signature and profile
PDOC51275  1  Gamma-glutamyl hydrolase domain profile
PDOC00940  1  Gamma-glutamyl phosphate reductase signature
PDOC00404  1  Gamma-glutamyltranspeptidase signature
PDOC00725  1  Gamma-thionins family signature
PDOC51460  1  GAR domain profile
PDOC00207  2  Gas vesicles protein GVPa signatures
PDOC00208  1  Gas vesicles protein GVPc repeated domain signature
PDOC00232  1  Gastrin / cholecystokinin family signature
PDOC50909  1  GAT domain profile
PDOC00300  2  GATA-type zinc finger domain signature and profile
PDOC51715  1  GB1/RHD3-type guanine nucleotide-binding (G) domain profile
PDOC51069  1  GBP repeat profile
PDOC50807  1  GCM domain profile
PDOC51186  4  Gcn5-related N-acetyltransferase (GNAT) domain profiles
PDOC00952  1  GDA1/CD39 family of nucleoside phosphatases signature
PDOC51388  1  GED domain profile
PDOC00498  1  General diffusion Gram-negative porins signature
PDOC00597  1  Germin family signature
PDOC52031  1  GG-type lectin domain profile
PDOC50887  1  GGDEF domain profile
PDOC00545  1  GHMP kinases putative ATP-binding domain
PDOC51867  1  Gid-type RING finger profile
PDOC50164  1  GIY-YIG domain profile
PDOC00793  2  Globin family and Androglobin (Adgb) circularly permuted globin domain profiles
PDOC00726  1  glpT family of transporters signature
PDOC00071  1  Glu / Leu / Phe / Val dehydrogenases active site
PDOC00233  1  Glucagon / GIP / secretin / VIP family signature
PDOC00646  1  Glucoamylase active site region signature
PDOC00979  1  Glucokinase regulatory protein family signature
PDOC00894  1  Glucosamine/galactosamine-6-phosphate isomerases signature
PDOC00986  2  Glucose inhibited division protein A family signatures
PDOC00067  1  Glucose-6-phosphate dehydrogenase active site
PDOC00157  3  Glucose-6-phosphate isomerase (GPI) family signatures and profile
PDOC51495  1  GLUE domain profile
PDOC00701  1  Glutamate 5-kinase signature
PDOC60031  1  Glutamic acid-rich protein 2 (GARP2) signature
PDOC00405  1  Glutamine amidotransferase type 1 domain profile
PDOC00406  1  Glutamine amidotransferase type 2 domain profile
PDOC51986  2  Glutamine synthetase (GS) beta-grasp and catalytic domains profiles
PDOC00162  3  Glutamine synthetase signatures
PDOC00608  1  Glutamyl-tRNA reductase signature
PDOC00948  1  Glutamyl-tRNA(Gln) amidotransferase subunit B signature
PDOC00173  2  Glutaredoxin active site signature and domain profile
PDOC00396  3  Glutathione peroxidases signatures and profile
PDOC00069  1  Glyceraldehyde 3-phosphate dehydrogenase active site
PDOC00665  2  Glycine radical domain signature and profile
PDOC00281  1  Glycophorin A signature
PDOC00779  1  Glycoprotease family signature
PDOC00623  3  Glycoprotein hormones alpha chain signatures and profile
PDOC00234  2  Glycoprotein hormones beta chain signatures
PDOC00495  2  Glycosyl hydrolases family 1 signatures
PDOC00510  2  Glycosyl hydrolases family 10 (GH10) active site and domain profile
PDOC00622  3  Glycosyl hydrolases family 11 (GH11) active sites signatures and domain profile
PDOC00794  2  Glycosyl hydrolases family 16 (GH16) signature and domain profile
PDOC00507  1  Glycosyl hydrolases family 17 signature
PDOC00839  2  Glycosyl hydrolases family 18 (GH18) active site signature and domain profile
PDOC00531  2  Glycosyl hydrolases family 2 signatures
PDOC00119  2  Glycosyl hydrolases family 22 (GH22) domain signature and profile
PDOC00737  2  Glycosyl hydrolases family 25 (GH25) active site signature and domain profile
PDOC51764  1  Glycosyl hydrolases family 26 (GH26) domain profile
PDOC00621  1  Glycosyl hydrolases family 3 active site
PDOC00120  2  Glycosyl hydrolases family 31 signatures
PDOC00532  1  Glycosyl hydrolases family 32 active site
PDOC00910  1  Glycosyl hydrolases family 35 putative active site
PDOC00787  1  Glycosyl hydrolases family 39 putative active site
PDOC01027  1  Glycosyl hydrolases family 4 signature
PDOC00877  1  Glycosyl hydrolases family 45 active site
PDOC00565  1  Glycosyl hydrolases family 5 signature
PDOC00563  2  Glycosyl hydrolases family 6 signatures
PDOC52006  1  Glycosyl hydrolases family 64 (GH64) domain profile
PDOC00640  1  Glycosyl hydrolases family 8 signature
PDOC52008  1  Glycosyl hydrolases family 81 (GH81) domain profile
PDOC52009  1  Glycosyl hydrolases family 84 (GH84) domain profile
PDOC00511  3  Glycosyl hydrolases family 9 (GH9) active sites signatures
PDOC51659  1  Glycosyltransferase family 23 (GT23) domain profile
PDOC00720  2  Glyoxalase I signatures
PDOC00927  1  Glypicans signature
PDOC00543  2  GMC oxidoreductases signatures
PDOC51553  1  GMP synthetase ATP pyrophosphatase (GMPS ATP-PPase) domain profile
PDOC51473  1  Gnk2-homologous domain profile
PDOC00042  1  GntR-type HTH domain profile
PDOC50866  1  GOLD domain profile
PDOC50877  1  GoLoco/GPR motif profile
PDOC51046  1  GON domain profile
PDOC00432  1  Gonadotropin-releasing hormones signature
PDOC51704  1  GP-PDE domain profile
PDOC00890  1  GPR1/FUN34/yaaH family signature
PDOC00552  1  Gram-negative pili assembly chaperone signature
PDOC00373  1  Gram-positive cocci surface proteins LPxTG motif profile
PDOC00365  2  Granins signatures
PDOC00634  1  Granulins signature
PDOC00584  1  Granulocyte-macrophage colony-stimulating factor signature
PDOC50985  1  GRAS domain profile
PDOC51865  1  GRASP-type PDZ domain profile
PDOC51968  1  Grh/CP2 DNA-binding (DB) domain profile
PDOC50913  1  GRIP domain profile
PDOC00822  1  grpE protein signature
PDOC51256  1  GS domain profile
PDOC51775  1  GTD-binding domain profile
PDOC51139  1  GTF2I-like repeat profile
PDOC00672  2  GTP cyclohydrolase I signatures
PDOC52057  1  GTP-binding protein-like domain (GLD) profile
PDOC00704  1  GTP1/OBG family signature
PDOC00425  2  Guanylate cyclase domain signature and profile
PDOC00670  2  Guanylate kinase-like signature and profile
PDOC51780  1  GW domain profile
PDOC50829  1  GYF domain profile
PDOC50885  1  HAMP domain profile
PDOC51913  1  HARE-type HTH domain profile
PDOC51467  1  HARP domain profile
PDOC00220  1  HBGF/FGF family signature
PDOC51753  1  HBM domain profile
PDOC00292  1  HCP repeats signature
PDOC51643  1  HD Cas3-type domain profile
PDOC51831  3  HD, HD-GYP and HD-related output (HDOD) domains profiles
PDOC51089  1  Headpiece (HP) domain profile
PDOC50077  1  HEAT repeat profile
PDOC00269  3  Heat shock hsp70 proteins family signatures
PDOC00270  1  Heat shock hsp90 proteins family signature
PDOC00246  1  Heat-stable enterotoxins signature
PDOC00804  2  Heavy-metal-associated domain signature and profile
PDOC50237  1  HECT domain profile
PDOC51744  1  Helper-component proteinase (HC-Pro) cysteine protease (CPD) domain profile
PDOC51405  1  Heme haloperoxidase family profile
PDOC00512  1  Heme oxygenase signature
PDOC00394  4  Heme peroxidase signatures and profiles
PDOC50253  1  Heme-copper oxidase subunit III profile
PDOC00476  1  Hemerythrin family signature
PDOC00293  1  Hemolysin-type calcium-binding region signature
PDOC00023  2  Hemopexin domain signature and hemopexin repeat profile
PDOC51693  1  Hepacivirus nonstructural protein 2 (NS2) protease domain profile
PDOC51822  1  Hepacivirus/Pegivirus NS3 protease domain profile
PDOC51838  1  Hepatitis delta antigen (HDAg) domain profile
PDOC50910  1  HEPN domain profile
PDOC51988  1  Herpesviridae UL32 packaging protein family profile
PDOC51521  1  Herpesvirus tegument ubiquitin-specific protease (htUSP) domain profile
PDOC00094  1  Hexapeptide-repeat containing-transferases signature
PDOC00370  2  Hexokinase domain signature and profile
PDOC51705  1  HflX-type guanine nucleotide-binding (G) domain profile
PDOC51503  1  HIG1 domain profile
PDOC00515  1  High potential iron-sulfur proteins family profile
PDOC50834  1  HIN-200 A and B domains profile
PDOC51839  1  His(Cys)3-ligated-type [4Fe-4S] domain profile
PDOC00538  2  Histidine acid phosphatases signatures
PDOC50109  1  Histidine kinase domain profile
PDOC50894  1  Histidine-containing phosphotransfer (HPt) domain profile
PDOC00534  1  Histidinol dehydrogenase signature
PDOC00045  1  Histone H2A signature
PDOC00308  1  Histone H2B signature
PDOC00287  2  Histone H3 signatures
PDOC00046  1  Histone H4 signature
PDOC00694  2  HIT domain signature and profile
PDOC00469  1  HlyD family secretion proteins signature
PDOC00305  2  HMG boxes A and B DNA-binding domains signature and profile
PDOC00306  1  HMG-I and HMG-Y DNA-binding domain (A+T-hook)
PDOC00307  1  HMG14 and HMG17 signature
PDOC51937  1  HNF-1 dimerization (HNF-p1) domain profile
PDOC00481  1  Hok/gef family cell toxic proteins signature
PDOC51818  1  Homeo-Prospero (HPD) domain profile
PDOC00032  1  'Homeobox' antennapedia-type protein signature
PDOC00027  2  'Homeobox' domain signature and profile
PDOC00033  1  'Homeobox' engrailed-type protein signature
PDOC50970  1  Homocysteine-binding domain profile
PDOC00800  1  Homoserine dehydrogenase signature
PDOC50815  1  HORMA domain profile
PDOC51770  1  HotDog acyl-CoA thioesterase (ACOT)-type domain profile
PDOC50967  1  HRDC domain profile
PDOC51204  1  HSA domain profile
PDOC51791  1  hSac2 domain profile
PDOC00381  1  HSF-type DNA-binding domain signature
PDOC51414  1  HSR domain profile
PDOC60021  1  Huwentoxin-1 family signature
PDOC60022  1  Huwentoxin-2 family signature
PDOC51118  1  HxlR-type HTH domain profile
PDOC00841  1  Hydrogenases expression/synthesis hupF/hypC family signature
PDOC00962  1  Hydrogenases expression/synthesis hypA family signature
PDOC00813  1  Hydroxymethylglutaryl-coenzyme A lyase active site
PDOC00064  4  Hydroxymethylglutaryl-coenzyme A reductase signatures and profile
PDOC00942  1  Hydroxymethylglutaryl-coenzyme A synthase active site
PDOC00944  2  Hypothetical cof family signatures
PDOC00887  1  Hypothetical hesB/yadR/yfhF family signature
PDOC51875  2  Hypovirulence-associated virus (HAV) papain-like proteases p29 and p48 domains profiles
PDOC50825  1  HYR domain profile
PDOC50945  1  I/LWEQ domain profile
PDOC51214  1  IBB domain profile
PDOC00807  2  IclR-type HTH and iclR effector binding domains profiles
PDOC50835  1  Ig-like domain profile
PDOC51338  1  IMD domain profile
PDOC00738  2  Imidazoleglycerol-phosphate dehydratase signatures
PDOC00262  1  Immunoglobulins and major histocompatibility complex proteins signature
PDOC00391  1  IMP dehydrogenase / GMP reductase signature
PDOC50166  1  Importin-beta N-terminal domain profile
PDOC00536  1  Indole-3-glycerol phosphate synthase signature
PDOC00684  2  Indoleamine 2,3-dioxygenase signatures
PDOC00905  1  Initiation factor 2 signature
PDOC00723  1  Initiation factor 3 signature
PDOC00325  1  Inorganic pyrophosphatase signature
PDOC00960  1  Inosine-uridine preferring nucleoside hydrolase family signature
PDOC00547  2  Inositol monophosphatase family signatures
PDOC00235  1  Insulin family signature
PDOC00194  2  Insulin-like growth factor binding protein (IGFBP) N-terminal domain signature and profile
PDOC00130  1  Insulinase family, zinc-binding region signature
PDOC50994  1  Integrase catalytic domain profile
PDOC51027  1  Integrase DNA binding domain profile
PDOC00215  1  Integrins alpha chain signature
PDOC00216  2  Integrins beta chain EGF (I-EGF) domain signature and profile
PDOC50819  1  Intein DOD-type homing endonuclease domain profile
PDOC00687  2  Intein N- and C-terminal splicing motif profiles
PDOC00225  1  Interferon alpha, beta and delta family signature
PDOC00226  1  Interleukin-1 signature
PDOC00450  1  Interleukin-10 family signature
PDOC00349  1  Interleukin-2 signature
PDOC00227  1  Interleukin-6 / G-CSF / MGF family signature
PDOC00228  1  Interleukin-7 and -9 signature
PDOC00655  1  Interleukins -4 and -13 signature
PDOC00198  2  Intermediate filament (IF) rod domain signature and profile
PDOC00079  1  Intradiol ring-cleavage dioxygenases signature
PDOC51688  1  Intramolecular chaperone auto-processing (ICA) domain profile
PDOC51909  1  Invertebrate (I)-type lysozyme domain profile
PDOC00356  1  Invertebrate defensins family profile
PDOC00632  1  Involucrin signature
PDOC00925  1  Iodothyronine deiodinases active site
PDOC50096  1  IQ motif profile
PDOC00522  2  IRF tryptophan pentad repeat DNA-binding domain signature and profile
PDOC51716  1  IRG-type guanine nucleotide-binding (G) domain profile
PDOC50983  1  Iron siderophore/cobalamin periplasmic-binding domain profile
PDOC00059  2  Iron-containing alcohol dehydrogenases signatures
PDOC51064  1  IRS-type phosphotyrosine binding domain (PTB) profile
PDOC50531  2  IS21/IS408 transposase-types HTH domains profiles
PDOC00389  1  Isocitrate and isopropylmalate dehydrogenases signature
PDOC00145  1  Isocitrate lyase signature
PDOC00165  2  Isopenicillin N synthase signatures
PDOC51055  2  ITAM motif profiles
PDOC00553  3  J-protein family domains signature and profiles
PDOC51752  1  Jacalin-type lectin domain profile
PDOC60020  1  Janus-faced atracotoxin (J-ACTX) family signature
PDOC51183  2  JmjN and JmjC domains profiles
PDOC50957  1  Josephin domain profile
PDOC51297  1  K-box domain profile
PDOC51430  2  KaiA N- and C-terminal domain profiles
PDOC51146  1  KaiC domain profile
PDOC51850  2  KARI N- and C-terminal domains profiles
PDOC51049  1  KASH domain profile
PDOC00254  2  Kazal serine protease inhibitors family signature and profile
PDOC51488  1  KBD domain profile
PDOC00144  2  KDPG and KHG aldolases active site signatures
PDOC51392  1  KEN domain profile
PDOC00529  2  Ketosynthase family 3 (KS3) active signature and domain profile
PDOC50084  2  KH domain profiles
PDOC51490  1  KHA domain profile
PDOC50953  1  KID domain profile
PDOC51301  1  KilA-N domain profile
PDOC50032  1  Kinase associated domain 1 (KA1) profile
PDOC51377  1  KIND domain profile
PDOC00893  1  Kinesin light chain repeat
PDOC00343  2  Kinesin motor domain signature and profile
PDOC51647  1  Kininogen-type cystatin domain profile
PDOC50952  1  KIX domain profile
PDOC50806  1  KRAB-related domain profile
PDOC00020  2  Kringle domain signature and profile
PDOC50805  1  Krueppel-associated box (KRAB) profile
PDOC52029  1  L,D-transpeptidase (L,D-TPase) catalytic domain profile
PDOC00062  1  L-lactate dehydrogenase active site
PDOC51328  1  L-type lectin-like (leguminous) domain profile
PDOC51022  1  L27 domain profile
PDOC50961  1  La-type HTH domain profile
PDOC00366  2  LacI-type HTH domain signature and profile
PDOC00698  2  LacY family proton/sugar symporters signatures
PDOC00478  1  Lambdoid phages regulatory protein CIII signature
PDOC51841  1  Lamin-tail (LTD) domain profile
PDOC50025  1  Laminin G domain profile
PDOC51115  2  Laminin IV domain profiles
PDOC51117  1  Laminin N-terminal (LN) domain profile
PDOC00961  2  Laminin-type EGF-like (LE) domain signature and profile
PDOC51287  1  Large T-antigen (T-ag) origin-binding domain (OBD) profile
PDOC01030  1  Large-conductance mechanosensitive channels mscL family signature
PDOC52033  1  Latexin (LXN)-type cystatin domain profile
PDOC00367  1  LBP / BPI / CETP family signature
PDOC50820  1  LCCL domain profile
PDOC51863  1  LCN-type cysteine-stabilized alpha/beta (CS-alpha/beta) domain profile
PDOC00929  2  LDL-receptor class A (LDLRA) domain signature and profile
PDOC51120  1  LDL-receptor class B (LDLRB) repeat profile
PDOC50231  1  Lectin domain of ricin B chain profile
PDOC00278  2  Legume lectins signatures
PDOC50954  2  LEM and LEM-like domain profiles
PDOC51758  1  Letm1 ribosome-binding (RBD) domain profile
PDOC51450  1  Leucine rich repeat profile
PDOC00029  1  Leucine zipper pattern
PDOC00509  1  LIF / OSM family signature
PDOC51957  1  LIM interaction domain (LID) domain profile
PDOC00382  2  LIM zinc-binding domain signature and profile
PDOC00955  2  Link domain signature and profile
PDOC51504  1  Linker histone H1/H5 globular (H15) domain profile
PDOC00110  1  Lipases, serine active site
PDOC00187  1  Lipocalin signature
PDOC00842  1  Lipolytic enzymes "G-D-S-L" family, serine active site
PDOC00903  2  Lipolytic enzymes "G-D-X-G" family, putative active sites signatures
PDOC00077  3  Lipoxygenase iron-binding catalytic domain signatures and profile
PDOC50896  2  LIS1 homology (LisH) motif and C-terminal to LisH (CTLH) motif profiles
PDOC51837  1  LITAF domain profile
PDOC50258  1  LNR (Lin-12/Notch) repeat profile
PDOC50891  1  LOB domain profile
PDOC51787  1  Lon N-terminal domain profile
PDOC51786  1  Lon proteolytic domain profile
PDOC01051  1  Long hematopoietin receptor, gp130 family signature
PDOC01050  1  Long hematopoietin receptor, single chain family signature
PDOC01052  1  Long hematopoietin receptor, soluble alpha chains family signature
PDOC50859  1  Longin domain profile
PDOC51934  1  LRAT domain profile
PDOC00542  2  LuxR-type HTH domain signature and profile
PDOC51756  1  LXG domain profile
PDOC00756  1  Ly-6 / u-PAR domain signature
PDOC51782  1  LysM domain profile
PDOC00280  3  Lysosome-associated membrane glycoprotein family signatures and profile
PDOC00043  1  LysR-type HTH domain profile
PDOC01028  1  Lysyl hydroxylase signature
PDOC00716  1  Lysyl oxidase putative copper-binding region signature
PDOC50930  1  LytTR-type HTH domain profile
PDOC51498  1  MABP domain profile
PDOC51154  1  Macro domain profile
PDOC00892  1  Macrophage migration inhibitory factor family signature
PDOC51075  2  MAD homology domains MH1 and MH2 profiles
PDOC51029  1  MADF domain profile
PDOC00302  2  MADS-box domain signature and profile
PDOC50838  1  MAGE conserved domain profile
PDOC50850  1  Major facilitator superfamily (MFS) profile
PDOC50202  1  Major sperm protein (MSP) domain profile
PDOC00066  1  Malate dehydrogenase active site signature
PDOC00441  1  Malate synthase signature
PDOC00294  1  Malic enzymes signature
PDOC00604  2  MAM domain signature and profile
PDOC00242  1  Mammalian defensins signature
PDOC00706  2  Mandelate racemase / muconate lactonizing enzyme family signatures
PDOC00083  1  Manganese and iron superoxide dismutases signature
PDOC00751  1  Mannitol dehydrogenases signature
PDOC50986  1  MANSC domain profile
PDOC01049  1  MAP kinase signature
PDOC51223  1  MAP repeat profile
PDOC00649  2  MARCKS family signatures
PDOC52032  1  MarR-like, BRCT and chromo domains module profile
PDOC00861  2  MarR-type HTH domain signature and profile
PDOC51225  1  MARVEL domain profile
PDOC50144  1  MATH/TRAF domain profile
PDOC00472  1  Matrixins cysteine switch
PDOC51079  1  MBT repeat profile
PDOC00662  2  MCM family signature and profile
PDOC00251  2  Membrane attack complex/perforin (MACPF) domain signature and profile
PDOC51439  1  MENTAL domain profile
PDOC00477  2  MerR-type HTH domain signature and profile
PDOC00575  2  Methionine aminopeptidase signatures
PDOC51790  1  Methionine-R-sulfoxide reductase (MsrB) domain profile
PDOC50982  1  Methyl-CpG-binding domain (MBD) profile
PDOC00320  1  Methylated-DNA--protein-cysteine methyltransferase active site
PDOC01037  1  Methylglyoxal synthase active site
PDOC00470  1  Methylmalonyl-CoA mutase signature
PDOC00984  2  Methylthiotransferase domain signature and profile
PDOC51855  1  MGS-like domain profile
PDOC50924  1  MHYT domain profile
PDOC51366  1  MI domain profile
PDOC51416  1  MIB/HERC2 domain profile
PDOC00299  1  Microbodies C-terminal targeting signal
PDOC00193  1  MIP family signature
PDOC50919  1  MIR domain profile
PDOC51793  1  Mis18 domain profile
PDOC01009  1  moaA / nifB / pqqE family signature
PDOC00828  2  Molybdenum cofactor biosynthesis proteins signatures
PDOC51866  1  Mop domain profile
PDOC51340  1  MOSC domain profile
PDOC50249  1  MPN domain profile
PDOC01046  2  MraY family signatures
PDOC51640  1  MRG domain profile
PDOC51914  1  MRH domain profile
PDOC51562  1  mRNA cap 0 methyltransferase domain profile
PDOC00935  1  Mrp family signature
PDOC51796  1  MSS4 domain profile
PDOC51143  1  MT-A70-like family profile
PDOC51072  1  Mu homology domain (MHD) profile
PDOC60015  1  Mu-agatoxin family signature
PDOC51702  1  Mu-type HTH domain profile
PDOC00076  2  Multicopper oxidases signatures
PDOC51258  2  Munc13-homology domains 1 and 2 (MHD1 and MHD2) profiles
PDOC51224  1  MVP (vault) repeat profile
PDOC00037  2  Myb-type HTH DNA-binding domain profiles
PDOC00038  1  Myc-type, basic helix-loop-helix (bHLH) domain profile
PDOC00492  1  Myelin basic protein signature
PDOC00491  1  Myelin P0 protein signature
PDOC00497  2  Myelin proteolipid protein signatures
PDOC51456  1  Myosin motor domain profile
PDOC51844  1  Myosin N-terminal SH3-like domain profile
PDOC00435  2  Myotoxins family signature and profile
PDOC51339  1  Myotubularin phosphatase domain
PDOC00752  2  Myristoyl-CoA:protein N-myristoyltransferase signatures
PDOC51726  1  MYST-type histone acetyltransferase (HAT) domain profile
PDOC51016  1  MyTH4 domain profile
PDOC00088  1  N-4 cytosine-specific DNA methylases signature
PDOC00087  1  N-6 Adenine-specific DNA methylases signature
PDOC00941  1  N-acetyl-gamma-glutamyl-phosphate reductase active site
PDOC00001  1  N-glycosylation site
PDOC00008  1  N-myristoylation site
PDOC51151  1  NAC A/B domain profile
PDOC51005  1  NAC domain profile
PDOC50837  1  NACHT-NTPase domain profile
PDOC00809  2  NAD-dependent DNA ligase signatures
PDOC00740  1  NAD-dependent glycerol-3-phosphate dehydrogenase signature
PDOC00993  1  NAD:arginine ADP-ribosyltransferase signature
PDOC51300  1  NADH-nitrite reductase subunit D family profile
PDOC50816  1  NAF domain profile
PDOC00430  1  Natriuretic peptides receptors signature
PDOC00236  1  Natriuretic peptides signature
PDOC51487  1  NBD domain profile
PDOC51517  1  NDT80 DNA-binding domain profile
PDOC50978  1  NEAT domain profile
PDOC51216  1  Nebulin repeat profile
PDOC51885  1  Neprilysin-like (M13) protease domain profile
PDOC52045  1  Neprosin prolyl endopeptidase (PEP) catalytic domain profile
PDOC50965  1  NERD domain profile
PDOC00221  2  Nerve growth factor family signature and profile
PDOC51525  1  NET domain profile
PDOC51774  1  Networked (NET) actin-binding (NAB) domain profile
PDOC51065  1  Neuralized homology repeat (NHR) domain profile
PDOC00202  1  Neuraxin and MAP1B proteins repeated region signature
PDOC00237  1  Neurohypophysial hormones signature
PDOC00747  1  Neuromedin U signature
PDOC00344  2  Neuromodulin (GAP-43) signatures
PDOC00209  1  Neurotransmitter-gated ion-channels signature
PDOC00129  1  Neutral zinc metallopeptidases, zinc-binding region signature
PDOC00924  2  NF-kappa-B/Rel/dorsal domain signature and profile
PDOC00578  3  NF-Y/HAP subunits signatures and profile
PDOC51125  1  NHL repeat profile
PDOC00688  2  Nickel-dependent hydrogenases b-type cytochrome subunit signatures
PDOC00400  2  Nickel-dependent hydrogenases large subunit signatures
PDOC51142  1  Nicotianamine synthase (NAS)-like family profile
PDOC51220  1  NIDO domain profile
PDOC50993  1  Nidogen G2 beta-barrel domain profile
PDOC51958  1  Nidoviral uridylate-specific endoribonuclease (NendoU) domain profile
PDOC51955  1  Nidovirus 2'-O-methyltransferase (2'-O-MTase) domain profile
PDOC51953  1  Nidovirus 3'-5' exoribonuclease (ExoN) domain profile
PDOC51947  1  Nidovirus RdRp-associated nucleotidyl transferase (NiRAN) domain profile
PDOC51652  2  Nidoviruses zinc-binding (ZBD) domain profiles
PDOC00580  3  NifH/frxC family signatures and profile
PDOC50906  1  Nitrate and nitrite sensing (NIT) domain profile
PDOC60001  1  Nitric oxide synthase (NOS) signature
PDOC00712  2  Nitrilases / cyanide hydratase signatures
PDOC00314  1  Nitrite and sulfite reductases iron-sulfur/siroheme-binding site
PDOC00085  2  Nitrogenases component 1 alpha and beta subunits signatures
PDOC51935  1  NlpC/P60 domain profile
PDOC00844  1  NNMT/PNMT/TEMT family of methyltransferases signature
PDOC51677  1  NodB homology domain profile
PDOC01047  1  Nodulation protein nodA signature
PDOC00888  1  NOL1/NOP2/sun family signature
PDOC51358  1  Nop domain profile
PDOC51537  1  Norovirus 3C-like protease (NV 3CLpro) domain profile
PDOC52053  1  Novel E3 ligase (NEL) domain profile
PDOC51649  1  NPH3 domain profile
PDOC51121  1  NtA (N-terminal agrin) domain profile
PDOC50189  1  NTR domain profile
PDOC00031  2  Nuclear hormone receptors DNA-binding domain signature and profile
PDOC51843  1  Nuclear receptor (NR) ligand-binding (LBD) domain profile
PDOC00467  1  Nuclear transition protein 1 signature
PDOC00749  2  Nuclear transition protein 2 signatures
PDOC50177  1  Nuclear transport factor 2 domain profile
PDOC00409  2  Nucleoside diphosphate kinase (NDPK) active site signature and NDPK-like domain profile
PDOC00695  3  Nudix hydrolase domain signatures and profile
PDOC51434  1  NUP C-terminal domain profile
PDOC50803  1  OAR domain profile
PDOC51881  1  Obg C-terminal (OCT) domain profile
PDOC51883  1  Obg domain profile
PDOC51710  1  OBG-type guanine nucleotide-binding (G) domain profile
PDOC52003  1  OCA domain profile
PDOC51980  1  Occludin/ELL (OCEL) domain profile
PDOC01017  1  Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase (lipB) signature
PDOC51316  1  Olduvai (ODV) domain profile
PDOC00639  1  Oleosins signature
PDOC51132  1  Olfactomedin-like domain profile
PDOC60023  1  Omega-agatoxin type II and III signature
PDOC60016  2  Omega-atracotoxin (ACTX) families signatures
PDOC00819  2  OmpA-like domain signature and profile
PDOC51755  1  OmpR/PhoB-type DNA-binding domain profile
PDOC51773  1  Orange carotenoid protein (OCP) N-terminal domain profile
PDOC51054  1  Orange domain profile
PDOC00685  2  Orn/DAP/Arg decarboxylases family 2 signatures
PDOC00585  1  Orn/Lys/Arg decarboxylases family 1 pyridoxal-phosphate attachment site
PDOC01039  1  Ornithine decarboxylase antizyme signature
PDOC00141  1  Orotidine 5'-phosphate decarboxylase active site
PDOC51644  1  OST-type HTH domain profile
PDOC00535  2  Osteonectin domain signatures
PDOC00689  1  Osteopontin signature
PDOC50802  1  OTU domain profile
PDOC51754  1  OVATE domain profile
PDOC00674  1  Oxygen oxidoreductases covalent FAD-binding site
PDOC00774  1  Oxysterol-binding protein family signature
PDOC51861  1  Oxytoxin-type inhibitor cystine knot (ICK) domain profile
PDOC00439  3  P-II protein family signatures and profile
PDOC00024  2  P-type ('Trefoil') domain signature and profile
PDOC00139  1  P-type ATPases phosphorylation site
PDOC51829  1  P/Homo B domain profile
PDOC00301  1  p53 family signature
PDOC51820  1  PA14 domain profile
PDOC51446  1  Pacifastin domain profile
PDOC52007  1  PADR1 zinc-binding domain profile
PDOC51477  1  PAH domain profile
PDOC00034  2  Paired DNA-binding domain signature and profile
PDOC00376  2  PAN/apple domain signature and profile
PDOC00238  2  Pancreatic hormone family signature and profile
PDOC00118  1  Pancreatic ribonuclease family signature
PDOC00252  2  Pancreatic trypsin inhibitor (Kunitz) family signature and profile
PDOC51013  1  Pannexin family profile
PDOC00296  1  Parathyroid hormone family signature
PDOC51059  2  PARP catalytic and alpha-helical domains profiles
PDOC52022  1  Parvovirus (PV) NS1 nuclease (NS1-Nuc) domain profile
PDOC50112  2  PAS repeat and PAC domain profiles
PDOC51178  1  PASTA domain profile
PDOC51635  1  Patatin-like phospholipase (PNPLA) domain profile
PDOC00437  1  Pathogenesis-related proteins Bet v I family signature
PDOC51398  1  PAW domain profile
PDOC50821  1  PAZ domain profile
PDOC51745  1  PB1 domain profile
PDOC51978  1  PBC domain profile
PDOC50250  1  PCI domain profile
PDOC51387  1  PCMH-type FAD-binding domain profile
PDOC00949  2  PdxS/SNZ family signature and profile
PDOC00950  2  PdxT/SNO family signature and profile
PDOC50106  1  PDZ domain profile
PDOC00413  2  Pectinesterase signatures
PDOC52052  1  PEHE domain profile
PDOC51375  1  Pentatricopeptide (PPR) repeat profile
PDOC00261  2  Pentraxin (PTX) domain signature and profile
PDOC00527  2  PEP-utilizing enzymes signatures
PDOC51817  1  Peptidase family A3B domain profile
PDOC51124  1  Peptidase family C16 domain profile
PDOC51738  1  Peptidase family C21 domain profile
PDOC51492  1  Peptidase family C23 domain profile
PDOC50990  1  Peptidase family C39 domain profile
PDOC52035  1  Peptidase family M14 domain profile
PDOC52011  1  Peptidase family M2 domain profile
PDOC52034  1  Peptidase family M32 domain profile
PDOC51723  1  Peptidase family M60 domain profile
PDOC51694  1  Peptidase family M66 domain profile
PDOC51868  1  Peptidase family S39 domain profile
PDOC51691  1  Peptidase family S6 domain profile
PDOC00982  1  Peptidase family U32 signature
PDOC00920  2  Peptidyl-tRNA hydrolase signatures
PDOC51826  1  Peripheral subunit-binding (PSBD) domain profile
PDOC00719  1  Peripherin / rom-1 signature
PDOC51876  1  Pestivirus N-terminal protease (Npro) domain profile
PDOC51692  1  Pestivirus nonstructural protein 2 (NS2) protease domain profile
PDOC51535  1  Pestivirus NS3 protease (NS3pro) domain profile
PDOC51303  1  PET domain profile
PDOC00504  2  pfkB family of carbohydrate kinases signatures
PDOC51276  1  PfpI endopeptidase domain profile
PDOC51394  1  PFU domain profile
PDOC51852  2  pG1 and pG2 pseudoGTPase domains profiles
PDOC50003  1  PH domain profile
PDOC00424  1  Phenylalanine and histidine ammonia-lyases active site
PDOC00103  3  Phosphagen kinase active site signature and N- and C-terminal domain profiles
PDOC01019  1  Phosphatidate cytidylyltransferase signature
PDOC00938  1  Phosphatidylethanolamine-binding protein family signature
PDOC00710  3  Phosphatidylinositol 3- and 4-kinases catalytic domain signatures and profile
PDOC51544  1  Phosphatidylinositol 3-kinase adaptor-binding (PI3K ABD) domain profile
PDOC51546  1  Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profiles
PDOC51545  1  Phosphatidylinositol kinase (PIK) helical domain profile
PDOC51455  1  Phosphatidylinositol phosphate kinase (PIPK) domain profile
PDOC50007  2  Phosphatidylinositol-specific phospholipase C profiles
PDOC00460  1  Phosphoenolpyruvate carboxykinase (ATP) signature
PDOC00421  1  Phosphoenolpyruvate carboxykinase (GTP) signature
PDOC00330  2  Phosphoenolpyruvate carboxylase active sites
PDOC00336  1  Phosphofructokinase signature
PDOC00589  1  Phosphoglucomutase and phosphomannomutase phosphoserine signature
PDOC00102  1  Phosphoglycerate kinase signature
PDOC00158  1  Phosphoglycerate mutase family phosphohistidine signature
PDOC60002  2  Phosphoketolase signatures
PDOC00109  2  Phospholipase A2 active sites signatures
PDOC50035  1  Phospholipase D phosphodiesterase active site profile
PDOC00746  2  Phosphomannose isomerase type I signatures
PDOC00105  1  Phosphoribosyl pyrophosphate synthase signature
PDOC00319  1  Phosphoribosylglycinamide formyltransferase active site
PDOC00164  1  Phosphoribosylglycinamide synthetase signature
PDOC00490  1  Phosphoribulokinase signature
PDOC00095  1  Phosphorylase pyridoxal-phosphate attachment site
PDOC01026  2  Phosphotriesterase family signature and profile
PDOC00907  1  Phosphotyrosine interaction domain (PID) profile
PDOC51645  1  Photolyase/cryptochrome alpha/beta domain profile
PDOC00217  1  Photosynthetic reaction center proteins signature
PDOC00347  1  Photosystem I psaA and psaB proteins signature
PDOC00786  1  Photosystem I psaG and psaK proteins signature
PDOC51445  1  Phycobilisome (PBS) linker domain profile
PDOC51443  1  Phytochelatin synthase (PCS) domain profile
PDOC00218  2  Phytochrome chromophore attachment site
PDOC51485  1  Phytocyanin domain profile
PDOC51874  1  Picornavirales 3C/3C-like protease domain profile
PDOC51466  1  PINIT domain profile
PDOC51532  1  PITH domain profile
PDOC50822  1  Piwi domain profile
PDOC51210  1  PLA2c domain profile
PDOC50900  1  PLAC domain profile
PDOC60011  1  Plant C6 type antimicrobial peptide (AMP) signature
PDOC00183  1  Plant hemoglobins signature
PDOC00516  1  Plant lipid transfer proteins signature
PDOC00244  1  Plant thionins signature
PDOC00480  1  Plant viruses icosahedral capsid proteins 'S' region signature
PDOC50095  1  PLAT domain profile
PDOC00222  2  Platelet-derived growth factor (PDGF) family signature and profile
PDOC51360  1  Plus3 domain profile
PDOC00939  2  PMP-22 / EMP / MP20 family signatures
PDOC51433  1  Pointed (PNT) domain profile
PDOC00715  1  Pollen proteins Ole e I family signature
PDOC50078  1  POLO box domain profile
PDOC51309  1  Poly(A)-binding protein C-terminal (PABC) domain profile
PDOC01033  2  Polyamine biosynthesis (PABS) domain signature and profile
PDOC50093  1  Polycystic kidney disease (PKD) domain profile
PDOC00415  1  Polygalacturonase active site
PDOC52019  1  Polyketide and metazoan fatty acid synthase dehydratase (PKS/mFAS DH) domain profile
PDOC00407  2  Polyprenyl synthases signatures
PDOC00461  1  Porphobilinogen deaminase cofactor-binding site
PDOC00257  1  Potato inhibitor I family signature
PDOC00346  1  Potexviruses and carlaviruses coat protein signature
PDOC51779  1  POTRA domain profile
PDOC51871  1  Potyviridae P1 protease domain profile
PDOC51436  1  Potyvirus NIa protease (NIa-pro) domain profile
PDOC00035  4  POU-specific (POUs) domain signatures and profile and POUs atypical domain profile
PDOC51742  1  PPC domain profile
PDOC00840  2  PpiC-type peptidyl-prolyl cis-trans isomerase signature and profile
PDOC00792  2  PPM-type phosphatase domain signature and profile
PDOC51858  1  PPPDE domain profile
PDOC00562  2  PRD domain profile and signature
PDOC50280  3  Pre-SET, post-SET and SET domain profiles
PDOC51014  1  Precorrin-6x reductase domain profile
PDOC50904  1  PRELI/MSF1 domain profile
PDOC00266  1  Prenyl group binding site (CAAX box)
PDOC00671  3  Prephenate dehydratase domain signatures and profile
PDOC51176  1  Prephenate/arogenate dehydrogenase domain profile
PDOC00263  2  Prion protein signatures
PDOC00372  1  Profilin signature
PDOC00820  1  Prokaryotic diacylglycerol kinase signature
PDOC00846  2  Prokaryotic dksA C4-type zinc finger signature and profile
PDOC00013  1  Prokaryotic membrane lipoprotein lipid attachment site profile
PDOC00392  4  Prokaryotic molybdopterin oxidoreductases signatures and 4Fe-4S domain profile
PDOC00342  1  Prokaryotic N-terminal methylation site
PDOC00337  2  Prokaryotic sulfate- and thiosulfate-binding proteins signatures
PDOC00651  2  Prokaryotic transcription elongation factors signatures
PDOC00713  1  Prokaryotic transglycosylases signature
PDOC00357  2  Prokaryotic zinc-dependent phospholipase C domain signature and profile
PDOC00586  2  Prokaryotic-type carbonic anhydrases signatures
PDOC00607  1  Prokaryotic-type class I peptide chain release factors signature
PDOC00265  2  Proliferating cell nuclear antigen signatures
PDOC01015  1  Prolipoprotein diacylglyceryl transferase signature
PDOC00587  1  Prolyl oligopeptidase family serine active site
PDOC51334  1  PRONE domain profile
PDOC00047  1  Protamine P1 signature
PDOC00326  2  Proteasome alpha-type subunit signature and profile
PDOC00668  2  Proteasome beta-type subunit signature and profile
PDOC00005  1  Protein kinase C phosphorylation site
PDOC00100  4  Protein kinases signatures and profile
PDOC00785  2  Protein phosphatase 2A regulatory subunit PR55 signatures
PDOC00703  1  Protein prenyltransferases alpha subunit repeat profile
PDOC00818  1  Protein secE/sec61-gamma signature
PDOC00612  2  Protein secY signatures
PDOC00985  1  Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature
PDOC00933  1  Protozoan/cyanobacterial globins signature
PDOC51917  1  Pru (pleckstrin-like receptor for the Ub) domain profile
PDOC51411  1  PSP1 C-terminal domain profile
PDOC50960  1  Psq-type HTH domain profile
PDOC50972  1  Pterin-binding domain profile
PDOC00540  2  PTN/MK heparin-binding protein family signatures
PDOC00784  2  PTR2 family proton/oligopeptide symporters signatures
PDOC00528  7  PTS EIIA domain profiles and phosphorylation site signatures
PDOC00795  6  PTS EIIB domain profiles and cysteine phosphorylation site signature
PDOC51103  5  PTS EIIC domain profiles
PDOC51108  1  PTS EIID domain profile
PDOC00318  3  PTS HPr domain profile and phosphorylation sites signatures
PDOC50890  1  PUA domain profile
PDOC51396  1  PUL domain profile
PDOC50302  2  Pumilio RNA-binding repeat and homology domain profiles
PDOC00946  1  Purine and other phosphorylases family 1 signature
PDOC00954  1  Purine and other phosphorylases family 2 signature
PDOC00096  1  Purine/pyrimidine phosphoribosyl transferases signature
PDOC00427  1  Putative AMP-binding domain signature
PDOC51025  1  PWI domain profile
PDOC50812  1  PWWP domain profile
PDOC50195  1  PX domain profile
PDOC51207  1  PXA domain profile
PDOC00073  1  Pyridine nucleotide-disulphide oxidoreductases class-I active site
PDOC00496  1  Pyridine nucleotide-disulphide oxidoreductases class-II active site
PDOC00815  1  Pyridoxamine 5'-phosphate oxidase signature
PDOC00466  1  Pyrokinins signature
PDOC01036  2  Pyrrolidone-carboxylate peptidase active sites
PDOC50991  1  Pyruvate carboxyltransferase domain profile
PDOC51554  1  Pyruvate formate lyase (PFL) domain profile
PDOC00101  1  Pyruvate kinase active site signature
PDOC51666  1  QLQ domain profile
PDOC51370  1  R domain profile
PDOC51061  1  R3H domain profile
PDOC50916  1  Rab-binding domain profile
PDOC51131  1  Rad50 zinc-hook domain profile
PDOC00834  1  Radical activating enzymes signature
PDOC51918  1  Radical SAM core domain profile
PDOC50196  1  Ran binding domain type 1 profile
PDOC51286  1  RAP domain profile
PDOC50085  1  Rap GTPase activating proteins domain profile
PDOC00438  2  Ras GTPase-activating proteins (rasGAP) domain signature and profile
PDOC00594  3  Ras guanine-nucleotide exchange factors domain signature and profiles
PDOC50200  1  Ras-associating (RA) domain profile
PDOC50898  1  Ras-binding domain (RBD) profile
PDOC51201  2  RCK N-terminal and C-terminal domain profiles
PDOC00131  3  recA family signature and profiles
PDOC00212  1  Receptor tyrosine kinase class II signature
PDOC00213  1  Receptor tyrosine kinase class III signature
PDOC00629  2  Receptor tyrosine kinase class V signatures
PDOC00539  2  recF protein signatures
PDOC01004  1  recR protein signature
PDOC51019  1  Reelin domain profile
PDOC00544  3  Regulator of chromosome condensation (RCC1) signatures and profile
PDOC51111  1  REJ domain profile
PDOC51486  1  REKLES domain profile
PDOC51860  1  REM-1 domain profile
PDOC00678  2  Renal dipeptidase family signature and profile
PDOC00858  1  Respiratory-chain NADH dehydrogenase 20 Kd subunit signature
PDOC00843  1  Respiratory-chain NADH dehydrogenase 24 Kd subunit signature
PDOC00468  1  Respiratory-chain NADH dehydrogenase 30 Kd subunit signature
PDOC00521  1  Respiratory-chain NADH dehydrogenase 49 Kd subunit signature
PDOC00555  2  Respiratory-chain NADH dehydrogenase 51 Kd subunit signatures
PDOC00554  3  Respiratory-chain NADH dehydrogenase 75 Kd subunit signatures
PDOC00570  2  Respiratory-chain NADH dehydrogenase subunit 1 signatures
PDOC50110  1  Response regulatory domain profile
PDOC50845  1  Reticulon domain profile
PDOC50878  1  Reverse transcriptase (RT) catalytic domain profile
PDOC51526  1  RFX-type winged-helix DNA-binding domain profile
PDOC50132  1  RGS domain profile
PDOC51776  1  RH1 domain profile
PDOC51777  1  RH2 domain profile
PDOC50238  1  Rho GTPase-activating proteins domain profile
PDOC51232  1  Rho GTPase-binding/formin homology 3 (GBD/FH3) domain profile
PDOC51856  1  Rho RNA-binding (RNA-BD) domain profile
PDOC51859  1  Rho-binding (RhoBD) domain profile
PDOC00322  3  Rhodanese signatures and profile
PDOC00581  1  Riboflavin synthase alpha chain lumazine-binding repeat profile
PDOC50879  2  Ribonuclease (RNase) H type-I and type-2 domains profiles
PDOC00904  1  Ribonuclease II family signature
PDOC00448  2  Ribonuclease III family signature and profile
PDOC00983  1  Ribonuclease PH signature
PDOC00459  2  Ribonuclease T2 family histidine active sites
PDOC00084  1  Ribonucleotide reductase large subunit signature
PDOC00317  1  Ribonucleotide reductase small subunit signature
PDOC00922  1  Ribosomal protein L1 signature
PDOC00853  1  Ribosomal protein L10 signature
PDOC00968  1  Ribosomal protein L10e signature
PDOC00310  1  Ribosomal protein L11 signature
PDOC00625  1  Ribosomal protein L13 signature
PDOC00848  1  Ribosomal protein L13e signature
PDOC00048  1  Ribosomal protein L14 signature
PDOC00386  1  Ribosomal protein L15 signature
PDOC00919  1  Ribosomal protein L15e signature
PDOC00506  2  Ribosomal protein L16 signatures
PDOC00897  1  Ribosomal protein L17 signature
PDOC00850  1  Ribosomal protein L18e signature
PDOC00778  1  Ribosomal protein L19 signature
PDOC00455  1  Ribosomal protein L19e signature
PDOC00724  1  Ribosomal protein L1e signature
PDOC00384  1  Ribosomal protein L2 signature
PDOC00722  1  Ribosomal protein L20 signature
PDOC00899  1  Ribosomal protein L21 signature
PDOC00901  1  Ribosomal protein L21e signature
PDOC00387  1  Ribosomal protein L22 signature
PDOC00049  1  Ribosomal protein L23 signature
PDOC00852  1  Ribosomal protein L24 signature
PDOC00824  1  Ribosomal protein L24e signature
PDOC00652  1  Ribosomal protein L27 signature
PDOC00851  1  Ribosomal protein L27e signature
PDOC00501  1  Ribosomal protein L29 signature
PDOC00385  1  Ribosomal protein L3 signature
PDOC00551  1  Ribosomal protein L30 signature
PDOC00588  2  Ribosomal protein L30e signatures
PDOC00880  1  Ribosomal protein L31 signature
PDOC00881  1  Ribosomal protein L31e signature
PDOC00502  1  Ribosomal protein L32e signature
PDOC00503  1  Ribosomal protein L33 signature
PDOC00626  1  Ribosomal protein L34 signature
PDOC00882  1  Ribosomal protein L34e signature
PDOC00721  1  Ribosomal protein L35 signature
PDOC00849  1  Ribosomal protein L35Ae signature
PDOC00650  1  Ribosomal protein L36 signature
PDOC00916  1  Ribosomal protein L36e signature
PDOC00827  1  Ribosomal protein L37e signature
PDOC00050  1  Ribosomal protein L39e signature
PDOC00902  1  Ribosomal protein L44e signature
PDOC00309  1  Ribosomal protein L5 signature
PDOC00454  2  Ribosomal protein L6 signatures
PDOC00900  1  Ribosomal protein L6e signature
PDOC00831  1  Ribosomal protein L7Ae signature
PDOC00560  1  Ribosomal protein L9 signature
PDOC00312  1  Ribosomal protein S10 signature
PDOC00053  1  Ribosomal protein S11 signature
PDOC00054  1  Ribosomal protein S12 signature
PDOC00915  1  Ribosomal protein S12e signature
PDOC00556  2  Ribosomal protein S13 signature and profile
PDOC00456  1  Ribosomal protein S14 signature
PDOC00313  1  Ribosomal protein S15 signature
PDOC00600  1  Ribosomal protein S16 signature
PDOC00055  1  Ribosomal protein S17 signature
PDOC00590  1  Ribosomal protein S17e signature
PDOC00056  1  Ribosomal protein S18 signature
PDOC00288  1  Ribosomal protein S19 signature
PDOC00546  1  Ribosomal protein S19e signature
PDOC00744  2  Ribosomal protein S2 signatures
PDOC00909  1  Ribosomal protein S21 signature
PDOC00764  1  Ribosomal protein S21e signature
PDOC00458  1  Ribosomal protein S24e signature
PDOC00601  1  Ribosomal protein S26e signature
PDOC00898  1  Ribosomal protein S27e signature
PDOC00743  1  Ribosomal protein S28e signature
PDOC00474  1  Ribosomal protein S3 signature
PDOC00917  1  Ribosomal protein S3Ae signature
PDOC00549  1  Ribosomal protein S4 signature
PDOC00457  1  Ribosomal protein S4e signature
PDOC00505  2  Ribosomal protein S5 signature and profile
PDOC00805  1  Ribosomal protein S6 signature
PDOC00500  1  Ribosomal protein S6e signature
PDOC00051  1  Ribosomal protein S7 signature
PDOC00730  1  Ribosomal protein S7e signature
PDOC00052  1  Ribosomal protein S8 signature
PDOC00918  1  Ribosomal protein S8e signature
PDOC00311  1  Ribosomal protein S9 signature
PDOC00871  1  Ribosomal RNA adenine dimethylases signature
PDOC01023  1  Ribosome-binding factor A signature
PDOC00142  1  Ribulose bisphosphate carboxylase large chain active site
PDOC00833  2  Ribulose-phosphate 3-epimerase family signatures
PDOC00177  1  Rieske [2Fe-2S] iron-sulfur domain profile
PDOC51789  1  RIG-I-like receptor (RLR) C-terminal regulatory (CTR) domain profile
PDOC51386  1  RINT1/TIP20 domain profile
PDOC00958  1  RIO1/ZK632.3/MJ0444 family signature
PDOC00869  1  Rlu family of pseudouridine synthase signature
PDOC00989  1  RNA 3'-terminal phosphate cyclase signature
PDOC00945  2  RNA methyltransferase trmA family signatures
PDOC00896  1  RNA polymerases beta chain signature
PDOC00411  1  RNA polymerases D / 30 to 40 Kd subunits signature
PDOC00854  1  RNA polymerases H / 23 Kd subunits signature
PDOC00855  1  RNA polymerases K / 14 to 18 Kd subunits signature
PDOC00889  1  RNA polymerases L / 13 to 16 Kd subunits signature
PDOC00790  1  RNA polymerases M / 15 Kd subunits signature
PDOC00856  1  RNA polymerases N / 8 Kd subunits signature
PDOC50507  6  RNA-directed RNA polymerase catalytic domain profiles
PDOC51472  1  RNA-recognition motif (RRM) Nup35-type domain profile
PDOC00866  1  ROK family signature
PDOC51073  1  RPEL repeat profile
PDOC51071  1  RpiR-type HTH domain profile
PDOC51153  1  RPW8 domain profile
PDOC01035  2  Rrf2-type HTH domain profile
PDOC51849  1  RsgI N-terminal anti-sigma domain profile
PDOC00998  1  RsmI AdoMet-dependent methyltransferase protein family signature
PDOC51879  1  RST domain profiles
PDOC00885  1  Rsu family of pseudouridine synthase signature
PDOC51728  1  Rtt109-type histone acetyltransferase (HAT) domain profile
PDOC51889  1  Rubella virus (RUBV) nonstructural (NS) protease domain profile
PDOC00179  1  Rubredoxin signature
PDOC50903  1  Rubredoxin-like domain profile
PDOC50826  1  RUN domain profile
PDOC51062  1  Runt domain profile
PDOC50908  1  RWD domain profile
PDOC51519  1  RWP-RK domain profile
PDOC00275  1  S-100/ICaBP type calcium binding protein signature
PDOC00603  2  S-adenosyl-L-homocysteine hydrolase signatures
PDOC01038  1  S-adenosylmethionine decarboxylase signature
PDOC00369  2  S-adenosylmethionine synthase signatures
PDOC00823  1  S-layer homology (SLH) domain profile
PDOC50126  2  S1 domain profiles
PDOC50889  1  S4 RNA-binding domain profile
PDOC50275  1  Sac phosphatase domain profile
PDOC00810  2  SAICAR synthetase signatures
PDOC50105  1  SAM domain profile
PDOC52014  1  SAMD1-like winged helix (WH) domain profile
PDOC50864  1  SAND domain profile
PDOC51293  1  SANT domain profile
PDOC50800  1  SAP motif profile
PDOC51110  1  Saposin A-type domain profile
PDOC50015  1  Saposin B-type domain profile
PDOC50951  1  SARAH domain profile
PDOC51920  1  Sarbecovirus 9b domain profile
PDOC51940  2  Sarbecovirus Nsp3c-N and Betacoronavirus Nsp3c-M domains profiles
PDOC51919  1  Sarbecovirus X4e domain profile
PDOC51964  1  SARS ORF8 accessory protein immunoglobulin (Ig)-like domain profile
PDOC51505  1  SCA7 domain profile
PDOC50804  1  SCAN box profile
PDOC60028  1  Scorpion calcine family signature
PDOC51200  1  Scorpion short toxin chloride channel inhibitor subfamily profile
PDOC00875  1  Scorpion short toxins signature
PDOC50024  1  SEA domain profile
PDOC50190  1  SEC7 domain profile
PDOC01016  2  SecA family signature and profile
PDOC00338  1  Secretoglobin (SCGB) family profile
PDOC51695  1  Sedolisin domain profile
PDOC51534  1  SEFIR domain profile
PDOC51004  1  Sema domain profile
PDOC00282  1  Seminal vesicle protein I repeats signature
PDOC00446  1  Seminal vesicle protein II repeats signature
PDOC51399  1  SEP domain profile
PDOC51700  1  SEPARIN core domain profile
PDOC51719  1  Septin-type guanine nucleotide-binding (G) domain profile
PDOC50099  20 Sequence regions enriched in a particular amino acid profiles
PDOC00122  2  Serine carboxypeptidases, active sites
PDOC00090  1  Serine hydroxymethyltransferase pyridoxal-phosphate attachment site
PDOC00125  4  Serine proteases, subtilase family, active sites signatures and domain profile
PDOC00124  3  Serine proteases, trypsin family, signatures and profile
PDOC00571  2  Serine proteases, V8 family, active sites
PDOC00149  1  Serine/threonine dehydratases pyridoxal-phosphate attachment site
PDOC00115  1  Serine/threonine specific protein phosphatases signature
PDOC00256  1  Serpins signature
PDOC51053  1  SERTA domain profile
PDOC00762  1  Serum amyloid A proteins signature
PDOC51518  1  SGF29 C-terminal domain profile
PDOC51048  1  SGS domain profile
PDOC51781  1  SH3b domain profile
PDOC00248  1  Shiga/ricin ribosomal inactivating toxins active site signature
PDOC00868  1  Shikimate kinase signature
PDOC51670  1  ShKT domain profile
PDOC01053  1  Short hematopoietin receptor family 1 signature
PDOC01054  1  Short hematopoietin receptor family 2 signature
PDOC00060  1  Short-chain dehydrogenases/reductases family signature
PDOC00593  3  Sigma-54 factors family signatures and profile
PDOC00579  4  Sigma-54 interaction domain signatures and profile
PDOC00814  1  Sigma-70 factors ECF subfamily signature
PDOC00592  2  Sigma-70 factors family signatures
PDOC00418  3  Signal peptidases I signatures
PDOC00669  1  Signal peptidases II signature
PDOC51500  1  Sin domain profile
PDOC51302  1  Single-minded C-terminal domain profile
PDOC00602  1  Single-strand binding (SSB) domain profile
PDOC50305  1  Sirtuin catalytic domain profile
PDOC51464  1  SIS domain profile
PDOC00334  3  Site-specific recombinase catalytic domain signatures and profile
PDOC00870  1  SLC26A transporters signature
PDOC52002  1  Sm domain profile
PDOC00434  2  Small cytokines (intercrine/chemokine) signatures
PDOC51417  8  Small GTPase domains profiles
PDOC00791  1  Small heat shock protein (sHSP) domain profile
PDOC00355  1  Small hydrophilic plant seed proteins signature
PDOC00276  2  Small, acid-soluble spore proteins, alpha/beta type, signatures
PDOC50828  1  Smr domain profile
PDOC00245  1  Snake toxins signature
PDOC50225  1  SOCS box domain profile
PDOC00328  2  Sodium and potassium ATPases beta subunits signatures
PDOC00681  1  Sodium:alanine symporter family signature
PDOC00591  2  Sodium:dicarboxylate symporter family signatures
PDOC00680  1  Sodium:galactoside symporter family signature
PDOC00533  3  Sodium:neurotransmitter symporter family signatures and profile
PDOC00429  3  Sodium:solute symporter family signatures and profile
PDOC00978  1  Sodium:sulfate symporter family signature
PDOC50831  1  SoHo domain profile
PDOC50404  2  Soluble glutathione S-transferase N- and C-terminal domain profiles
PDOC00189  1  Solute carrier (Solcar) repeat profile
PDOC00453  2  Somatomedin B (SMB) domain signature and profile
PDOC00239  2  Somatotropin, prolactin and related hormones signatures
PDOC51516  1  Sox C-terminal domain profile
PDOC00255  1  Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature
PDOC00758  2  Spermadhesins family signatures
PDOC60029  1  Spider toxin CSTX family signature
PDOC50917  1  SPOC domain profile
PDOC51494  1  SpoIVB peptidase domain profile
PDOC51020  1  Spondin domain profile
PDOC51724  1  SPOR domain profile
PDOC51740  1  SpoVT-AbrB domain profile
PDOC51227  1  Sprouty (SPR) domain profile
PDOC51382  1  SPX domain profile
PDOC00802  2  Squalene and phytoene synthases signatures
PDOC00258  1  Squash family of serine protease inhibitors signature
PDOC50001  1  Src homology 2 (SH2) domain profile
PDOC50002  1  Src homology 3 (SH3) domain profile
PDOC00348  2  SRCR domain signature and profile
PDOC00272  1  SRP54-type proteins GTP-binding domain signature
PDOC01021  1  SsrA-binding protein
PDOC00353  1  Staphylocoagulase repeat signature
PDOC00250  2  Staphylococcal enterotoxins / Streptococcal pyrogenic exotoxins signatures
PDOC50848  1  START domain profile
PDOC50801  1  STAS domain profile
PDOC00487  3  Stathmin family signatures and stathmin-like (SLD) domain profile
PDOC51312  3  Steadiness box, VPS28 N-terminal and VPS37 C-terminal domains profiles
PDOC50244  1  Steroid 5-alpha reductase C-terminal domain profile
PDOC00780  2  Sterol reductase family signatures
PDOC50156  1  Sterol-sensing domain (SSD) profile
PDOC51070  1  Stonin homology domain (SHD) profile
PDOC52028  2  Streptococcal M proteins C repeat and D repeats region profiles
PDOC51965  1  Streptococcus antigen I/II alanine-rich (Ag I/II A) repeat profile
PDOC00766  1  Streptomyces subtilisin-type inhibitors signature
PDOC00596  1  Stress-induced proteins SRP1/TIP1 family signature
PDOC51502  1  Stress-response A/B barrel domain profile
PDOC51425  1  Stromalin conservative (SCD) domain profile
PDOC00767  2  Succinate dehydrogenase cytochrome b subunit signatures
PDOC50228  1  SUEL-type lectin domain profile
PDOC00190  2  Sugar transport proteins signatures
PDOC00117  2  Sulfatases signatures
PDOC51469  1  SUN domain profile
PDOC51192  3  Superfamilies 1 and 2 helicase domain profiles
PDOC51206  2  Superfamily 3 helicase domain profile
PDOC51199  1  Superfamily 4 helicase domain profile
PDOC01040  1  SURF1 family profile
PDOC01041  1  SURF4 family signature
PDOC00298  1  Surfactant associated polypeptide SP-C palmitoylation sites
PDOC50128  1  SURP motif repeat profile
PDOC50923  1  Sushi/CCP/SCR domain profile
PDOC51673  1  SUZ domain profile
PDOC51938  1  SUZ-C domain profile
PDOC51925  1  SWIB/MDM2 domain profile
PDOC50934  1  SWIRM domain profile
PDOC00345  2  Synapsins signatures
PDOC00368  1  Synaptobrevin signature
PDOC00525  1  Synaptophysin / synaptoporin signature
PDOC51847  1  Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile
PDOC00745  1  Syndecans signature
PDOC00709  1  Syntaxin / epimorphin family signature
PDOC00972  3  T-box domain signatures and profile
PDOC50192  1  t-SNARE coiled-coil homology domain profile
PDOC00240  1  Tachykinin family signature
PDOC51119  1  TAFH/NHR1 domain profile
PDOC51281  1  TAP C-terminal (TAP-C) domain profile
PDOC00936  1  TatC family signature
PDOC00836  3  TatD deoxyribonuclease family
PDOC00201  2  Tau and MAP proteins tubulin-binding repeat signature and profile
PDOC50086  1  TBC/rab GAP domain profile
PDOC51369  1  TCP domain profile
PDOC00479  2  TEA domain signature and profile
PDOC51361  1  Teneurin N-terminal domain profile
PDOC51181  2  Tensin phosphatase and C2 domain profiles
PDOC51226  1  TEP1 N-terminal repeat profile
PDOC00825  1  Terpene synthases signature
PDOC00830  2  TetR-type HTH domain signature and profile
PDOC00316  2  Tetrahydrobiopterin-dependent aromatic amino acid hydroxylase family signature and profile
PDOC00616  2  Tetrahydrofolate dehydrogenase/cyclohydrolase signatures
PDOC51344  1  TFE/IIEalpha-type HTH domain profile
PDOC51351  1  TFIIE beta central core DNA-binding domain profile
PDOC51321  1  TFIIS central domain profile
PDOC51319  1  TFIIS N-terminal domain profile
PDOC51364  1  TGF-beta binding (TB) domain profile
PDOC00223  2  TGF-beta family signature and profile
PDOC51880  1  TGS domain profile
PDOC00286  2  Thaumatin family signature and profile
PDOC00865  3  Thermonuclease domain signatures and profile
PDOC00166  1  Thiamine pyrophosphate enzymes signature
PDOC00436  1  Thiol-activated cytolysins signature
PDOC00092  3  Thiolases signatures
PDOC00172  2  Thioredoxin family active site signature and domain profile
PDOC51236  1  Thrombospondin C-terminal domain profile
PDOC50092  1  Thrombospondin type-1 (TSP1) repeat profile
PDOC51234  1  Thrombospondin type-3 (TSP3) repeat profile
PDOC51165  1  THUMP domain profile
PDOC00557  1  Thymidine and pyrimidine-nucleoside phosphorylases signature
PDOC00524  1  Thymidine kinase cellular-type signature
PDOC01034  1  Thymidylate kinase signature
PDOC00086  1  Thymidylate synthase active site
PDOC00433  1  Thymosin beta-4 family signature
PDOC00377  2  Thyroglobulin type-1 domain signature and profile
PDOC51320  1  Tify domain profile
PDOC50104  1  TIR domain profile
PDOC00541  1  Tissue factor signature
PDOC00260  1  Tissue inhibitors of metalloproteinases signature
PDOC50922  1  TLC domain profile
PDOC51886  1  TLDc domain profile
PDOC00561  2  TNFR/NGFR family cysteine-rich region signature and profile
PDOC52015  1  TonB C-terminal domain profile
PDOC00354  3  TonB-dependent receptor (TBDR) proteins signatures and profile
PDOC00333  2  Topoisomerase (Topo) IA-type active site signature and catalytic domain profile
PDOC00159  2  Topoisomerase (Topo) IB-type active site signature and catalytic domain profile
PDOC52040  1  Topoisomerase (Topo) IIA-type catalytic domain profile
PDOC52041  1  Topoisomerase (Topo) IIB-type catalytic domain profile
PDOC50880  1  Toprim domain profile
PDOC51996  1  Toxin-related mono-ADP-ribosyltransferase (TR mART) core domain profile
PDOC50005  2  TPR repeat profiles
PDOC00973  1  Tpx family signature
PDOC50926  1  TRAM domain profile
PDOC00741  2  Transaldolase signatures
PDOC00624  1  Transcription factor TFIIB repeat signature
PDOC00303  1  Transcription factor TFIID repeat signature
PDOC00775  1  Transcription termination factor nusG signature
PDOC00182  4  Transferrin-like domain signatures and profile
PDOC00473  1  Transglutaminases active site
PDOC00635  2  Transketolase signatures
PDOC00862  1  Translation initiation factor SUI1 profile
PDOC00273  2  Translational (tr)-type guanine nucleotide-binding (G) domain signature and profile
PDOC00768  3  Translationally controlled tumor protein (TCTP) domain signatures and profile
PDOC00371  1  Transmembrane 4 family signature
PDOC00801  1  Transposases, IS30 family, signature
PDOC00770  1  Transposases, Mutator family, signature
PDOC00617  2  Transthyretin signatures
PDOC00717  2  Trehalase signatures
PDOC51873  1  TRIAD supradomain profile
PDOC00155  2  Triosephosphate isomerase (TIM) family signature and profile
PDOC50211  4  Tripartite DENN domain profiles
PDOC51709  1  TrmE-type guanine nucleotide-binding (G) domain profile
PDOC50886  1  tRNA-binding domain profile
PDOC00290  1  Tropomyosins signature
PDOC50988  1  TROVE domain profile
PDOC00574  3  Trp-Asp (WD-40) repeats signature and profiles
PDOC50984  1  TRUD domain profile
PDOC00151  1  Tryptophan synthase alpha chain signature
PDOC00152  1  Tryptophan synthase beta chain pyridoxal-phosphate attachment site
PDOC01022  2  TsaA-like domain signature and profile
PDOC00991  1  TSC-22 / dip / bun family signature
PDOC51221  1  TTL domain profile
PDOC00923  2  Tub family signatures
PDOC00199  1  Tubulin subunits alpha, beta, and gamma signature
PDOC00200  1  Tubulin-beta mRNA autoregulation signal
PDOC50304  1  Tudor domain profile
PDOC00224  2  Tumor necrosis factor (TNF) homology domain (THD) signature and profile
PDOC51318  1  Twin arginine translocation (Tat) signal profile
PDOC00174  1  Type-1 copper (blue) proteins signature
PDOC00398  2  Tyrosinase signatures
PDOC00007  2  Tyrosine kinase phosphorylation sites
PDOC51898  2  Tyrosine recombinase domains profiles
PDOC00323  4  Tyrosine specific protein phosphatases active site signature and domains profiles
PDOC51698  1  U-box domain profile
PDOC00727  1  UbiA prenyltransferase family signature
PDOC00911  2  ubiE/COQ5 methyltransferase family signatures
PDOC01008  1  ubiH/COQ6 monooxygenase family signature
PDOC52048  1  Ubiquitin carboxyl-terminal hydrolase (UCH) catalytic domain profile
PDOC00127  1  Ubiquitin carboxyl-terminal hydrolases family 1 cysteine active site
PDOC00271  2  Ubiquitin domain signature and profile
PDOC00750  3  Ubiquitin specific protease (USP) domain signatures and profile
PDOC00463  2  Ubiquitin-activating enzyme signatures
PDOC50030  1  Ubiquitin-associated domain (UBA) profile
PDOC00163  2  Ubiquitin-conjugating (UBC) active site signature and core domain profile
PDOC50330  1  Ubiquitin-interacting motif (UIM) domain profile
PDOC50600  1  Ubiquitin-like protease family profile
PDOC52043  1  UBR4 E3 catalytic module profile
PDOC50033  1  UBX domain profile
PDOC52049  1  UCH37-like (ULD) domain profile
PDOC00359  1  UDP-glycosyltransferases signature
PDOC51322  1  UEV domain profile
PDOC51497  1  UMA domain profile
PDOC50173  1  UmuC domain profile
PDOC00931  1  Uncharacterized protein family UPF0001 signature
PDOC00959  1  Uncharacterized protein family UPF0003 signature
PDOC00943  1  Uncharacterized protein family UPF0012 signature
PDOC00934  1  Uncharacterized protein family UPF0016 signature
PDOC00872  1  Uncharacterized protein family UPF0017 signature
PDOC00969  1  Uncharacterized protein family UPF0020 signature
PDOC00971  1  Uncharacterized protein family UPF0021 signature
PDOC00974  1  Uncharacterized protein family UPF0023 signature
PDOC00975  1  Uncharacterized protein family UPF0024 signature
PDOC00976  1  Uncharacterized protein family UPF0025 signature
PDOC00990  1  Uncharacterized protein family UPF0027 signature
PDOC00951  1  Uncharacterized protein family UPF0028 signature
PDOC00707  1  Uncharacterized protein family UPF0029 signature
PDOC00884  1  Uncharacterized protein family UPF0033 signature
PDOC00874  1  Uncharacterized protein family UPF0034 signature
PDOC00994  1  Uncharacterized protein family UPF0036 signature
PDOC01018  1  Uncharacterized protein family UPF0047 signature
PDOC01010  1  Uncharacterized protein family UPF0054 signature
PDOC01013  1  Uncharacterized protein family UPF0057 signature
PDOC01024  1  Uncharacterized protein family UPF0067 signature
PDOC00838  1  Uncharacterized protein family UPF0076 signature
PDOC01006  1  Uncharacterized protein family UPF0758 signature
PDOC00817  1  Undecaprenyl pyrophosphate synthase family signature
PDOC51997  1  Upf1 cysteine-histidine-rich (CH-rich) domain profile
PDOC00121  1  Uracil-DNA glycosylase signature
PDOC00133  3  Urease domain signatures and profile
PDOC00315  1  Uricase signature
PDOC00947  1  Urocanase signature
PDOC00656  2  Uroporphyrin-III C-methyltransferase signatures
PDOC00705  2  Uroporphyrinogen decarboxylase signatures
PDOC00757  1  Urotensin II signature
PDOC50151  1  UVR domain profile
PDOC50165  1  UvrC family homology region profile
PDOC51198  2  UvrD-like DNA helicase domain profiles
PDOC50892  1  v-SNARE coiled-coil homology domain profile
PDOC51778  1  VASt domain profile
PDOC51821  1  Velvet domain profile
PDOC00180  1  Vertebrate metallothioneins signature
PDOC51717  1  Very large inducible GTPase (VLIG)-type guanine nucleotide-binding (G) domain profile
PDOC50179  1  VHS domain profile
PDOC51819  1  Vicinal oxygen chelate (VOC) domain profile
PDOC00568  2  Vinculin family signatures
PDOC00211  1  Visual pigments (opsins) retinal binding site
PDOC51468  1  VIT domain profile
PDOC51211  1  Vitellogenin domain profile
PDOC51137  1  VM domain profile
PDOC52044  1  Vms1-like release factor 1 (VLRF1) domain profile
PDOC51310  1  VPS28 C-terminal domain profile
PDOC51205  1  VPS9 domain profile
PDOC50234  1  VWFA domain profile
PDOC00928  2  VWFC domain signature and profile
PDOC51233  1  VWFD domain profile
PDOC51363  1  W2 domain profile
PDOC51136  1  WAC domain profile
PDOC00026  1  WAP-type 'four-disulfide core' domain profile
PDOC51271  1  WAPL domain profile
PDOC51977  1  WGR domain profile
PDOC50229  1  WH1 domain profile
PDOC51082  1  WH2 domain profile
PDOC00614  2  WHEP-TRS domain signature and profile
PDOC50814  1  WIF domain profile
PDOC51397  1  WLM domain profile
PDOC00219  1  Wnt-1 family signature
PDOC51667  1  WRC domain profile
PDOC50811  1  WRKY domain profile
PDOC51212  1  WSC domain profile
PDOC50020  2  WW/rsp5/WWP domain signature and profile
PDOC50918  1  WWE domain profile
PDOC52050  1  WYL domain profile
PDOC00860  1  Xanthine/uracil permeases family signature
PDOC51389  1  Xin repeat profile
PDOC00611  2  XPA protein signatures
PDOC00658  2  XPG protein signatures
PDOC51827  1  XRN2-binding (XTBD) domain profile
PDOC51939  1  xRRM domain profile
PDOC00156  1  Xylose isomerase family profile
PDOC51664  1  YcaO domain profile
PDOC51648  1  YcgL domain profile
PDOC51015  1  YDG domain profile
PDOC00718  2  Yeast PIR proteins repeats signature and profile
PDOC51037  1  YEATS domain profile
PDOC51979  1  YebF/Cmi domain profile
PDOC51792  1  Yippee domain profile
PDOC00806  3  YjeF C-terminal domain signatures and profile
PDOC51385  1  YjeF N-terminal domain profile
PDOC00883  1  YrdC-like domain profile
PDOC50882  1  YTH domain profile
PDOC50139  1  Z-binding domain profile
PDOC51915  1  ZAD domain profile
PDOC00123  2  Zinc carboxypeptidases, zinc-binding regions signatures
PDOC51036  1  Zinc finger A20-type profile
PDOC51039  1  Zinc finger AN1-type profile
PDOC50119  1  Zinc finger B-box-type profile
PDOC50808  1  Zinc finger BED-type profile
PDOC51113  1  Zinc finger Btk-type profile
PDOC51799  1  Zinc finger C2H2 AKAP95-type profile
PDOC00028  2  Zinc finger C2H2-type domain signature and profile
PDOC51807  1  Zinc finger C2HC baculovirus (BV)-type profile
PDOC51804  1  Zinc finger C2HC LYAR-type profile
PDOC52046  1  Zinc finger C2HC NPR-type profile
PDOC51803  1  Zinc finger C2HC RNF-type profile
PDOC52027  1  Zinc finger C2HC/C3H-type profile
PDOC50103  1  Zinc finger C3H1-type profile
PDOC51896  1  Zinc finger C4H2-type profile
PDOC52013  1  Zinc finger C6H2-type profile
PDOC51810  1  Zinc finger CCHC FOG-type profile
PDOC51811  1  Zinc finger CCHC HIVEP-type profile
PDOC51801  1  Zinc finger CCHC NOA-type profile
PDOC50158  1  Zinc finger CCHC-type profile
PDOC51802  1  Zinc finger CCHHC-type profile
PDOC51800  1  Zinc finger CHHC U11-48K-type profile
PDOC51266  2  Zinc finger CHY-type and CTCHY-type profiles
PDOC51050  1  Zinc finger CW-type profile
PDOC51058  1  Zinc finger CXXC-type profile
PDOC51265  1  Zinc finger Dbf4-type profile
PDOC51501  1  Zinc finger DNL-type profile
PDOC50884  2  Zinc finger Dof-type signature and profile
PDOC51024  1  Zinc finger FCS-type profile
PDOC51795  1  Zinc finger FLZ-type profile
PDOC50178  1  Zinc finger FYVE/FYVE-related type profile
PDOC51999  1  Zinc finger GRF-type profile
PDOC51083  1  Zinc finger HIT-type profile
PDOC50876  1  Zinc finger integrase-type profile
PDOC51341  1  Zinc finger large T-antigen (T-ag) D1-type profile
PDOC50171  1  Zinc finger matrin-type profile
PDOC50865  2  Zinc finger MYND-type signature and profile
PDOC51522  1  Zinc finger nanos-type profile
PDOC50016  2  Zinc finger PHD-type signature and profile
PDOC00379  2  Zinc finger phorbol-ester/DAG-type signature and profile
PDOC00360  2  Zinc finger poly(ADP-ribose) polymerase (PARP)-type signature and profile
PDOC51765  1  Zinc finger RAG1-type profile
PDOC50199  2  Zinc finger RanBP2-type signature and profile
PDOC52036  2  Zinc finger reverse gyrase (RG) N-terminal- and C-terminal-type profiles
PDOC51292  1  Zinc finger RING-CH-type profile
PDOC00449  2  Zinc finger RING-type signature and profile
PDOC51479  1  Zinc finger RTR1-type profile
PDOC51981  1  Zinc finger RZ-type profile
PDOC51141  1  Zinc finger SBP-type profile
PDOC51081  1  Zinc finger SIAH-type profile
PDOC51044  1  Zinc finger SP-RING-type profile
PDOC50966  1  Zinc finger SWIM-type profile
PDOC50134  1  Zinc finger TAZ-type profile
PDOC51134  1  Zinc finger TFIIB-type profile
PDOC00383  2  Zinc finger TFIIS-type signature and profile
PDOC50950  1  Zinc finger THAP-type profile
PDOC50145  1  Zinc finger TRAF-type profile
PDOC50271  1  Zinc finger UBP-type profile
PDOC51157  1  Zinc finger UBR-type profile
PDOC51905  4  Zinc finger UBZ1-, UBZ2-, UBZ3-, and UBZ4-type profiles
PDOC52058  1  Zinc finger UVSSA-type profile
PDOC51872  1  Zinc finger ZBR-type profile
PDOC50135  2  Zinc finger ZZ-type signature and profile
PDOC00058  2  Zinc-containing alcohol dehydrogenases signatures
PDOC51523  1  Zinc-finger ZF-HD dimerization-type profile
PDOC00378  2  Zn(2)-C6 fungal-type DNA-binding domain signature and profile
PDOC00577  2  ZP domain signature and profile
PDOC51145  1  ZU5 domain profile
