##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
20	67500	.	TTGGTAT	TTGGTATCTAGTGGTAT	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	69506	.	GACACACACACACACACACACACACACACA	GACACACACACACACACACACACACACACACACA	18.5	.	.	GT:PL:GQ	0/1:255,199,233:37
20	70484	.	CTCTTTCT	CTCT	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	72104	.	TAAAA	TAAA	163	.	.	GT:PL:GQ	0/1:201,0,200:99
20	106703	.	CTTTTTTTTTTTTTTT	CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTT	19.3	.	.	GT:PL:GQ	1/1:79,30,20,61,0,53,84,19,52,71:17
20	117309	.	GCAGGATTTCATCAGG	GCAGGATTTCATCAGGATTTCATCAGG	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	119645	.	GTT	GTTT	214	.	.	GT:PL:GQ	1/1:255,162,0:99
20	120122	.	AA	AAGA	214	.	.	GT:PL:GQ	1/1:255,247,0:99
20	120754	.	T	TAATC	215	.	.	GT:PL:GQ	1/1:255,9,0:16
20	121497	.	TCTC	T	78.5	.	.	GT:PL:GQ	0/1:116,0,255:99
20	122806	.	TTATATATATATAT	TTATATATATATATAT	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	123651	.	GTTTTTTTT	GTTTTTTTTT	9.93	.	.	GT:PL:GQ	0/1:47,0,44:45
20	126155	.	GCAAACAAA	GCAAA	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	126310	.	ACCCCC	ACCC	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	131505	.	CTCTT	CT	214	.	.	GT:PL:GQ	1/1:255,238,0:99
20	131948	.	CCACACACACACACACA	CCACACACACACACACACA	214	.	.	GT:PL:GQ	1/1:255,123,0:99
20	132304	.	TAAAAAAAAAAA	TAAAAAAAAAA,TAAAAAAAAA	44.5	.	.	GT:PL:GQ	1/1:85,119,0,85,116,82:99
20	134428	.	CAAAAAAAAAAAAAAAAAAAAAA	CAAAAAAAAAAAAA,CAAAAAAAAAAAAAA	178	.	.	GT:PL:GQ	1/1:255,114,36,255,0,248:99
20	137518	.	GTATATATATATATATATAT	GTATATATATATATATAT	54.5	.	.	GT:PL:GQ	1/1:255,255,160:99
20	138178	.	GCC	GC	214	.	.	GT:PL:GQ	1/1:255,214,0:99
20	138563	.	AATATATATAT	AATATATAT	214	.	.	GT:PL:GQ	1/1:255,63,0:99
20	139915	.	TAAAAAAAAAAA	TAAAAAAAAAAAAA,TAAAAAAAAAAAAAA	133	.	.	GT:PL:GQ	1/1:174,141,0,145,59,133:99
20	140396	.	TTTGTTGTTGTTGTTGTTGTTG	TTTGTTGTTGTTGTTGTTG	214	.	.	GT:PL:GQ	1/1:255,208,0:99
20	144832	.	CTT	CTTT	214	.	.	GT:PL:GQ	1/1:255,96,0:99
20	144884	.	CCTTCTT	CCTT	214	.	.	GT:PL:GQ	1/1:255,114,0:99
20	145257	.	G	GC	214	.	.	GT:PL:GQ	1/1:255,172,0:99
20	145715	.	AACACACACACACACACACACACACACACACACACACACACA	AACACACACACACACACACACACACACACACACACACACA	115	.	.	GT:PL:GQ	0/1:153,0,255:99
20	153298	.	TT	TTCT	214	.	.	GT:PL:GQ	1/1:255,187,0:99
20	160111	.	ATTTTTTTTTT	ATTTTTTTTTTT	32.5	.	.	GT:PL:GQ	1/1:73,151,0:99
20	163607	.	A	AAT	214	.	.	GT:PL:GQ	1/1:255,223,0:99
20	163743	.	CACACA	CACACATACACA	217	.	.	GT:PL:GQ	0/1:255,0,186:99
20	164279	.	GAAAA	GAAAACAAAA	217	.	.	GT:PL:GQ	0/1:255,0,184:99
20	171316	.	CTTTTTTTTTTTTTTTTT	CTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTT	17.3	.	.	GT:PL:GQ	1/1:87,40,30,63,0,49,94,36,57,86:17
20	172385	.	TA	T	11.8	.	.	GT:PL:GQ	0/1:49,0,206:51
20	176386	.	CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	160	.	.	GT:PL:GQ	1/1:255,151,54:99
20	179735	.	TTAAAATAAAA	TTAAAA	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	198395	.	GTATATATATATATATATA	GTATATATATATATATATATA	200	.	.	GT:PL:GQ	0/1:238,0,243:99
20	212674	.	AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA	AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA	142	.	.	GT:PL:GQ	0/1:255,77,79:5
20	218255	.	A	AG	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	220716	.	CAAAAAAAAAAAAAAAA	CAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAA	15.1	.	.	GT:PL:GQ	1/1:79,29,27,56,0,50,72,18,41,70:5
20	222539	.	C	CA	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	224745	.	GAAAAAAAAAA	GAAAAAAAAA	5.09	.	.	GT:PL:GQ	0/1:41,0,22:28
20	226084	.	GTATATATATATATATATATATATATATATA	GTATATATATATATATATATATA	217	.	.	GT:PL:GQ	0/1:255,0,172:99
20	229730	.	CAAAAAAAAAAAAA	CAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAA	33.7	.	.	GT:PL:GQ	0/1:71,0,10,76,19,54:13
20	230058	.	CATAAA	CAAA	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	232634	.	TACACACACACACACACACACACACACACACACACACACA	TACACACACACACACACACACACACACACACACACACACACACACA	181	.	.	GT:PL:GQ	0/1:219,0,234:99
20	236459	.	GATATATATATATATATATATATATATAT	GATATATATATATATATATATATATATATAT	108	.	.	GT:PL:GQ	0/1:146,0,143:99
20	237649	.	CAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA	CAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	237816	.	ATTTT	ATTTTT	96.5	.	.	GT:PL:GQ	0/1:134,0,206:99
20	238435	.	CTGGTCTTGG	CTGG	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	243223	.	CT	CTT	217	.	.	GT:PL:GQ	0/1:255,0,255:99
20	244120	.	GGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTG	GGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTG	47.5	.	.	GT:PL:GQ	0/1:85,0,255:88
20	246483	.	TTAAATAAATAAATAAATAAAT	TTAAATAAATAAATAAATAAATAAAT	217	.	.	GT:PL:GQ	0/1:255,0,255:99
