##fileformat=VCFv4.1
##samtoolsVersion=0.1.18 (r982:295)
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Root-mean-square mapping quality of covering reads">
##INFO=<ID=FQ,Number=1,Type=Float,Description="Phred probability of all samples being the same">
##INFO=<ID=AF1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele frequency (assuming HWE)">
##INFO=<ID=AC1,Number=1,Type=Float,Description="Max-likelihood estimate of the first ALT allele count (no HWE assumption)">
##INFO=<ID=G3,Number=3,Type=Float,Description="ML estimate of genotype frequencies">
##INFO=<ID=HWE,Number=1,Type=Float,Description="Chi^2 based HWE test P-value based on G3">
##INFO=<ID=CLR,Number=1,Type=Integer,Description="Log ratio of genotype likelihoods with and without the constraint">
##INFO=<ID=UGT,Number=1,Type=String,Description="The most probable unconstrained genotype configuration in the trio">
##INFO=<ID=CGT,Number=1,Type=String,Description="The most probable constrained genotype configuration in the trio">
##INFO=<ID=PV4,Number=4,Type=Float,Description="P-values for strand bias, baseQ bias, mapQ bias and tail distance bias">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=PC2,Number=2,Type=Integer,Description="Phred probability of the nonRef allele frequency in group1 samples being larger (,smaller) than in group2.">
##INFO=<ID=PCHI2,Number=1,Type=Float,Description="Posterior weighted chi^2 P-value for testing the association between group1 and group2 samples.">
##INFO=<ID=QCHI2,Number=1,Type=Integer,Description="Phred scaled PCHI2.">
##INFO=<ID=PR,Number=1,Type=Integer,Description="# permutations yielding a smaller PCHI2.">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GL,Number=3,Type=Float,Description="Likelihoods for RR,RA,AA genotypes (R=ref,A=alt)">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="# high-quality bases">
##FORMAT=<ID=SP,Number=1,Type=Integer,Description="Phred-scaled strand bias P-value">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	HG00171	HG00174	NA18486	NA18489
20	5902853	.	C	A	106	.	DP=71;VDB=0.0435;AF1=0.25;G3=0.75,2.827e-12,0.25;HWE=0.0339;AC1=2;DP4=43,3,23,0;MQ=59;FQ=107;PV4=0.55,2.8e-13,0.24,1	GT:PL:GQ	1/1:153,69,0:61	0/0:0,60,199:62	0/0:0,33,186:35	0/0:0,45,255:47
20	5902904	.	G	A	56	.	DP=123;VDB=0.0130;AF1=0.125;AC1=1;DP4=110,3,9,0;MQ=59;FQ=56.6;PV4=1,6.5e-12,0.29,1	GT:PL:GQ	0/0:0,105,215:99	0/0:0,123,220:99	0/1:92,0,192:87	0/0:0,57,255:62
20	5902924	.	T	G	12.4	.	DP=130;VDB=0.0310;AF1=0.2283;AC1=2;DP4=26,3,5,0;MQ=59;FQ=13.4;PV4=1,0.013,1,1	GT:PL:GQ	0/0:0,27,119:30	0/0:0,30,144:33	0/1:43,0,91:40	0/1:9,0,75:7
20	5905472	.	G	T	119	.	DP=64;VDB=0.0394;AF1=0.3749;AC1=3;DP4=33,1,23,0;MQ=60;FQ=121;PV4=1,5.4e-10,0.11,1	GT:PL:GQ	1/1:149,66,0:61	0/0:0,72,198:71	0/0:0,21,155:20	0/1:19,0,84:20
20	5905779	.	C	A	999	.	DP=194;VDB=0.0448;AF1=0.625;AC1=5;DP4=1,68,2,113;MQ=60;FQ=999;PV4=1,1.7e-34,0.14,0.02	GT:PL:GQ	0/0:0,190,255:99	1/1:201,190,0:99	1/1:168,135,0:99	0/1:130,0,120:99
20	5908537	.	T	C	65.9	.	DP=15;VDB=0.0431;AF1=0.3725;AC1=3;DP4=4,2,1,3;MQ=60;FQ=67.8;PV4=0.52,1,1,1	GT:PL:GQ	0/0:0,3,26:5	0/0:0,15,130:15	0/0:0,0,0:3	1/1:107,12,0:7
20	5908560	.	C	T	14.2	.	DP=13;VDB=0.0190;AF1=0.2887;AC1=2;DP4=7,3,1,2;MQ=60;FQ=15.7;PV4=0.51,0.02,1,1	GT:PL:GQ	0/1:20,0,14:17	0/0:0,15,145:16	0/0:0,3,37:6	0/1:34,0,87:33
20	5908691	.	A	G	12.3	.	DP=42;VDB=0.0051;AF1=0.1253;AC1=1;DP4=33,5,1,1;MQ=59;FQ=12.8;PV4=0.28,1,1,0.032	GT:PL:GQ	0/0:0,21,155:27	0/1:48,0,84:42	0/0:0,48,179:54	0/0:0,33,255:39
20	5909236	.	T	C	318	.	DP=120;VDB=0.0383;AF1=0.25;AC1=2;DP4=60,37,13,7;MQ=59;FQ=319;PV4=1,1,0.41,1	GT:PL:GQ	0/1:163,0,114:99	0/0:0,96,255:98	0/0:0,135,255:99	0/1:196,0,208:99
20	5909380	.	C	A	999	.	DP=159;VDB=0.0438;AF1=0.25;AC1=2;DP4=73,46,17,15;MQ=60;FQ=999;PV4=0.42,1.2e-08,1,0.17	GT:PL:GQ	0/1:213,0,252:99	0/0:0,126,255:99	0/0:0,138,255:99	0/1:198,0,199:99
20	5910024	.	C	A	268	.	DP=65;VDB=0.0379;AF1=0.4039;AC1=3;DP4=0,40,2,22;MQ=58;FQ=270;PV4=0.14,0.00021,1,1	GT:PL:GQ	0/1:137,0,158:99	0/0:0,72,212:71	0/0:0,6,65:6	1/1:179,21,0:16
20	5910196	.	C	T	83.2	.	DP=11;VDB=0.0427;AF1=0.3384;AC1=3;DP4=0,6,2,2;MQ=58;FQ=85;PV4=0.13,0.16,1,0.2	GT:PL:GQ	0/0:0,9,87:10	0/0:0,9,95:10	0/0:0,0,0:3	1/1:125,12,0:6
20	5910207	.	G	A	40.7	.	DP=11;VDB=0.0298;AF1=0.1852;AC1=1;DP4=1,6,1,2;MQ=58;FQ=41.6;PV4=1,0.05,1,0.43	GT:PL:GQ	0/0:0,9,84:13	0/0:0,9,97:13	0/0:0,0,0:5	0/1:75,0,16:26
20	5913221	.	C	T	53.3	.	DP=14;VDB=0.0440;AF1=0.2128;AC1=1;DP4=6,2,2,2;MQ=60;FQ=54.4;PV4=0.55,0.23,1,1	GT:PL:GQ	0/0:0,9,85:12	0/1:87,0,89:84	0/0:0,0,0:4	0/0:0,3,37:7
20	5920873	.	A	G	22.7	.	DP=12;VDB=0.0106;AF1=0.1862;AC1=1;DP4=3,7,2,0;MQ=60;FQ=23.6;PV4=0.15,1,1,1	GT:PL:GQ	0/1:57,0,69:53	0/0:0,15,125:19	0/0:0,0,0:5	0/0:0,6,60:10
20	5921467	.	C	A	214	.	DP=65;VDB=0.0311;AF1=0.4726;AC1=4;DP4=42,0,19,0;MQ=60;FQ=217;PV4=1,1.3e-07,1,0.047	GT:PL:GQ	0/1:120,0,161:99	0/0:0,66,201:64	1/1:78,9,0:6	0/1:63,0,98:65
20	5921478	.	ATTTTTTTTT	ATTTTTTTT	28.7	.	INDEL;DP=72;VDB=0.0301;AF1=0.6206;AC1=5;DP4=37,0,26,0;MQ=60;FQ=-4.16;PV4=1,5.1e-15,0.12,0.26	GT:PL:GQ	0/1:12,0,13:12	0/0:0,60,39:35	1/1:36,15,0:14	1/1:39,18,0:17
20	5922243	.	T	A	6.22	.	DP=54;VDB=0.0197;AF1=0.1261;AC1=1;DP4=22,30,0,2;MQ=60;FQ=6.67;PV4=0.51,1,1,1	GT:PL:GQ	0/0:0,75,255:82	0/0:0,51,255:58	0/0:0,15,136:22	0/1:41,0,110:34
20	5922358	.	G	A	999	.	DP=76;VDB=0.0388;AF1=0.6247;AC1=5;DP4=33,4,28,1;MQ=59;FQ=999;PV4=0.37,0.16,0.34,1	GT:PL:GQ	0/1:115,0,186:99	0/0:0,81,255:76	1/1:169,30,0:29	1/1:196,30,0:29
20	5923722	.	G	T	96.9	.	DP=18;VDB=0.0185;AF1=0.4303;AC1=3;DP4=3,8,0,6;MQ=59;FQ=99.3;PV4=0.51,0.44,0.092,1	GT:PL:GQ	0/1:49,0,25:29	0/0:0,21,158:19	0/1:33,3,0:4	0/1:59,0,79:61
20	5930573	.	AGGG	AGGGG	122	.	INDEL;DP=13;VDB=0.0358;AF1=0.3715;AC1=3;DP4=5,1,5,2;MQ=58;FQ=101;PV4=1,1,1,1	GT:PL:GQ	0/1:69,0,43:49	0/0:0,6,56:7	0/1:0,0,0:3	0/1:98,0,45:51
20	5935449	.	C	T	999	.	DP=120;VDB=0.0402;AF1=0.5;AC1=4;DP4=9,63,2,42;MQ=60;FQ=999;PV4=0.2,1.7e-12,1,1	GT:PL:GQ	0/1:153,0,252:99	0/0:0,123,255:99	1/1:159,51,0:48	0/1:104,0,77:80
20	5938000	.	A	G	118	.	DP=140;VDB=0.0297;AF1=0.125;AC1=1;DP4=3,123,0,11;MQ=60;FQ=119;PV4=1,1,1,1	GT:PL:GQ	0/0:0,166,202:99	0/0:0,148,220:99	0/1:154,0,117:99	0/0:0,36,161:41
20	5939493	.	C	T	20	.	DP=112;VDB=0.0245;AF1=0.125;AC1=1;DP4=1,108,0,2;MQ=60;FQ=20.6;PV4=1,0.29,1,1	GT:PL:GQ	0/0:0,166,230:99	0/0:0,126,255:99	0/0:0,30,195:35	0/1:56,0,44:49
20	5939649	.	A	C	36.1	.	DP=13;VDB=0.0250;AF1=0.2017;AC1=1;DP4=0,10,0,3;MQ=60;FQ=37.1;PV4=1,1,1,1	GT:PL:GQ	0/1:70,0,60:65	0/0:0,18,114:21	0/0:0,3,33:7	0/0:0,0,0:5
20	5943649	.	A	G	132	.	DP=27;VDB=0.0338;AF1=0.4352;AC1=4;DP4=13,2,8,3;MQ=60;FQ=135;PV4=0.62,0.00084,1,1	GT:PL:GQ	0/1:113,0,113:99	0/0:0,24,159:23	0/1:0,0,0:3	1/1:61,6,0:4
20	5943693	.	C	A	999	.	DP=59;VDB=0.0265;AF1=0.5708;AC1=5;DP4=33,1,14,7;MQ=59;FQ=999;PV4=0.0034,0.0023,0.034,1	GT:PL:GQ	0/1:243,0,148:99	0/0:0,66,241:62	1/1:63,6,0:5	1/1:99,9,0:8
20	5944255	.	A	G	44.7	.	DP=10;VDB=0.0135;AF1=0.4518;AC1=4;DP4=0,6,2,1;MQ=55;FQ=47.3;PV4=0.083,1,1,1	GT:PL:GQ	0/1:21,0,43:23	0/0:0,12,100:11	0/1:0,0,0:3	1/1:65,6,0:4
20	5947608	.	G	A	79.6	.	DP=14;VDB=0.0166;AF1=0.1799;AC1=1;DP4=6,3,2,2;MQ=60;FQ=80.4;PV4=1,1,1,0.13	GT:PL:GQ	0/0:0,9,62:13	0/0:0,12,99:16	0/0:0,0,0:5	0/1:114,0,50:60
20	5947702	.	G	T	9.09	.	DP=13;VDB=0.0173;AF1=0.1775;AC1=1;DP4=6,5,1,1;MQ=60;FQ=9.85;PV4=1,0.071,1,0.46	GT:PL:GQ	0/0:0,9,97:14	0/0:0,15,150:20	0/0:0,0,0:6	0/1:43,0,92:38
20	5953619	.	A	G	172	.	DP=175;VDB=0.0520;AF1=0.125;AC1=1;DP4=153,0,14,1;MQ=60;FQ=173;PV4=0.089,1,0.068,0.36	GT:PL:GQ	0/0:0,163,163:99	0/0:0,163,164:99	0/0:0,108,162:99	0/1:208,0,109:99
20	5958960	.	T	C	135	.	DP=13;VDB=0.0417;AF1=0.4084;AC1=3;DP4=0,7,1,5;MQ=57;FQ=84.5;PV4=0.46,1,0.38,0.021	GT:PL:GQ	0/1:134,0,12:17	0/0:0,18,110:17	0/1:0,0,0:3	0/1:41,3,0:4
20	5960691	.	T	C	85.2	.	DP=10;VDB=0.0409;AF1=0.5156;AC1=4;DP4=3,2,1,4;MQ=60;FQ=88.3;PV4=0.52,0.28,1,1	GT:PL:GQ	0/1:16,0,58:19	0/0:0,9,89:7	0/1:0,0,0:3	1/1:112,12,0:9
20	5960784	.	G	A	19.2	.	DP=11;VDB=0.0180;AF1=0.1622;AC1=1;DP4=2,6,2,0;MQ=60;FQ=19.9;PV4=0.13,1,1,1	GT:PL:GQ	0/0:0,3,33:8	0/0:0,9,74:14	0/0:0,6,73:11	0/1:54,0,50:49
20	5965731	.	A	T	999	.	DP=142;VDB=0.0448;AF1=0.375;AC1=3;DP4=0,85,0,47;MQ=60;FQ=999;PV4=1,1,1,1	GT:PL:GQ	0/1:133,0,115:99	0/0:0,102,156:99	0/1:126,0,131:99	0/1:131,0,134:99
20	5967000	.	ACTTTTCTTTT	ACTTTT	46.6	.	INDEL;DP=48;VDB=0.0190;AF1=0.1295;AC1=1;DP4=2,35,1,3;MQ=58;FQ=47.2;PV4=0.27,0.11,5.9e-13,1	GT:PL:GQ	0/0:0,39,255:44	0/0:0,60,255:65	0/0:0,9,151:14	0/1:90,0,45:56
20	5967744	.	T	A	999	.	DP=70;VDB=0.0420;AF1=0.6243;AC1=5;DP4=36,0,30,0;MQ=58;FQ=999;PV4=1,1,0.00096,0.37	GT:PL:GQ	0/1:115,0,111:99	0/0:0,72,153:67	1/1:140,24,0:23	1/1:161,30,0:29
20	5974701	.	TTTT	TTTTGTTT	999	.	INDEL;DP=36;VDB=0.0251;AF1=0.25;AC1=2;DP4=22,1,13,0;MQ=57;FQ=999;PV4=1,1,0.0004,1	GT:PL:GQ	0/1:245,0,235:99	0/0:0,48,255:50	0/0:0,0,0:4	0/0:0,0,0:4
20	5975120	.	GACAGACACACACA	GACA	60	.	INDEL;DP=81;VDB=0.0411;AF1=0.26;AC1=2;DP4=2,43,0,7;MQ=58;FQ=61.3;PV4=1,1,0.00048,0.41	GT:PL:GQ	0/1:93,0,160:91	0/0:0,60,233:62	0/1:15,0,118:13	0/0:0,7,172:9
20	5988095	.	A	G	999	.	DP=58;VDB=0.0503;AF1=1;AC1=8;DP4=0,0,3,48;MQ=60;FQ=-31.2	GT:PL:GQ	1/1:0,0,0:7	1/1:0,0,0:7	1/1:255,102,0:99	1/1:232,51,0:58
20	5990725	.	TT	TTGT	95.1	.	INDEL;DP=159;VDB=0.0422;AF1=0.8739;AC1=7;DP4=1,19,2,48;MQ=59;FQ=-11.3;PV4=1,1,1,0.18	GT:PL:GQ	0/1:17,0,32:24	1/1:33,36,0:41	1/1:48,39,0:44	1/1:49,15,0:20
20	5994209	.	G	A	19.4	.	DP=15;VDB=0.0235;AF1=0.1721;AC1=1;DP4=4,7,1,1;MQ=60;FQ=20.2;PV4=1,1,1,1	GT:PL:GQ	0/0:0,12,109:16	0/0:0,18,153:22	0/0:0,0,0:5	0/1:54,0,22:32
20	6011756	.	A	G	50.1	.	DP=150;VDB=0.0223;AF1=0.1273;AC1=1;DP4=142,4,2,1;MQ=60;FQ=50.7;PV4=0.098,1,1,1	GT:PL:GQ	0/0:0,178,186:99	0/0:0,232,212:99	0/0:0,12,91:17	0/1:86,0,121:81
20	6012323	.	T	C	27.6	.	DP=34;VDB=0.0239;AF1=0.1429;AC1=1;DP4=10,21,0,2;MQ=60;FQ=28.2;PV4=1,1,1,1	GT:PL:GQ	0/0:0,42,249:47	0/0:0,42,230:47	0/0:0,3,29:9	0/1:63,0,47:55
20	6014954	.	G	A	999	.	DP=75;VDB=0.0438;AF1=0.875;AC1=7;DP4=11,0,53,3;MQ=59;FQ=127;PV4=1,2.2e-11,1,1	GT:PL:GQ	0/1:69,0,162:80	1/1:206,81,0:86	1/1:154,42,0:47	1/1:179,30,0:35
20	6015419	.	ATGTGT	ATGT	112	.	INDEL;DP=36;VDB=0.0434;AF1=0.1669;AC1=1;DP4=0,29,1,3;MQ=59;FQ=112;PV4=0.12,0.025,1,0.045	GT:PL:GQ	0/0:0,54,255:58	0/0:0,24,255:28	0/0:0,0,0:5	0/1:154,0,111:99
20	6017539	.	C	T	66.6	.	DP=71;VDB=0.0267;AF1=0.2499;AC1=2;DP4=63,0,6,0;MQ=60;FQ=67.8;PV4=1,0.00038,1,0.46	GT:PL:GQ	0/0:0,87,207:89	0/0:0,69,204:71	0/1:74,0,107:72	0/1:34,0,125:32
20	6021948	.	C	T	999	.	DP=106;VDB=0.0392;AF1=0.1263;AC1=1;DP4=56,9,23,5;MQ=59;FQ=999;PV4=0.75,2.9e-05,0.19,1	GT:PL:GQ	0/0:0,15,124:20	0/0:0,24,161:29	0/1:206,0,255:99	0/0:0,69,255:74
20	6031958	.	A	G	76.5	.	DP=17;VDB=0.0504;AF1=0.1757;AC1=1;DP4=1,11,2,3;MQ=60;FQ=77.3;PV4=0.19,0.31,1,0.27	GT:PL:GQ	0/0:0,21,149:25	0/0:0,9,77:13	0/0:0,0,0:5	0/1:111,0,38:48
20	6033025	.	T	C	167	.	DP=14;VDB=0.0389;AF1=1;AC1=8;DP4=0,1,9,2;MQ=60;FQ=-29.6;PV4=0.25,1,1,1	GT:PL:GQ	1/1:25,3,0:8	1/1:0,0,0:6	1/1:126,1,0:7	1/1:51,6,0:11
20	6033202	.	C	G	5.71	.	DP=39;VDB=0.0112;AF1=0.3182;AC1=2;DP4=1,20,4,0;MQ=59;FQ=6.92;PV4=0.0004,0.14,1,1	GT:PL:GQ	0/1:37,3,0:7	0/0:0,3,27:7	0/0:0,10,162:13	0/1:7,0,68:6
20	6033527	.	T	C	65.8	.	DP=13;VDB=0.0157;AF1=0.3532;AC1=3;DP4=2,6,1,3;MQ=58;FQ=67.7;PV4=1,1,1,1	GT:PL:GQ	0/1:0,0,0:3	0/0:0,9,72:9	0/1:76,0,37:43	0/1:28,0,87:28
20	6033538	.	C	T	69.8	.	DP=15;VDB=0.0115;AF1=0.3385;AC1=3;DP4=2,6,1,4;MQ=60;FQ=71.6;PV4=1,0.16,1,1	GT:PL:GQ	0/0:0,0,0:3	0/0:0,12,103:13	0/1:93,0,28:34	0/1:15,0,91:15
20	6052252	.	CTT	CT	260	.	INDEL;DP=11;VDB=0.0258;AF1=1;AC1=8;DP4=0,0,5,5;MQ=60;FQ=-40.8	GT:PL:GQ	1/1:63,6,0:15	1/1:119,12,0:21	1/1:0,0,0:9	1/1:123,12,0:21
20	6056952	.	T	G	5.21	.	DP=14;VDB=0.0414;AF1=0.492;AC1=4;DP4=1,4,2,0;MQ=57;FQ=7.4;PV4=0.14,0.028,1,1	GT:PL:GQ	0/0:0,0,0:3	0/0:0,3,32:5	0/1:29,3,0:5	0/1:12,0,95:12
20	6057627	.	G	A	72.1	.	DP=62;VDB=0.0155;AF1=0.1267;AC1=1;DP4=31,2,9,0;MQ=58;FQ=72.6;PV4=1,1,0.37,0.45	GT:PL:GQ	0/1:108,0,66:77	0/0:0,48,183:53	0/0:0,18,108:23	0/0:0,15,90:20
20	6060396	.	G	A	50	.	DP=104;VDB=0.0395;AF1=0.1266;AC1=1;DP4=2,97,0,4;MQ=60;FQ=50.6;PV4=1,0.12,1,0.25	GT:PL:GQ	0/0:0,141,245:99	0/0:0,138,251:99	0/0:0,15,122:20	0/1:86,0,13:24
20	6062330	.	T	G	56.6	.	DP=12;VDB=0.0374;AF1=0.1809;AC1=1;DP4=1,7,0,4;MQ=60;FQ=57.5;PV4=1,0.48,1,1	GT:PL:GQ	0/1:91,0,13:23	0/0:0,12,101:16	0/0:0,0,0:5	0/0:0,9,100:13
20	6064420	.	T	A	48.4	.	DP=21;VDB=0.0138;AF1=0.269;AC1=2;DP4=10,3,5,0;MQ=58;FQ=49.7;PV4=0.52,1,1,0.25	GT:PL:GQ	0/0:3,24,139:22	0/0:0,6,56:8	0/1:21,0,62:20	0/1:68,0,24:31
20	6064554	.	A	G	210	.	DP=67;VDB=0.0246;AF1=0.25;AC1=2;DP4=48,4,10,1;MQ=60;FQ=211;PV4=1,1,0.014,1	GT:PL:GQ	0/0:0,54,208:56	0/0:0,66,197:68	0/1:117,0,90:98	0/1:134,0,120:99
20	6064606	.	C	T	120	.	DP=164;VDB=0.0345;AF1=0.125;AC1=1;DP4=127,9,17,2;MQ=60;FQ=121;PV4=0.63,8.3e-09,1,0.27	GT:PL:GQ	0/0:0,93,255:98	0/0:0,132,255:99	0/1:156,0,214:99	0/0:0,87,255:92
20	6064839	.	T	C	999	.	DP=125;VDB=0.0386;AF1=0.625;AC1=5;DP4=8,43,8,57;MQ=60;FQ=999;PV4=0.6,1,0.19,1	GT:PL:GQ	0/1:228,0,121:99	0/1:227,0,216:99	1/1:255,48,0:47	0/1:73,0,235:78
20	6064841	.	C	T	21	.	DP=121;VDB=0.0480;AF1=0.125;AC1=1;DP4=15,100,1,3;MQ=60;FQ=21.6;PV4=0.44,0.0085,1,0.071	GT:PL:GQ	0/0:0,99,255:99	0/0:0,154,255:99	0/0:0,51,255:56	0/1:57,0,255:52
20	6066072	.	G	A	18.1	.	DP=76;VDB=0.0073;AF1=0.125;AC1=1;DP4=1,66,0,4;MQ=59;FQ=18.6;PV4=1,0.003,0.0038,1	GT:PL:GQ	0/0:0,78,201:84	0/0:0,66,197:72	0/0:0,36,187:42	0/1:54,0,152:48
20	6068752	.	TAAA	TAAATCAAA	32.8	.	INDEL;DP=34;VDB=0.0295;AF1=0.3611;AC1=3;DP4=1,28,1,2;MQ=57;FQ=34.7;PV4=0.18,1,3.4e-10,1	GT:PL:GQ	0/0:0,33,255:33	0/0:0,54,255:54	0/1:29,3,0:5	1/1:58,6,0:3
20	6068863	.	T	C	33.7	.	DP=11;VDB=0.0156;AF1=0.3153;AC1=2;DP4=2,6,0,3;MQ=58;FQ=35.3;PV4=1,1,0.052,1	GT:PL:GQ	0/0:0,9,81:10	0/1:35,0,47:34	0/1:41,3,0:5	0/0:0,9,83:10
20	6070105	.	A	G	67.1	.	DP=13;VDB=0.0071;AF1=0.2847;AC1=2;DP4=0,8,2,1;MQ=60;FQ=68.5;PV4=0.055,1,1,1	GT:PL:GQ	0/0:0,12,86:14	0/0:0,12,86:14	0/0:0,0,0:4	1/1:108,9,0:4
20	6072540	.	G	C	13.1	.	DP=11;VDB=0.0170;AF1=0.1523;AC1=1;DP4=1,8,1,1;MQ=60;FQ=13.8;PV4=0.35,0.3,1,0.17	GT:PL:GQ	0/0:0,12,98:17	0/0:0,9,82:14	0/0:0,3,40:8	0/1:48,0,27:37
20	6075178	.	A	G	42.9	.	DP=11;VDB=0.0183;AF1=0.1558;AC1=1;DP4=6,2,3,0;MQ=60;FQ=43.7;PV4=1,1,1,1	GT:PL:GQ	0/1:78,0,19:29	0/0:0,9,74:14	0/0:0,3,31:8	0/0:0,9,91:14
20	6077365	.	C	A	999	.	DP=95;VDB=0.0234;AF1=0.25;AC1=2;DP4=69,2,20,2;MQ=59;FQ=999;PV4=0.24,1.9e-08,0.038,1	GT:PL:GQ	0/1:81,0,188:79	0/1:142,0,152:99	0/0:0,57,209:59	0/0:0,51,232:53
20	6077907	.	C	A	16.2	.	DP=41;VDB=0.0215;AF1=0.1593;AC1=1;DP4=14,22,0,2;MQ=60;FQ=16.9;PV4=0.52,0.13,1,0.2	GT:PL:GQ	0/0:0,36,255:41	0/0:0,39,255:44	0/1:57,6,0:6	0/0:0,33,215:38
20	6078463	.	T	TT	48.8	.	INDEL;DP=61;VDB=0.0430;AF1=0.2677;AC1=2;DP4=0,26,0,6;MQ=59;FQ=50.2;PV4=1,1,1,1	GT:PL:GQ	0/0:0,39,124:40	0/1:77,0,86:75	0/0:0,6,43:8	0/1:20,0,42:19
20	6087162	.	A	G	72	.	DP=20;VDB=0.0153;AF1=0.4001;AC1=3;DP4=12,0,4,2;MQ=60;FQ=74.2;PV4=0.098,0.084,1,0.11	GT:PL:GQ	0/1:36,0,114:37	0/1:73,0,60:65	0/1:0,0,0:3	0/0:0,3,32:4
20	6087272	.	G	C	177	.	DP=24;VDB=0.0388;AF1=0.5;G3=9.615e-07,1,9.598e-07;HWE=0.0415;AC1=4;DP4=1,13,1,9;MQ=60;FQ=180;PV4=1,0.35,1,0.36	GT:PL:GQ	0/1:101,0,108:99	0/1:84,0,159:87	0/1:0,0,0:3	0/1:31,0,32:31
20	6087960	.	C	T	999	.	DP=53;VDB=0.0353;AF1=0.5;G3=9.538e-07,1,9.537e-07;HWE=0.0414;AC1=4;DP4=23,9,10,7;MQ=58;FQ=999;PV4=0.52,0.00013,0.018,1	GT:PL:GQ	0/1:123,0,255:99	0/1:109,0,196:99	0/1:0,0,0:3	0/1:50,0,67:53
20	6088005	.	G	A	999	.	DP=47;VDB=0.0431;AF1=0.2929;AC1=2;DP4=14,8,15,10;MQ=57;FQ=999;PV4=1,1,0.057,1	GT:PL:GQ	0/1:208,0,172:99	0/1:171,0,81:88	0/0:0,3,33:5	0/0:0,12,110:13
20	6088071	.	C	T	48	.	DP=74;VDB=0.0057;AF1=0.1251;AC1=1;DP4=54,11,4,0;MQ=58;FQ=48.6;PV4=1,0.28,1,1	GT:PL:GQ	0/0:0,72,255:77	0/0:0,90,255:95	0/0:0,27,179:32	0/1:84,0,45:56
20	6089906	.	G	A	52.2	.	DP=12;VDB=0.0275;AF1=0.2893;AC1=2;DP4=6,2,2,1;MQ=60;FQ=53.6;PV4=1,1,1,1	GT:PL:GQ	0/0:0,9,96:11	0/0:0,15,125:17	0/0:0,0,0:4	1/1:93,9,0:4
20	6089913	.	G	A	38.9	.	DP=10;VDB=0.0275;AF1=0.1946;AC1=1;DP4=4,2,2,1;MQ=60;FQ=39.9;PV4=1,0.36,1,0.31	GT:PL:GQ	0/0:0,6,65:10	0/0:0,9,86:13	0/0:0,0,0:5	0/1:73,0,18:27
20	6090623	.	T	C	999	.	DP=20;VDB=0.0168;AF1=0.4002;AC1=3;DP4=8,0,9,0;MQ=60;FQ=115;PV4=1,1,1,1	GT:PL:GQ	0/1:91,0,35:40	0/1:110,0,82:87	0/1:0,0,0:3	0/0:0,3,33:4
20	6092800	.	A	G	110	.	DP=18;VDB=0.0394;AF1=0.3437;AC1=3;DP4=11,0,6,0;MQ=59;FQ=111;PV4=1,1,1,1	GT:PL:GQ	0/0:0,12,95:12	0/1:109,0,104:99	0/1:42,3,0:5	0/0:0,3,34:5
20	6093361	.	C	A	6.19	.	DP=115;VDB=0.0197;AF1=0.125;AC1=1;DP4=4,108,1,1;MQ=59;FQ=6.64;PV4=0.086,0.0051,1,1	GT:PL:GQ	0/0:0,138,255:99	0/0:0,154,255:99	0/0:0,27,187:34	0/1:41,0,132:34
20	6093498	.	G	A	165	.	DP=22;VDB=0.0225;AF1=0.4996;G3=1.005e-06,1,9.571e-07;HWE=0.0416;AC1=4;DP4=1,10,1,9;MQ=59;FQ=168;PV4=1,0.27,0.15,1	GT:PL:GQ	0/1:91,0,113:94	0/1:90,0,67:70	0/1:0,0,0:3	0/1:23,0,33:25
20	6096337	.	G	T	75	.	DP=82;VDB=0.0297;AF1=0.1253;AC1=1;DP4=68,1,7,0;MQ=59;FQ=75.6;PV4=1,0.032,1,1	GT:PL:GQ	0/0:0,78,206:83	0/0:0,90,239:95	0/1:111,0,125:99	0/0:0,21,161:26
20	6096695	.	C	T	999	.	DP=191;VDB=0.0435;AF1=0.5;G3=4.893e-26,1,3.488e-44;HWE=0.0185;AC1=4;DP4=7,85,6,79;MQ=59;FQ=999;PV4=1,5.2e-36,1,0.34	GT:PL:GQ	0/1:163,0,232:99	0/1:178,0,255:99	0/1:126,0,223:99	0/1:120,0,210:99
20	6100349	.	G	A	122	.	DP=96;VDB=0.0417;AF1=0.132;AC1=1;DP4=2,69,0,21;MQ=59;FQ=123;PV4=1,1,0.46,1	GT:PL:GQ	0/0:0,138,208:99	0/1:158,0,138:99	0/0:0,9,97:14	0/0:0,12,122:17
20	6100391	.	G	A	999	.	DP=62;VDB=0.0336;AF1=0.5;G3=9.538e-07,1,9.537e-07;HWE=0.0414;AC1=4;DP4=1,24,1,32;MQ=59;FQ=999;PV4=1,9.3e-07,1,0.26	GT:PL:GQ	0/1:137,0,131:99	0/1:132,0,146:99	0/1:0,0,0:3	0/1:48,0,94:51
20	6104048	.	C	G	45.8	.	DP=10;VDB=0.0268;AF1=0.1889;AC1=1;DP4=4,3,3,0;MQ=60;FQ=46.7;PV4=0.47,1,1,1	GT:PL:GQ	0/0:0,12,122:16	0/0:0,6,73:10	0/0:0,0,0:5	0/1:80,0,27:37
20	6108248	.	A	G	6.73	.	DP=15;VDB=0.0163;AF1=0.1831;AC1=1;DP4=9,4,1,1;MQ=59;FQ=7.43;PV4=1,0.00031,1,1	GT:PL:GQ	0/0:0,6,52:11	0/0:0,24,169:29	0/1:46,6,0:6	0/0:0,9,94:14
20	6108522	.	T	C	999	.	DP=29;VDB=0.0314;AF1=1;AC1=8;DP4=0,0,7,17;MQ=60;FQ=-31.2	GT:PL:GQ	1/1:179,30,0:37	1/1:212,42,0:49	1/1:0,0,0:7	1/1:0,0,0:7
20	6181578	.	T	C	999	.	DP=113;VDB=0.0389;AF1=0.625;AC1=5;DP4=38,1,66,2;MQ=60;FQ=999;PV4=1,1,0.23,1	GT:PL:GQ	0/1:188,0,157:99	0/1:156,0,120:99	0/1:180,0,122:99	1/1:242,60,0:59
20	6181863	.	T	C	999	.	DP=198;VDB=0.0517;AF1=0.25;AC1=2;DP4=70,92,10,11;MQ=59;FQ=999;PV4=0.82,1,1,0.22	GT:PL:GQ	0/0:0,184,255:99	0/0:0,220,255:99	0/1:255,0,231:99	0/1:81,0,146:79
20	6181948	.	G	A	999	.	DP=157;VDB=0.0450;AF1=1;AC1=8;DP4=0,0,36,110;MQ=59;FQ=-89.4	GT:PL:GQ	1/1:255,114,0:99	1/1:255,175,0:99	1/1:255,96,0:99	1/1:255,54,0:99
20	6181957	.	C	T	999	.	DP=162;VDB=0.0449;AF1=0.125;AC1=1;DP4=43,87,7,16;MQ=60;FQ=999;PV4=1,1e-06,1,1	GT:PL:GQ	0/0:0,138,255:99	0/1:216,0,255:99	0/0:0,105,255:99	0/0:0,48,255:53
20	6182482	.	T	C	85	.	DP=86;VDB=0.0165;AF1=0.125;AC1=1;DP4=26,52,0,5;MQ=59;FQ=85.6;PV4=0.32,1,1,1	GT:PL:GQ	0/0:0,114,255:99	0/0:0,81,255:86	0/1:121,0,64:75	0/0:0,30,216:35
20	6182577	.	G	A	999	.	DP=89;VDB=0.0411;AF1=0.2507;AC1=2;DP4=46,8,23,6;MQ=60;FQ=999;PV4=0.55,1,1,0.17	GT:PL:GQ	0/1:173,0,130:99	0/1:175,0,174:99	0/0:0,24,173:26	0/0:0,24,191:26
20	6182755	.	C	T	999	.	DP=116;VDB=0.0351;AF1=0.4995;AC1=4;DP4=10,61,7,33;MQ=59;FQ=999;PV4=0.78,1.1e-09,1,1	GT:PL:GQ	0/0:0,144,255:99	0/1:169,0,231:99	1/1:182,27,0:24	0/1:65,0,48:51
20	6194193	.	A	C	999	.	DP=50;VDB=0.0249;AF1=1;AC1=8;DP4=0,0,45,0;MQ=56;FQ=-41.1	GT:PL:GQ	1/1:193,66,0:83	1/1:187,45,0:62	1/1:70,6,0:23	1/1:144,18,0:35
20	6196040	.	G	C	309	.	DP=159;VDB=0.0470;AF1=0.25;AC1=2;DP4=1,85,0,57;MQ=53;FQ=310;PV4=1,1,4.3e-06,1	GT:PL:GQ	0/0:0,69,196:71	0/0:0,42,209:44	0/1:183,0,176:99	0/1:167,0,140:99
20	6213562	.	CTTCTTTTCTTTTCTTT	CTTCTTTTCTTTTCTTTTCTTT	27.7	.	INDEL;DP=10;VDB=0.0297;AF1=0.3335;AC1=3;DP4=2,3,0,2;MQ=57;FQ=29.5;PV4=1,1,0.059,1	GT:PL:GQ	0/0:0,3,60:6	0/0:0,0,0:3	0/0:0,0,0:3	0/1:67,0,173:66
20	6233645	.	A	G	48.1	.	DP=11;VDB=0.0153;AF1=0.3997;AC1=3;DP4=2,3,2,1;MQ=60;FQ=50.3;PV4=1,1,1,1	GT:PL:GQ	0/0:0,3,35:4	0/1:25,0,60:26	0/1:0,0,0:3	0/1:60,0,61:60
20	6236047	.	G	C	70.3	.	DP=12;VDB=0.0055;AF1=0.4997;AC1=4;DP4=1,5,4,0;MQ=60;FQ=73.3;PV4=0.048,1,1,1	GT:PL:GQ	0/1:0,0,0:3	0/1:26,0,51:28	0/1:0,0,0:3	0/1:79,0,114:81
20	6247628	.	T	G	77.6	.	DP=11;VDB=0.0426;AF1=0.5282;AC1=4;DP4=2,4,2,2;MQ=60;FQ=80.8;PV4=1,1,1,0.049	GT:PL:GQ	0/1:18,0,98:21	0/0:0,6,65:5	0/1:0,0,0:3	1/1:101,9,0:7
20	6247656	.	T	G	71.4	.	DP=12;VDB=0.0436;AF1=0.4895;AC1=4;DP4=3,4,2,2;MQ=60;FQ=74.2;PV4=1,1,1,1	GT:PL:GQ	0/1:10,0,90:12	0/0:0,9,85:8	0/1:0,0,0:3	1/1:103,9,0:6
20	6272497	.	C	T	75.3	.	DP=10;VDB=0.0239;AF1=0.6459;AC1=5;DP4=0,5,3,2;MQ=60;FQ=79.7;PV4=0.17,0.0077,1,1	GT:PL:GQ	0/1:24,0,64:29	0/1:21,0,80:26	1/1:71,9,0:9	0/1:0,0,0:3
20	6278625	.	T	C	24.1	.	DP=10;VDB=0.0168;AF1=0.2049;AC1=1;DP4=5,3,1,1;MQ=58;FQ=25.2;PV4=1,1,1,1	GT:PL:GQ	0/0:0,6,60:10	0/1:58,0,84:55	0/0:0,0,0:5	0/0:0,6,62:10
20	6403132	.	T	G	171	.	DP=10;VDB=0.0451;AF1=0.8008;AC1=7;DP4=1,0,5,2;MQ=60;FQ=-13.1;PV4=1,1,1,1	GT:PL:GQ	1/1:39,3,0:6	0/1:33,0,20:18	1/1:0,0,0:4	1/1:139,15,0:17
20	6437967	.	C	A	168	.	DP=10;VDB=0.0199;AF1=0.8253;AC1=7;DP4=0,1,2,5;MQ=57;FQ=-5.96;PV4=1,0.044,0.37,1	GT:PL:GQ	1/1:29,3,0:7	1/1:32,3,0:7	1/1:89,9,0:12	0/1:59,0,29:26
20	6506015	.	T	C	25	.	DP=14;VDB=0.0202;AF1=0.2457;AC1=2;DP4=6,4,2,0;MQ=56;FQ=26.2;PV4=0.52,1,1,0.076	GT:PL:GQ	0/1:64,6,0:4	0/0:0,9,87:12	0/0:0,0,0:4	0/0:0,21,162:24
20	6513935	.	G	A	104	.	DP=10;VDB=0.0532;AF1=0.5532;AC1=4;DP4=2,1,1,5;MQ=60;FQ=49.2;PV4=0.23,1,1,0.39	GT:PL:GQ	0/0:0,9,85:7	0/1:0,0,0:3	0/1:0,0,0:3	1/1:143,18,0:15
20	6563757	.	TTACA	TTACAATACA	12.5	.	INDEL;DP=10;VDB=0.0075;AF1=0.2914;AC1=2;DP4=4,4,1,1;MQ=55;FQ=13.9;PV4=1,1,0,1	GT:PL:GQ	0/0:0,0,0:4	0/1:58,6,0:4	0/0:0,3,60:6	0/0:0,21,255:23
20	6626140	.	T	A	141	.	DP=12;VDB=0.0352;AF1=0.6468;AC1=5;DP4=1,2,3,4;MQ=58;FQ=41.7;PV4=1,0.25,1,1	GT:PL:GQ	0/1:23,0,53:28	1/1:85,9,0:9	0/1:0,0,0:3	0/1:74,0,25:26
20	6626218	.	G	A	68.7	.	DP=11;VDB=0.0153;AF1=0.4528;AC1=4;DP4=4,3,1,3;MQ=60;FQ=71.3;PV4=0.55,1,1,1	GT:PL:GQ	1/1:67,6,0:4	0/1:43,0,63:45	0/1:0,0,0:3	0/0:0,12,122:11
20	6646252	.	TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC	TTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC	65.7	.	INDEL;DP=10;VDB=0.0274;AF1=0.5021;AC1=4;DP4=2,0,0,3;MQ=55;FQ=5.3;PV4=0.1,1,0.25,0.1	GT:PL:GQ	0/1:29,29,29:3	0/1:0,0,0:3	0/1:54,0,19:23	0/1:54,0,24:28
20	6662309	.	T	A	999	.	DP=116;VDB=0.0412;AF1=0.25;AC1=2;DP4=26,60,9,17;MQ=59;FQ=999;PV4=0.81,0.01,1,0.39	GT:PL:GQ	0/1:159,0,252:99	0/1:153,0,255:99	0/0:0,66,255:68	0/0:0,45,255:47
20	6662314	.	C	G	999	.	DP=109;VDB=0.0289;AF1=0.375;AC1=3;DP4=22,52,4,27;MQ=59;FQ=999;PV4=0.085,1,0.44,1	GT:PL:GQ	0/0:0,105,255:99	0/0:0,105,255:99	1/1:255,60,0:55	0/1:217,0,86:91
20	6662515	.	T	G	19.5	.	DP=22;VDB=0.0221;AF1=0.1393;AC1=1;DP4=1,18,0,2;MQ=60;FQ=20.2;PV4=1,1,1,1	GT:PL:GQ	0/1:55,0,48:49	0/0:0,36,165:41	0/0:0,6,53:11	0/0:0,9,85:14
20	6673542	.	T	C	999	.	DP=19;VDB=0.0344;AF1=0.5128;AC1=4;DP4=2,4,3,10;MQ=60;FQ=115;PV4=1,1,1,0.034	GT:PL:GQ	1/1:215,30,0:27	0/1:94,0,15:18	0/1:0,0,0:3	0/0:0,15,141:12
20	6679139	.	C	T	999	.	DP=17;VDB=0.0288;AF1=0.567;AC1=5;DP4=3,2,2,8;MQ=58;FQ=109;PV4=0.25,0.16,0.25,0.32	GT:PL:GQ	1/1:82,9,0:8	1/1:149,21,0:19	0/1:0,3,40:3	0/0:0,12,115:9
20	6706609	.	G	C	999	.	DP=12;VDB=0.0247;AF1=1;AC1=8;DP4=0,0,6,4;MQ=60;FQ=-33.3	GT:PL:GQ	1/1:130,12,0:21	1/1:68,6,0:15	1/1:0,0,0:9	1/1:135,12,0:21
20	6749158	.	C	A	18.3	.	DP=12;VDB=0.0184;AF1=0.1679;AC1=1;DP4=9,0,1,1;MQ=58;FQ=19.1;PV4=0.18,0.16,1,1	GT:PL:GQ	0/0:0,3,29:8	0/0:0,3,32:8	0/1:53,0,30:40	0/0:0,18,142:22
20	6751034	.	A	G	999	.	DP=98;VDB=0.0444;AF1=0.6266;AC1=5;DP4=7,9,52,15;MQ=59;FQ=999;PV4=0.013,0.3,1,0.5	GT:PL:GQ	0/0:0,24,189:19	0/1:33,0,141:38	1/1:255,99,0:98	1/1:255,63,0:62
20	6751316	.	A	G	156	.	DP=12;VDB=0.0124;AF1=0.4813;AC1=4;DP4=1,2,1,6;MQ=60;FQ=35.1;PV4=1,1,1,1	GT:PL:GQ	0/0:0,3,22:3	0/0:0,3,29:3	1/1:116,12,0:9	0/1:84,0,25:29
20	6759758	.	AATATATATATATATATATAT	AATATATATATATATATATATAT	80.5	.	INDEL;DP=124;VDB=0.0231;AF1=0.3176;AC1=2;DP4=0,40,0,17;MQ=59;FQ=82.2;PV4=1,1,0.0032,0.00042	GT:PL:GQ	0/0:84,88,255:6	0/1:120,0,197:99	0/0:0,0,0:3	0/0:0,0,0:3
20	6840751	.	A	C	111	.	DP=10;VDB=0.0418;AF1=0.3336;AC1=3;DP4=3,2,2,3;MQ=60;FQ=92;PV4=1,1,1,0.14	GT:PL:GQ	0/0:0,0,0:3	0/0:0,3,29:5	0/0:0,0,0:3	0/1:143,0,93:99
