@article{rice2000emboss,
  title={EMBOSS: the European molecular biology open software suite},
  author={Rice, Peter and Longden, Ian and Bleasby, Alan},
  journal={Trends in genetics},
  volume={16},
  number={6},
  pages={276--277},
  year={2000},
  publisher={Elsevier}
}

@article{gilbert2003readseq,
  title={Sequence File Format Conversion with Command-Line Readseq},
  author={Gilbert, Don},
  journal={Current protocols in bioinformatics},
  number={1},
  pages={A--1E},
  year={2003},
  publisher={Wiley Online Library}
}

@article{stajich2002bioperl,
  title={The Bioperl toolkit: Perl modules for the life sciences},
  author={Stajich, Jason E and Block, David and Boulez, Kris and Brenner, Steven E and Chervitz, Stephen A and Dagdigian, Chris and Fuellen, Georg and Gilbert, James GR and Korf, Ian and Lapp, Hilmar and others},
  journal={Genome research},
  volume={12},
  number={10},
  pages={1611--1618},
  year={2002},
  publisher={Cold Spring Harbor Lab}
}

@article{cock2009biopython,
  title={Biopython: freely available Python tools for computational molecular biology and bioinformatics},
  author={Cock, Peter JA and Antao, Tiago and Chang, Jeffrey T and Chapman, Brad A and Cox, Cymon J and Dalke, Andrew and Friedberg, Iddo and Hamelryck, Thomas and Kauff, Frank and Wilczynski, Bartek and others},
  journal={Bioinformatics},
  volume={25},
  number={11},
  pages={1422--1423},
  year={2009},
  publisher={Oxford University Press}
}

@article{pearson1988fasta,
  title={Improved tools for biological sequence comparison},
  author={Pearson, William R and Lipman, David J},
  journal={Proceedings of the National Academy of Sciences},
  volume={85},
  number={8},
  pages={2444--2448},
  year={1988},
  publisher={National Acad Sciences}
}
