/****************************************************************************
 *
 * MODULE:       r.li.mpa
 * AUTHOR(S):    Serena Pallecchi (original contributor)
 *                student of Computer Science University of Pisa (Italy)
 *               Commission from Faunalia Pontedera (PI) www.faunalia.it
 *               Rewrite: Markus Metz
 *
 * PURPOSE:      calculates mean pixel attribute index
 * COPYRIGHT:    (C) 2007-2014 by the GRASS Development Team
 *
 *               This program is free software under the GNU General Public
 *               License (>=v2). Read the file COPYING that comes with GRASS
 *               for details.
 *
 *****************************************************************************/

#include <grass/gis.h>
#include <grass/raster.h>
#include <grass/glocale.h>

#include <stdlib.h>
#include <fcntl.h>
#include <math.h>

#include "../r.li.daemon/defs.h"
#include "../r.li.daemon/daemon.h"

rli_func meanPixelAttribute;
int calculate(int fd, struct area_entry *ad, double *result);
int calculateD(int fd, struct area_entry *ad, double *result);
int calculateF(int fd, struct area_entry *ad, double *result);

int main(int argc, char *argv[])
{
    struct Option *raster, *conf, *output;
    struct GModule *module;

    G_gisinit(argv[0]);
    module = G_define_module();
    module->description =
        _("Calculates mean pixel attribute index on a raster map");
    G_add_keyword(_("raster"));
    G_add_keyword(_("landscape structure analysis"));
    G_add_keyword(_("patch index"));
    /* define options */

    raster = G_define_standard_option(G_OPT_R_INPUT);

    conf = G_define_standard_option(G_OPT_F_INPUT);
    conf->key = "config";
    conf->description = _("Configuration file");
    conf->required = YES;

    output = G_define_standard_option(G_OPT_R_OUTPUT);

    if (G_parser(argc, argv))
        exit(EXIT_FAILURE);

    return calculateIndex(conf->answer, meanPixelAttribute, NULL,
                          raster->answer, output->answer);
}

int meanPixelAttribute(int fd, char **par G_UNUSED, struct area_entry *ad,
                       double *result)
{
    int ris = 0;
    double indice = 0;

    switch (ad->data_type) {
    case CELL_TYPE: {
        ris = calculate(fd, ad, &indice);
        break;
    }
    case DCELL_TYPE: {
        ris = calculateD(fd, ad, &indice);
        break;
    }
    case FCELL_TYPE: {
        ris = calculateF(fd, ad, &indice);
        break;
    }
    default: {
        G_fatal_error("data type unknown");
    }
    }
    if (ris != RLI_OK) {
        return RLI_ERRORE;
    }

    *result = indice;

    return RLI_OK;
}

int calculate(int fd, struct area_entry *ad, double *result)
{
    CELL *buf;

    int i, j;
    int mask_fd = -1, *mask_buf = NULL;
    int masked = FALSE;

    double area = 0;
    double somma = 0;

    /* open mask if needed */
    if (ad->mask == 1) {
        if ((mask_fd = open(ad->mask_name, O_RDONLY, 0755)) < 0) {
            G_fatal_error("can't open mask");
        }
        mask_buf = G_malloc(ad->cl * sizeof(int));
        if (mask_buf == NULL) {
            close(mask_fd);
            G_fatal_error("malloc mask_buf failed");
        }
        masked = TRUE;
    }

    for (j = 0; j < ad->rl; j++) {
        buf = RLI_get_cell_raster_row(fd, j + ad->y, ad);

        if (masked) {
            if (read(mask_fd, mask_buf, (ad->cl * sizeof(int))) < 0) {
                close(mask_fd);
                G_fatal_error("mask read failed");
            }
        }

        for (i = 0; i < ad->cl; i++) {
            if (masked && mask_buf[i] == 0) {
                Rast_set_c_null_value(&buf[i + ad->x], 1);
            }
            if (!(Rast_is_c_null_value(&buf[i + ad->x]))) {
                area++;
                somma = somma + buf[i + ad->x];
            }
        }
    }

    if (area > 0)
        *result = somma / area;
    else
        Rast_set_d_null_value(result, 1);

    if (masked) {
        close(mask_fd);
        G_free(mask_buf);
    }

    return RLI_OK;
}

int calculateD(int fd, struct area_entry *ad, double *result)
{
    DCELL *buf;

    int i, j;
    int mask_fd = -1, *mask_buf = NULL;
    int masked = FALSE;

    double area = 0;
    double somma = 0;

    /* open mask if needed */
    if (ad->mask == 1) {
        if ((mask_fd = open(ad->mask_name, O_RDONLY, 0755)) < 0) {
            G_fatal_error("can't open mask");
        }
        mask_buf = G_malloc(ad->cl * sizeof(int));
        if (mask_buf == NULL) {
            close(mask_fd);
            G_fatal_error("malloc mask_buf failed");
        }
        masked = TRUE;
    }

    for (j = 0; j < ad->rl; j++) {
        buf = RLI_get_dcell_raster_row(fd, j + ad->y, ad);

        if (masked) {
            if (read(mask_fd, mask_buf, (ad->cl * sizeof(int))) < 0) {
                close(mask_fd);
                G_fatal_error("mask read failed");
            }
        }

        for (i = 0; i < ad->cl; i++) {
            if (masked && mask_buf[i] == 0) {
                Rast_set_d_null_value(&buf[i + ad->x], 1);
            }
            if (!(Rast_is_d_null_value(&buf[i + ad->x]))) {
                area++;
                somma = somma + buf[i + ad->x];
            }
        }
    }

    if (area > 0)
        *result = somma / area;
    else
        Rast_set_d_null_value(result, 1);

    if (masked) {
        close(mask_fd);
        G_free(mask_buf);
    }

    return RLI_OK;
}

int calculateF(int fd, struct area_entry *ad, double *result)
{
    FCELL *buf;

    int i, j;
    int mask_fd = -1, *mask_buf = NULL;
    int masked = FALSE;

    double area = 0;
    double somma = 0;

    /* open mask if needed */
    if (ad->mask == 1) {
        if ((mask_fd = open(ad->mask_name, O_RDONLY, 0755)) < 0) {
            G_fatal_error("can't open mask");
        }
        mask_buf = G_malloc(ad->cl * sizeof(int));
        if (mask_buf == NULL) {
            close(mask_fd);
            G_fatal_error("malloc mask_buf failed");
        }
        masked = TRUE;
    }

    for (j = 0; j < ad->rl; j++) {
        buf = RLI_get_fcell_raster_row(fd, j + ad->y, ad);

        if (masked) {
            if (read(mask_fd, mask_buf, (ad->cl * sizeof(int))) < 0) {
                close(mask_fd);
                G_fatal_error("mask read failed");
            }
        }

        for (i = 0; i < ad->cl; i++) {
            if (masked && mask_buf[i] == 0) {
                Rast_set_f_null_value(&buf[i + ad->x], 1);
            }
            if (!(Rast_is_f_null_value(&buf[i + ad->x]))) {
                area++;
                somma = somma + buf[i + ad->x];
            }
        }
    }

    if (area > 0)
        *result = somma / area;
    else
        Rast_set_d_null_value(result, 1);

    if (masked) {
        close(mask_fd);
        G_free(mask_buf);
    }

    return RLI_OK;
}
