bowtie (1.0.0-5) unstable; urgency=low

  * Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target
    instead of override_dh_fixperms in debian/rules.

 -- Ognyan Kulev <ogi@debian.org>  Thu, 30 May 2013 09:41:25 +0300

bowtie (1.0.0-4) unstable; urgency=low

  * Lintian fixes:
    - Removed DM-Upload-Allowed field.
    - Standards Version 3.9.4 (no changes needed).
    - Remove execute bits on some files in bowtie-examples.
  * Don't compress *.ebwt index files in bowtie-examples package.
  * Package description now starts with a capital letter.
  
 -- Ognyan Kulev <ogi@debian.org>  Wed, 29 May 2013 22:53:13 +0300

bowtie (1.0.0-3) unstable; urgency=low

  * New patch no_hash_style_both_for_mips.patch.
    This fixes build errors on mips and mipsel.

 -- Ognyan Kulev <ogi@debian.org>  Wed, 24 Apr 2013 15:15:37 +0300

bowtie (1.0.0-2) unstable; urgency=low

  * Requires version 1.3 of SeqAn.
  * Updated README.source about using Debian's SeqAn library.
  * Removed machine_bits_detection.patch and added disable_bits_flag.patch.

 -- Ognyan Kulev <ogi@debian.org>  Wed, 24 Apr 2013 10:49:47 +0300

bowtie (1.0.0-1) unstable; urgency=low

  * New upstream version. (Closes: #705616)
  * Refreshed patches: use_debian_seqan.patch, use-dpkg-buildflags.patch.
  * Removed patch gcc-4.7.patch (fixed upstream).
  * New patch machine_bits_detection.patch.
  * Added build dependancy on seqan-dev.
  * Activated use_debian_seqan.patch and added the following patches:
    - seqan-fix-setBegin-call.patch
    - seqan-rename-ChunkPool.patch
    - seqan-rename-fill-to-resize.patch
  * Added myself to Uploaders control field.

 -- Ognyan Kulev <ogi@debian.org>  Tue, 23 Apr 2013 16:43:49 +0300

bowtie (0.12.7-3) unstable; urgency=low

  * debian/patches/use-dpkg-buildflags.patch: Regard LDFLAGS/CPPFLAGS
    hardening flags (thanks for the patch to Simon Ruderich
    <simon@ruderich.org>)
    Closes: #670230

 -- Andreas Tille <tille@debian.org>  Tue, 24 Apr 2012 13:21:32 +0200

bowtie (0.12.7-2) unstable; urgency=low

  * Do not give a pointer to non existing info pages in manpages
  * debian/control:
     - fixed Vcs fields
     - Standards-Version: 3.9.3 (no changes needed)
  * debian/upstream: Add citation information
  * debian/rules: calculate pkg name instead of setting it
  * debian/copyright: DEP5 verified using
     cme fix dpkg-copyright
  * debian/patches/gcc-4.7.patch: function "reverseInPlace" is declared after
    the function is used
    Thanks to Rodolfo García Peñas <kix@kix.es> and
    gregor herrmann <gregoa@debian.org>
    Closes: #667120
  * debhelper 9 (control+compat)
    Hardening flags were explicitly tested but not enforced in debian/rules

 -- Andreas Tille <tille@debian.org>  Sun, 22 Apr 2012 21:09:05 +0200

bowtie (0.12.7-1) unstable; urgency=low

  * Initial release (Closes: #604940)

 -- Andreas Tille <tille@debian.org>  Wed, 02 Feb 2011 13:47:12 +0100
