<opt
  name="toacode"
  date="20051200"

  addids="0"
  allowanyfeat="0"
  dogzip="0"
  >
<!-- these opts are overridden by  filesets.xml ; defaults are here -->
 
  <title>Gene acode objects</title>
  <about>
  Valid options include
  
  addids = "1" ; add comparable ID dbxrefs from feature data ;
      e.g. CDS,mRNA,... will get dbxref from genes, if flagged with
      add_id="1" in featuresets
  dropnotes = "synonym_2nd,synonym"; 
    dont include these extra attributes in header
  allowanyfeat = 1; 
    override featureset configs to include all basic feature types
    
  </about>

  <informat>fff</informat>  

  <noIDmap>chromosome|golden_path\b|source|misc|match|motif|sim4
    oligo|processed|protein|repeat|regulatory_region|repeat_region</noIDmap>
  <!-- mRNA|CDS|EST|cDNA|intron|enhancer|
   _fragment|_junction|_mutation|_peptide|_site|_UTR|_variant 
   -->
 
  <indexidtype>^(gene|pseudogene|\w+RNA)</indexidtype>
  <indexsubtype>^(mRNA|CDS)</indexsubtype>
  <gnidpattern>[A-Z]{2}gn\d+</gnidpattern>
  <anidpattern>[A-Z]{2}an\d+</anidpattern>

<!--   <indexidtype>^(transposable_element|transposable_element_insertion_site)</indexidtype> -->
<!--   <indexsubtype>^(NONE)</indexsubtype>  -->
<!--   <gnidpattern>[A-Z]{2}ti\d+</gnidpattern> -->
<!--   <anidpattern>[A-Z]{2}ti\d+</anidpattern> -->
  
  <idcutdb>^(FlyBase|Gadfly|GB_protein|GO):</idcutdb>
  

</opt>
