<opt
  name="fbbulk-r3h"
  relid="h3"
  >
  <!-- see site_defaults for more included configs -->
  <include>site_defaults</include>
  
  <title>DHGP/FlyBase Heterochromatin rel 3.2</title>
  
  <doc name="Release.txt"><![CDATA[
    D. melanogaster heterochomatin genome data from 
    Drosophila Heterochromatin Genome Project, www.dhgp.org
    Release 3.2
    See release notes at <a href="http://flybase.net/${release_url}">
    http://flybase.net/${release_url}</a>
  ]]></doc>
  
  <!-- this could/should be from include flybase-release.xml 
    want default release/db xml that this overrides where needed?
  -->
  
  <release id="3" 
    rel="r3.2.1" 
    relfull="dmel_r3.2.1_07212004"
    dbname="chado_r3_2_27" 
    date="20040804" 
    release_url="/annot/release3.2.1.html"
    />
  <release id="h3" 
    rel="r3_2h"  
    dbname="chadohet_081604" 
    relfull="dmel_hetr3_2_08162004"
    date="20040821" 
    release_url="/annot/het-release3.2.html"
    />


  <include>fbreleases</include>

  <!-- oct04: patch for utr fmax < fmin when 0 length -->
  <utrpatch>1</utrpatch>
  <!-- oct04: patch for intron  fmin - no+1,fmax, add+1 -->
  <intronpatch>1</intronpatch>


  <db
    driver="Pg"
    name="dmelhet_chado"
    host="localhost"
    port="7302"
    user=""
    password=""
    />

  <org>dmel</org>
  <species>Drosophila melanogaster</species>

  <dnadump
    path="dna/.+\.raw"
    sql="select feature_id, residues from feature where uniquename = ?"
    type="dna_dump"
    />

  <featdump
    path="tmp/featdump/\w+.tsv"
    config="chadofeatsql"
    tag="feature_sql"
    type="feature_table"
    splitname="chadofeat"
    >
<!--     <target>fbids</target> // accessory table ; fixme -->
    <target>chromosomes</target>
    <target>features</target>
    <target>analysis</target>

    <!--  <target>matches</target>  -->
    <!-- drop matches for analysis which has same/better info 
      hetr32 matches has only generic 'alignment' and 'sim4:wrap...'
    -->

  </featdump>
  
  
  <fileset_override
    name="fff"
    path="fff/.+\.fff"
    input="feature_table"
    title="FFF Genome features"
    config="dmelhetfeatconv"
    handler="FeatureWriter"
    dogzip="1"
    />
  <fileset_override name="dummy"/>
  
 
  <!-- use to add parent ids to features .. change tag parentidpattern ? -->
  <idpattern>(FBgn|FBti)\d+</idpattern>

 
</opt>
