
<<include ideogram.conf>>

chromosomes_units = 100
<<include ticks.conf>>

<image>
angle_offset* = -87
<<include etc/image.conf>>
</image>

### single genomes

karyotype = data/segments.txt

<<include etc/segment.order.conf>>

chromosomes_reverse = /.*-l/

hm_r      = 1.3
hm_w      = 0.025
hm_pad    = 0.005

#hm_colors = greys-4-seq,greys-4-seq,greys-4-seq,greys-4-seq,greys-4-seq
hm_colors = reds-4-seq,oranges-4-seq,greens-4-seq,blues-4-seq,purples-4-seq

<plots>

<<include heatmap.conf>>
<<include heatmap.conf>>
<<include heatmap.conf>>
<<include heatmap.conf>>
<<include heatmap.conf>>

<plot>
type       = text
file       = data/structure.label.txt
color      = black
label_font = default
label_size = 20
r0         = 1.325r
r1         = 1.75r
rpadding   = 10p
</plot>

</plots>

<links>

<link>
file   = data/links.txt
radius = dims(ideogram,radius_inner)

bezier_radius = 0r
bezier_radius_purity = 0.5
crest         = 0.25
thickness     = 2
color         = black

<rules>
<rule>
condition = var(chr1) eq var(chr2)
bezier_radius = 1.25r
radius    = dims(ideogram,radius_outer)
flow      = continue
</rule>
<rule>
condition = 1
thickness = eval(remap_int(var(score),0,1,1,5)) 
flow      = continue
</rule>
<rule>
condition = var(type) == 0 
color     = eval(sprintf("greys-5-seq-%d",remap_int(var(score),0,1,1,5)))
</rule>
<rule>
condition = var(type) == 1
color     = eval(sprintf("reds-5-seq-%d",remap_int(var(score),0,1,1,5)))
</rule>
</rules>

</link>

</links>

<<include etc/colors_fonts_patterns.conf>>
<colors>
<<include color.brain.conf>>
</colors>

restrict_parameter_names* = no
<<include etc/housekeeping.conf>>



