/* BEGIN software license
 *
 * msXpertSuite - mass spectrometry software suite
 * -----------------------------------------------
 * Copyright(C) 2009,...,2018 Filippo Rusconi
 *
 * http://www.msxpertsuite.org
 *
 * This file is part of the msXpertSuite project.
 *
 * The msXpertSuite project is the successor of the massXpert project. This
 * project now includes various independent modules:
 *
 * - massXpert, model polymer chemistries and simulate mass spectrometric data;
 * - mineXpert, a powerful TIC chromatogram/mass spectrum viewer/miner;
 *
 * This program is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 *
 * END software license
 */


#ifndef CLEAVE_OLIGOMER_HPP
#define CLEAVE_OLIGOMER_HPP


/////////////////////// Local includes
#include <massxpert/nongui/Oligomer.hpp>


namespace msXpSmassXpert
{

class CleaveOligomer : public Oligomer
{
  protected:
  int m_partialCleavage;

  public:
  CleaveOligomer(Polymer *,
                 const QString &name,
                 const QString &description,
                 bool modified,
                 const Ponderable &  = Ponderable(),
                 int startIndex      = -1,
                 int endIndex        = -1,
                 int partialCleavage = 0,
                 const CalcOptions & = CalcOptions());

  CleaveOligomer(Polymer *,
                 const QString &name,
                 const QString &description,
                 bool modified,
                 double mono         = 0,
                 double avg          = 0,
                 int startIndex      = -1,
                 int endIndex        = -1,
                 int partialCleavage = 0,
                 const CalcOptions & = CalcOptions());

  CleaveOligomer(const CleaveOligomer &);

  void setPartialCleavage(int);
  int partialCleavage() const;
};

} // namespace msXpSmassXpert


#endif // CLEAVE_OLIGOMER_HPP
