MANIFEST
Makefile.PL
README
Changes
PLATFORMS
bioperl.pod
Bio/Parse.pm
Bio/Root/Err.pm
Bio/Root/Global.pm
Bio/Root/IOManager.pm
Bio/Root/Object.pm
Bio/Root/Utilities.pm
Bio/Root/Vector.pm
Bio/Root/Xref.pm
Bio/Seq.pm
Bio/SimpleAlign.pm
Bio/Tools/AlignFactory.pm
Bio/Tools/Blast.pm
Bio/Tools/Blast/HSP.pm
Bio/Tools/Blast/HTML.pm
Bio/Tools/Blast/Run/LocalBlast.pm
Bio/Tools/Blast/Run/Makefile.PL
Bio/Tools/Blast/Run/Webblast.pm
Bio/Tools/Blast/Run/postclient.pl
Bio/Tools/Blast/Sbjct.pm
Bio/Tools/Fasta.pm
Bio/Tools/SeqAnal.pm
Bio/Tools/WWW.pm
Bio/Tools/pSW.pm
Bio/Tools/RestrictionEnzyme.pm
t/Seq.t
t/SimpleAlign.t
t/Blast.t              
t/HTML.t               
t/Seq.t                
t/WWW.t
t/Fasta.t              
t/RestrictionEnzyme.t  
t/SeqAnal.t
t/HSP.t                
t/Sbjct.t              
t/SimpleAlign.t
examples/restriction.pl
examples/rev_and_trans.pl
examples/root_object/Bar.pm
examples/root_object/Foo.pm
examples/root_object/Outer.pm
examples/root_object/error.out
examples/root_object/error.pl
examples/root_object/filehandle.out
examples/root_object/filehandle.pl
examples/root_object/read.pl
examples/root_object/read.test
examples/root_object/read.test2
examples/root_object/read.test3
Compile/SW/Makefile.PL
Compile/SW/bp_sw.pm
Compile/SW/bp_sw.xs
Compile/SW/libs/aln.c
Compile/SW/libs/aln.h
Compile/SW/libs/alnconvert.c
Compile/SW/libs/alnconvert.h
Compile/SW/libs/alnrange.c
Compile/SW/libs/alnrange.h
Compile/SW/libs/asciibtcanvas.c
Compile/SW/libs/asciibtcanvas.h
Compile/SW/libs/basematrix.c
Compile/SW/libs/basematrix.h
Compile/SW/libs/btcanvas.c
Compile/SW/libs/btcanvas.h
Compile/SW/libs/cdna.c
Compile/SW/libs/cdna.h
Compile/SW/libs/cdnadb.c
Compile/SW/libs/cdnadb.h
Compile/SW/libs/codon.c
Compile/SW/libs/codon.h
Compile/SW/libs/codonmapper.c
Compile/SW/libs/codonmapper.h
Compile/SW/libs/codonmatrix.c
Compile/SW/libs/codonmatrix.h
Compile/SW/libs/commandline.c
Compile/SW/libs/commandline.h
Compile/SW/libs/complexconsensi.c
Compile/SW/libs/complexconsensi.h
Compile/SW/libs/complexevalset.c
Compile/SW/libs/complexevalset.h
Compile/SW/libs/complexsequence.c
Compile/SW/libs/complexsequence.h
Compile/SW/libs/compmat.c
Compile/SW/libs/compmat.h
Compile/SW/libs/database.h
Compile/SW/libs/dna.c
Compile/SW/libs/dna.h
Compile/SW/libs/dnamatrix.c
Compile/SW/libs/dnamatrix.h
Compile/SW/libs/dpenvelope.c
Compile/SW/libs/dpenvelope.h
Compile/SW/libs/dyna.h
Compile/SW/libs/dynlibcross.c
Compile/SW/libs/dynlibcross.h
Compile/SW/libs/embl.c
Compile/SW/libs/embl.h
Compile/SW/libs/gene.c
Compile/SW/libs/gene.h
Compile/SW/libs/genomic.c
Compile/SW/libs/genomic.h
Compile/SW/libs/genomicdb.c
Compile/SW/libs/genomicdb.h
Compile/SW/libs/genomicregion.c
Compile/SW/libs/genomicregion.h
Compile/SW/libs/histogram.c
Compile/SW/libs/histogram.h
Compile/SW/libs/hscore.c
Compile/SW/libs/hscore.h
Compile/SW/libs/linesubs.c
Compile/SW/libs/linesubs.h
Compile/SW/libs/makefile
Compile/SW/libs/packaln.c
Compile/SW/libs/packaln.h
Compile/SW/libs/probability.c
Compile/SW/libs/probability.h
Compile/SW/libs/protein.c
Compile/SW/libs/protein.h
Compile/SW/libs/proteindb.c
Compile/SW/libs/proteindb.h
Compile/SW/libs/proteinsw.c
Compile/SW/libs/proteinsw.h
Compile/SW/libs/seqaligndisplay.c
Compile/SW/libs/seqaligndisplay.h
Compile/SW/libs/sequence.c
Compile/SW/libs/sequence.h
Compile/SW/libs/sequencedb.c
Compile/SW/libs/sequencedb.h
Compile/SW/libs/sw.h
Compile/SW/libs/sw_wrap.c
Compile/SW/libs/sw_wrap.h
Compile/SW/libs/transcript.c
Compile/SW/libs/transcript.h
Compile/SW/libs/translation.c
Compile/SW/libs/translation.h
Compile/SW/libs/wisebase.h
Compile/SW/libs/wiseconfig.c
Compile/SW/libs/wiseconfig.h
Compile/SW/libs/wiseerror.c
Compile/SW/libs/wiseerror.h
Compile/SW/libs/wisefile.c
Compile/SW/libs/wisefile.h
Compile/SW/libs/wisememman.c
Compile/SW/libs/wisememman.h
Compile/SW/libs/wiseoverlay.c
Compile/SW/libs/wiseoverlay.h
Compile/SW/libs/wiserandom.c
Compile/SW/libs/wiserandom.h
Compile/SW/libs/wisestring.c
Compile/SW/libs/wisestring.h
Compile/SW/libs/wisetime.c
Compile/SW/libs/wisetime.h
Compile/SW/test.pl
Compile/SW/typemap








