#!/usr/bin/env perl

package Bio::Roary::Main::ProteinMuscleAlignmentFromNucleotides;
$Bio::Roary::Main::ProteinMuscleAlignmentFromNucleotides::VERSION = '3.0.0';
# ABSTRACT: Take in a multifasta file of nucleotides, convert to proteins and align with muscle
# PODNAME: protein_muscle_alignment_from_nucleotides


BEGIN { unshift( @INC, '../lib' ) }
BEGIN { unshift( @INC, './lib' ) }
use Bio::Roary::CommandLine::ProteinMuscleAlignmentFromNucleotides;

Bio::Roary::CommandLine::ProteinMuscleAlignmentFromNucleotides->new(args => \@ARGV, script_name => $0)->run;

__END__

=pod

=encoding UTF-8

=head1 NAME

protein_muscle_alignment_from_nucleotides - Take in a multifasta file of nucleotides, convert to proteins and align with muscle

=head1 VERSION

version 3.0.0

=head1 SYNOPSIS

Take in a multifasta file of nucleotides, convert to proteins and align with muscle

=head1 AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

=head1 COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007

=cut
