0000000000000000000000000000000000000000 e6eff4756f952cd8ccc366d7509e08532887f528 Robert Buels <rmb32@cornell.edu> 1244749905 -0700	commit (initial): initial commit
e6eff4756f952cd8ccc366d7509e08532887f528 3f70c43d01b9f64c20a1d017bbc99a84aa723c85 Robert Buels <rmb32@cornell.edu> 1244749939 -0700	commit: that script should not be in lib
3f70c43d01b9f64c20a1d017bbc99a84aa723c85 ca509eadff347616430259a729e08233f9021cca Robert Buels <rmb32@cornell.edu> 1244847567 -0700	commit: these scripts i'm working on are actually maintenance scripts
ca509eadff347616430259a729e08233f9021cca d77762fb2bfc2eda894fcf7fbc4cbef662d9744a Robert Buels <rmb32@cornell.edu> 1244847669 -0700	commit: added emacs backup files to .gitignore
d77762fb2bfc2eda894fcf7fbc4cbef662d9744a ee25713d6e0deaa15c17c43719fd8cd6aa2eeec4 Robert Buels <rmb32@cornell.edu> 1244848299 -0700	commit: update_dbic_dump.pl outline in place
ee25713d6e0deaa15c17c43719fd8cd6aa2eeec4 827cac23481a0fba39f6ce461f4e46c18ac18ef7 Robert Buels <rmb32@cornell.edu> 1244852691 -0700	commit: a bit of fleshing out of the update_dbic_dump.pl
827cac23481a0fba39f6ce461f4e46c18ac18ef7 bbcda99883ab8f4ca06a12c267d84db643b41ae8 Robert Buels <rmb32@cornell.edu> 1245446267 -0700	commit: dbic dump script is making something that is starting to look semi-correct
bbcda99883ab8f4ca06a12c267d84db643b41ae8 dc8cb6a82f93257d98b58c6f566e142db434e82d Robert Buels <rmb32@cornell.edu> 1245699319 -0700	commit: added first version of chado dbic classes
dc8cb6a82f93257d98b58c6f566e142db434e82d dedd8174e9e5a565a940607f9eb27e9ac97e311c Robert Buels <rmb32@cornell.edu> 1245786894 -0700	commit: moved chado overall schema module to proper place
dedd8174e9e5a565a940607f9eb27e9ac97e311c dc8cb6a82f93257d98b58c6f566e142db434e82d Robert Buels <rmb32@cornell.edu> 1245786926 -0700	dc8cb: updating HEAD
dc8cb6a82f93257d98b58c6f566e142db434e82d 1645ae7c26eb127a2611a207f4b1876ee40ee78c Robert Buels <rmb32@cornell.edu> 1245786972 -0700	commit: fixed overall schema module
1645ae7c26eb127a2611a207f4b1876ee40ee78c 2a298548cfe36fcef5871f7db67f94941b4515cf Robert Buels <rmb32@cornell.edu> 1245822143 -0700	commit: some improvements to update script, added shell script that tests the updater
2a298548cfe36fcef5871f7db67f94941b4515cf 459c52896ab881c469901ffec4542adfa5917471 Robert Buels <rmb32@cornell.edu> 1245822550 -0700	commit: disabled singular inflection of table names for updating script (which is default in newer versions of dbicsl)
459c52896ab881c469901ffec4542adfa5917471 2a298548cfe36fcef5871f7db67f94941b4515cf Robert Buels <rmb32@cornell.edu> 1245822570 -0700	2a298548cfe36fcef5871f7db67f94941b4515cf: updating HEAD
2a298548cfe36fcef5871f7db67f94941b4515cf 370c709390763fd7105ee8221afd527fc5d2304d Robert Buels <rmb32@cornell.edu> 1245822584 -0700	commit: disabled singular inflection of table names for updating script (which is default in newer versions of dbicsl)
370c709390763fd7105ee8221afd527fc5d2304d e88d34c5b2514cb187abe69c0cfd3a0feded6789 Robert Buels <rmb32@cornell.edu> 1245822814 -0700	commit: updated dump of schema objects, with new version of dbicsl
e88d34c5b2514cb187abe69c0cfd3a0feded6789 5d31e214f02ce8ff88604ee67483866c6942b8e6 Robert Buels <rmb32@cornell.edu> 1245823534 -0700	commit: beginnings of test directory
5d31e214f02ce8ff88604ee67483866c6942b8e6 985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 Robert Buels <rmb32@cornell.edu> 1245894671 -0700	commit: no need to have one test script for just "use"
985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 2cef018c18b8ebaeff19a094afbe6cb207a17a46 Robert Buels <rmb32@cornell.edu> 1245897381 -0700	commit: removed personal test script for updater script
2cef018c18b8ebaeff19a094afbe6cb207a17a46 985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 Robert Buels <rmb32@cornell.edu> 1245897420 -0700	985dee0dc5d830a0a1c9f59c16f79a8a036d23e8: updating HEAD
985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 2cef018c18b8ebaeff19a094afbe6cb207a17a46 Robert Buels <rmb32@cornell.edu> 1245897440 -0700	2cef018c18b8ebaeff19a094afbe6cb207a17a46: updating HEAD
2cef018c18b8ebaeff19a094afbe6cb207a17a46 985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 Robert Buels <rmb32@cornell.edu> 1245897457 -0700	985dee0dc5d830a0a1c9f59c16f79a8a036d23e8: updating HEAD
985dee0dc5d830a0a1c9f59c16f79a8a036d23e8 2cef018c18b8ebaeff19a094afbe6cb207a17a46 Robert Buels <rmb32@cornell.edu> 1245897476 -0700	2cef018c18b8ebaeff19a094afbe6cb207a17a46: updating HEAD
2cef018c18b8ebaeff19a094afbe6cb207a17a46 b271200eb93803560de0887be90452ea5e727544 Robert Buels <rmb32@cornell.edu> 1245898550 -0700	commit: in updater maint script, added better docs and support for checking out a fresh schema copy
b271200eb93803560de0887be90452ea5e727544 ce12b7bc434fe3291bd2212818510f280b13193b Robert Buels <rmb32@cornell.edu> 1245899041 -0700	commit: added Build.PL
ce12b7bc434fe3291bd2212818510f280b13193b f152a77b2c7360e09a1cc34b1bbea0ae9e2d9537 Robert Buels <rmb32@cornell.edu> 1245904878 -0700	commit: added connection env var to basics test
f152a77b2c7360e09a1cc34b1bbea0ae9e2d9537 93ea021050938fcce715f8a865ee8dcc6690c81f Robert Buels <rmb32@cornell.edu> 1246208101 -0700	commit: beginnings of working tests
93ea021050938fcce715f8a865ee8dcc6690c81f 717631198b2fea2a4fb58d6555549c4f9b56b85b Robert Buels <rmb32@cornell.edu> 1249401313 -0700	commit: removed unnecessary find_tables_views.pl script
717631198b2fea2a4fb58d6555549c4f9b56b85b 4289c8635e36e9a81d9d5a479e1ade2c1ecb28d8 Robert Buels <rmb32@cornell.edu> 1249401628 -0700	commit: schema connection test works, at least
4289c8635e36e9a81d9d5a479e1ade2c1ecb28d8 458a1c7c6112f8f1a3ecf608fa2c337dba7718b1 Robert Buels <rmb32@cornell.edu> 1249402019 -0700	commit: improved updater script POD
458a1c7c6112f8f1a3ecf608fa2c337dba7718b1 298dd057a510ea0add67f0c766ad07a320cdf0e3 Robert Buels <rmb32@cornell.edu> 1249418268 -0700	commit: added Spork S5 slides for Oxford GMOD meeting
298dd057a510ea0add67f0c766ad07a320cdf0e3 f22ee5b36c08f88358e8ec1c7e29167c53b41687 Robert Buels <rmb32@cornell.edu> 1249590786 -0700	commit: manually added some relationships
f22ee5b36c08f88358e8ec1c7e29167c53b41687 293dcabdd5d517ea0d92e76a775411ce74c228b4 Robert Buels <rmb32@cornell.edu> 1250365708 -0700	pull git://github.com/cybersiddhu/dbic_chado.git chado-oracle: Merge made by recursive.
293dcabdd5d517ea0d92e76a775411ce74c228b4 f22ee5b36c08f88358e8ec1c7e29167c53b41687 Robert Buels <rmb32@cornell.edu> 1250366026 -0700	f22ee5b36c08f88358e8ec1c7e29167c53b41687: updating HEAD
f22ee5b36c08f88358e8ec1c7e29167c53b41687 4663aa0a892c7a12033681eb991a144af8853b10 Robert Buels <rmb32@cornell.edu> 1250377505 -0700	commit: added Changes file
4663aa0a892c7a12033681eb991a144af8853b10 5a25c304cf788ed6c7130993af298caffa2a3847 Robert Buels <rmb32@cornell.edu> 1250379911 -0700	commit: added some POD to Chado::Schema
5a25c304cf788ed6c7130993af298caffa2a3847 bfafbf938b48af7f2b3a24ae93dfe56531c3fcd8 Robert Buels <rmb32@cornell.edu> 1250380274 -0700	commit: poking at tests
bfafbf938b48af7f2b3a24ae93dfe56531c3fcd8 087927cafe0341215d0c5061027377310e53a67a Robert Buels <rmb32@cornell.edu> 1250380334 -0700	commit: tweaked schema pod
087927cafe0341215d0c5061027377310e53a67a c39b05f1b85b1272fa9c43b3d2ddbf2d8d75ae38 Robert Buels <rmb32@cornell.edu> 1250381517 -0700	commit: tweaked Build.PL for first development release on CPAN
c39b05f1b85b1272fa9c43b3d2ddbf2d8d75ae38 3b7205a63920ef2a85f2c16e5e2d0cd6374385e7 Robert Buels <rmb32@cornell.edu> 1250381669 -0700	commit: corrected incorrect skip count
3b7205a63920ef2a85f2c16e5e2d0cd6374385e7 f770b0572d528aa70b921d1fe199bc4dc17d9a36 Robert Buels <rmb32@cornell.edu> 1250382049 -0700	commit: bumped devel release to _02 for the test fix
f770b0572d528aa70b921d1fe199bc4dc17d9a36 6cd881a3a88252334a20c43aba5f8f2105962116 Robert Buels <rmb32@cornell.edu> 1250441599 -0700	commit: changed namespace of all generated modules to Bio::Chado instead of Chado at request of CPAN PAUSE maintainers
6cd881a3a88252334a20c43aba5f8f2105962116 782015187539654ff120350272534a41426fd748 Robert Buels <rmb32@cornell.edu> 1250441654 -0700	commit: corrected error in update_dbic_dump.pl POD
782015187539654ff120350272534a41426fd748 fe63bb7ab0d8525fb0f20801e29dd058b03c9d41 Robert Buels <rmb32@cornell.edu> 1250441805 -0700	commit: updated Build.PL for namespace change
fe63bb7ab0d8525fb0f20801e29dd058b03c9d41 10a69a6a616139cc1220eb8922b60cb3fcdcc1ff Robert Buels <rmb32@cornell.edu> 1250442117 -0700	commit: updated Bio::Chado::Schema POD for namespace change
10a69a6a616139cc1220eb8922b60cb3fcdcc1ff fd74d2a11a5b392f10521ff308e684d4926b22d6 Robert Buels <rmb32@cornell.edu> 1250465241 -0700	commit: updated Changes file for namespace change
fd74d2a11a5b392f10521ff308e684d4926b22d6 1943fc24b70d14dd3d3214ed83865024d814273b Robert Buels <rmb32@cornell.edu> 1250871753 -0700	commit: changed dist name to Bio-Chado-Schema
1943fc24b70d14dd3d3214ed83865024d814273b bdd8638c980aa46e7f3ff55ea64a244fda754f0c Robert Buels <rmb32@cornell.edu> 1250872446 -0700	commit: added dependency on a *recent* version of DBIx::Class
bdd8638c980aa46e7f3ff55ea64a244fda754f0c d602ca4bf05eb0575624d3fa5cc391188f73b636 Robert Buels <rmb32@cornell.edu> 1251562498 -0700	commit: first try at doing the whole schema dump in one shot, accomplishing module namespace separation by prefixing the table monikers with "ModuleName::". this *should* make DBICSL automatically find most of the inter-schema relationships
d602ca4bf05eb0575624d3fa5cc391188f73b636 46d15fda3ef3707794f61e8d7acc72dd93c2a856 Robert Buels <rmb32@cornell.edu> 1251562728 -0700	commit: added cell_line to blacklist, does not load cleanly
46d15fda3ef3707794f61e8d7acc72dd93c2a856 202b88c5303ffbb6b84845012df3fbdcb0decf01 Robert Buels <rmb32@cornell.edu> 1251563161 -0700	commit: added most of the inter-module schema relationships, thanks to the new design of the update script
202b88c5303ffbb6b84845012df3fbdcb0decf01 117b4260e24973edf90d45484006fd5dd096631e Robert Buels <rmb32@cornell.edu> 1251563393 -0700	commit: updated changelog and Build.PL for a 0.02 release
117b4260e24973edf90d45484006fd5dd096631e 79e65b8db8f00ecf92bacdf2e2232aa5735452ad Robert Buels <rmb32@cornell.edu> 1251572064 -0700	commit: bumped version to 0.021 because of a bad cpan upload
79e65b8db8f00ecf92bacdf2e2232aa5735452ad 215aa0328d36bd78e3c373bc2b7a05a9bd6cbbf3 Robert Buels <rmb32@cornell.edu> 1251574159 -0700	commit: another version bump to try another cpan upload
215aa0328d36bd78e3c373bc2b7a05a9bd6cbbf3 41d621331085efe0262f30b132de68a5afb4e4ae Robert Buels <rmb32@cornell.edu> 1251577141 -0700	commit: moved version number into Bio::Chado::Schema to appease cpan indexer
41d621331085efe0262f30b132de68a5afb4e4ae 519b58d18e30b9a2e2e685f68e9c32bfd7dcb0ca Robert Buels <rmb32@cornell.edu> 1251577313 -0700	commit: added trailing zeroes to version in Bio::Schema::Chado
519b58d18e30b9a2e2e685f68e9c32bfd7dcb0ca 2d42d91c4a2d0a1cc7345132a69521d95f332680 Robert Buels <rmb32@cornell.edu> 1251658856 -0700	commit: removed a few manually-added inter-module relationships that are now redundant, and were incorrect anyway. added a little bit of POD describing manually-added relationships that are still there. i intend to write a patch to DBICSL that will add POD generation, so that we can have some documentation of the rest of the columns
2d42d91c4a2d0a1cc7345132a69521d95f332680 92c4d86d497c566db78da1c8205acbcfd4a84c12 Robert Buels <rmb32@cornell.edu> 1251659222 -0700	commit: version bump to 0.031
92c4d86d497c566db78da1c8205acbcfd4a84c12 819aee2334f5baed9c982cf8c7ed9a051f714040 Robert Buels <rmb32@cornell.edu> 1251732149 -0700	commit: cleaned up old unused comment
819aee2334f5baed9c982cf8c7ed9a051f714040 0dd49fff8dc8d3792ef8e56c0820650369621761 Robert Buels <rmb32@cornell.edu> 1251732361 -0700	commit: removed cell_line blacklist from maint script
0dd49fff8dc8d3792ef8e56c0820650369621761 cdcae28ae3d2c6b9d3f59384f7123d97e785ca8a Robert Buels <rmb32@cornell.edu> 1251732453 -0700	commit: updated modules to include the new cell_line module
cdcae28ae3d2c6b9d3f59384f7123d97e785ca8a 607db23d192c1e91efae7307592325a900b00912 Robert Buels <rmb32@cornell.edu> 1251733456 -0700	commit: bumped version to 0.04, updated changelog
607db23d192c1e91efae7307592325a900b00912 aa38488454612819551a599dd65b63a4547c9f48 Robert Buels <rmb32@cornell.edu> 1251734213 -0700	commit: bugfix to updater, was erroneously reporting "missing" errors for module names along with source files
aa38488454612819551a599dd65b63a4547c9f48 086512164d746fad2cb1a749b90da3f6f3576e9d Robert Buels <rmb32@cornell.edu> 1251734601 -0700	commit: in updater script, improved display of calculated module load order
086512164d746fad2cb1a749b90da3f6f3576e9d 9efc5f7753a575c15052427b9f06e5496f5f2f0d Robert Buels <rmb32@cornell.edu> 1251849883 -0700	commit: rewrote feature obj create_featureprops method. much better now. adds a dep on Carp
9efc5f7753a575c15052427b9f06e5496f5f2f0d c6da1b379fce27850098b88934be6c845a00af6e Robert Buels <rmb32@cornell.edu> 1251850013 -0700	commit: oops, forgot the use carp
c6da1b379fce27850098b88934be6c845a00af6e d7b80afaeeb71718a54dcc5bb51d6362cba9e5af Robert Buels <rmb32@cornell.edu> 1251850051 -0700	commit: added feature::search_featureprops, plus experimental Bio::PrimarySeqI support for feature
d7b80afaeeb71718a54dcc5bb51d6362cba9e5af c2c25da1d750ec3689c0da0bbd70eae0a0194612 Robert Buels <rmb32@cornell.edu> 1252941551 -0700	commit: added dependency on latest version of DBIx::Class, which fixed a bug with sequence discovery under postgres
c2c25da1d750ec3689c0da0bbd70eae0a0194612 b192e66f84ad5e760728c24dfaf6d244127e10a5 Robert Buels <rmb32@cornell.edu> 1254510131 -0700	commit: bugfix to dbxref creation in Sequence::Feature::create_featureprops. was not searching for the most recent version of dbxrefs
b192e66f84ad5e760728c24dfaf6d244127e10a5 b0ffd4d95dd4ba8da23e701a9410b201577b4cdf Robert Buels <rmb32@cornell.edu> 1254528526 -0700	merge nmenda_int: Fast forward
b0ffd4d95dd4ba8da23e701a9410b201577b4cdf 37b0217106004ee9c920dfd42bb6bb47a55c3578 Robert Buels <rmb32@cornell.edu> 1254528978 -0700	commit: added naama to contributors list
37b0217106004ee9c920dfd42bb6bb47a55c3578 edf2d7307916e9116fec4f2663b1ad54723742e2 Robert Buels <rmb32@cornell.edu> 1254848156 -0700	commit: removed addition of explicit column to General::Dbxref
edf2d7307916e9116fec4f2663b1ad54723742e2 e7916df582dfc473483834713414614845562784 Robert Buels <rmb32@cornell.edu> 1254848698 -0700	commit: some bugfixes to Util module. really really need to get a test suite going
e7916df582dfc473483834713414614845562784 757a107ee7659303871a0e530353233df63b5d00 Robert Buels <rmb32@cornell.edu> 1254849172 -0700	commit: added a lot of many_to_many relations to General::Dbxref, with the _mm prefix to set of the fact that they are many_to_many (which are not exactly full-fledged DBIC relationships), and to avoid collisions with some one-to-many relationships of the same name
757a107ee7659303871a0e530353233df63b5d00 22a6b3530cff83e9b09780c2a9a638a21ada9deb Robert Buels <rmb32@cornell.edu> 1254849290 -0700	commit: fixed small POD error in sequence feature
22a6b3530cff83e9b09780c2a9a638a21ada9deb 33a294e5eaad6ea65e11fc167fdae3110fc98682 Robert Buels <rmb32@cornell.edu> 1254849357 -0700	commit: corrected name of the create_properties util function
33a294e5eaad6ea65e11fc167fdae3110fc98682 fbe756b991c9a628339e4f33a79d64188ec7cdd1 Robert Buels <rmb32@cornell.edu> 1254853108 -0700	commit: tweaked contributor list POD in main schema class
fbe756b991c9a628339e4f33a79d64188ec7cdd1 ad0083e6bcbd435767dbe18b610a6d9af27c66b3 Robert Buels <rmb32@cornell.edu> 1254853137 -0700	commit: added code to enable skipping some modules in the BCS namespace
ad0083e6bcbd435767dbe18b610a6d9af27c66b3 6d7572594697b81d569e88fc2e6db1b8f1b7fc63 Robert Buels <rmb32@cornell.edu> 1256226226 -0700	commit: removed erroneously-added relationship in Cv::Cvterm
6d7572594697b81d569e88fc2e6db1b8f1b7fc63 fe9d88eaebb370b6b9827590fe6171f534fd32b5 Robert Buels <rmb32@cornell.edu> 1256578870 -0700	commit: moved repository URL to standard naming scheme
fe9d88eaebb370b6b9827590fe6171f534fd32b5 be488e96b1e22737bb797ce883a883794e7c05ba Robert Buels <rmb32@cornell.edu> 1256920297 -0700	commit: added missing dependency on bioperl, bumped version to 0.41
be488e96b1e22737bb797ce883a883794e7c05ba 421e5c21d7b79c0518327bde982442a40377b5bc Robert Buels <rmb32@cornell.edu> 1257275867 -0800	commit: moved Util.pm functions into Schema.pm file to prevent them being found by Module::Find
421e5c21d7b79c0518327bde982442a40377b5bc f4bd5d5327378790d50fc9ea7b84f43fb03a5ad3 Robert Buels <rmb32@cornell.edu> 1257278254 -0800	commit: stray whitespace
f4bd5d5327378790d50fc9ea7b84f43fb03a5ad3 0b71ee2229ddc090cd1b5ae9c726d53687271453 Robert Buels <rmb32@cornell.edu> 1257278357 -0800	commit: oops
0b71ee2229ddc090cd1b5ae9c726d53687271453 e4aeeb0baf130c280e8259d1ffab8a18d05dbf51 Robert Buels <rmb32@cornell.edu> 1257278396 -0800	rebase -i (finish): refs/heads/master onto be488e9)
e4aeeb0baf130c280e8259d1ffab8a18d05dbf51 b591b8f1abb429c09e749ee7632b69d4cd1a85d8 Robert Buels <rmb32@cornell.edu> 1257278856 -0800	commit: updated contributor list
b591b8f1abb429c09e749ee7632b69d4cd1a85d8 8495bf2d0eb9f1a75b46e4110030147c90162bf8 Robert Buels <rmb32@cornell.edu> 1257278907 -0800	commit: updated Changes for cpan release
8495bf2d0eb9f1a75b46e4110030147c90162bf8 2483a04e8f2aa6e8ba13cd27c2409006b9c842db Robert Buels <rmb32@cornell.edu> 1257279318 -0800	commit: oops, Util.pod was in the wrong place
2483a04e8f2aa6e8ba13cd27c2409006b9c842db a85150347ff595954a4e31d663c80333f409b248 Robert Buels <rmb32@cornell.edu> 1257279582 -0800	commit: bumping version number just to be safe
a85150347ff595954a4e31d663c80333f409b248 f0f38cc01558ed12e59e8aae1f5678f8f6b393b4 Robert Buels <rmb32@cornell.edu> 1257279700 -0800	commit: updated changelog for version 0.043
f0f38cc01558ed12e59e8aae1f5678f8f6b393b4 6cd184b648fe7609c0443f0ad2077028103e512a Robert Buels <rmb32@cornell.edu> 1259796874 -0800	commit: no longer directly depends on Module::Find
6cd184b648fe7609c0443f0ad2077028103e512a 5c7bb74ea3119ba820571f529aad4aedc6e28ce3 Robert Buels <rmb32@cornell.edu> 1262281592 -0800	commit: added some more tests, including test for join through a has_many with a name longer than 30 chars (test for cybersiddhu\'s problem on Oracle)
5c7bb74ea3119ba820571f529aad4aedc6e28ce3 38543713c14ee2dd996d1ec823b300252c3c55a8 Robert Buels <rmb32@cornell.edu> 1262295283 -0800	commit: updated generator script to pull chado from svn (instead of old cvs), and also overwrite external modifications and ignore any installed copies of BCS
38543713c14ee2dd996d1ec823b300252c3c55a8 7c0a056b6b59627d539a5427292814d4f40a26b2 Robert Buels <rmb32@cornell.edu> 1262374609 -0800	commit: more tweaks to updater script, able to remove stuff from blacklist if we make sure to also drop the schemas they create
7c0a056b6b59627d539a5427292814d4f40a26b2 611f9dcb2810d65b8d14852aa246919c40390570 Robert Buels <rmb32@cornell.edu> 1262375108 -0800	commit: added disabling of cascade_delete and cascade_copy for generated rels in call to schema loader
611f9dcb2810d65b8d14852aa246919c40390570 eb94492cccca5356d577c73eecd6b335e6d2e67e Robert Buels <rmb32@cornell.edu> 1262375664 -0800	commit: added naming => current to schema loader invocation just to make sure
eb94492cccca5356d577c73eecd6b335e6d2e67e b3f79d0fa2ff2b4e6b568a7bf58a025a001db2b0 Robert Buels <rmb32@cornell.edu> 1262381229 -0800	commit: updated schema with new version of DBICSL, turning off cascade_delete and cascade_copy, and adding generated POD
b3f79d0fa2ff2b4e6b568a7bf58a025a001db2b0 5f83ff2fff7fa825857165fe79ff03c4a8e6061d Robert Buels <rmb32@cornell.edu> 1262381291 -0800	commit: updated changelog
5f83ff2fff7fa825857165fe79ff03c4a8e6061d 8766738c03a21b52853dc262f09f412b80bbaa5f Robert Buels <rmb32@cornell.edu> 1262382441 -0800	commit: added attributes of each accessor to POD
8766738c03a21b52853dc262f09f412b80bbaa5f b3ec2be5be362906446b0616cbabf436262fb5a9 Robert Buels <rmb32@cornell.edu> 1262383628 -0800	commit: bumped version number
b3ec2be5be362906446b0616cbabf436262fb5a9 8a3751a5cd66d7dbef0cda56111f12de0e7e2e55 Robert Buels <rmb32@cornell.edu> 1262384322 -0800	commit: tweaked Sequence::Feature POD to be same format as the DBICSL-generated POD
8a3751a5cd66d7dbef0cda56111f12de0e7e2e55 7fd1336c216e16dc5e6b12cab05b92aafeba8e85 Robert Buels <rmb32@cornell.edu> 1262550379 -0800	commit: oops, forgot to update test coutns
7fd1336c216e16dc5e6b12cab05b92aafeba8e85 d63828034fcb7c6d2e1cf65af2ba32489874b933 Robert Buels <rmb32@cornell.edu> 1262550385 -0800	commit (amend): oops, forgot to update test counts
d63828034fcb7c6d2e1cf65af2ba32489874b933 ac9cff35c304451a49d69234d5d547d5f7a18c4b Robert Buels <rmb32@cornell.edu> 1262550420 -0800	commit: tiny version bump
ac9cff35c304451a49d69234d5d547d5f7a18c4b 2dfba1cd9602396bac15c6db6e526d62e2ac0b2f Robert Buels <rmb32@cornell.edu> 1262550504 -0800	commit: updated changelog
2dfba1cd9602396bac15c6db6e526d62e2ac0b2f 9e7cbca3b7a21f6bcc40f7ebbb3584ec7959a885 Robert Buels <rmb32@cornell.edu> 1262550554 -0800	commit: perltidy on Build.PL
9e7cbca3b7a21f6bcc40f7ebbb3584ec7959a885 7fe6f03601538543d77917719df3e3b324f36ea8 Robert Buels <rmb32@cornell.edu> 1263456563 -0800	commit: updated and expanded intro-talk slides for January 2010 GMOD meeting
7fe6f03601538543d77917719df3e3b324f36ea8 577608bce19bdb115f082053ef3ed05520664c58 Robert Buels <rmb32@cornell.edu> 1263516941 -0800	commit: more talk updates
577608bce19bdb115f082053ef3ed05520664c58 8f452fa1b67df66da54de2e0b8812bf01777e921 Robert Buels <rmb32@cornell.edu> 1263581581 -0800	commit: maint script now generates POD giving a list of all the classes in each chado module
8f452fa1b67df66da54de2e0b8812bf01777e921 191b63138f1daec100f2748174c35bc8f1aaf035 Robert Buels <rmb32@cornell.edu> 1263581620 -0800	commit: added per-chado-module lists of classes
191b63138f1daec100f2748174c35bc8f1aaf035 f179c8729de06fb859a06c44be5321331ea706ac Robert Buels <rmb32@cornell.edu> 1263582463 -0800	commit: maint script pod tweak
f179c8729de06fb859a06c44be5321331ea706ac f12a3930d8edac7fa5b8cdda25004697b872468a Robert Buels <rmb32@cornell.edu> 1263584456 -0800	commit: tweaked Bio::Chado::Schema.pm pod, added markers for auto-generated chado module links
f12a3930d8edac7fa5b8cdda25004697b872468a b9c6fc8f7905cba35d172dc4dd9c4be998c54001 Robert Buels <rmb32@cornell.edu> 1263586456 -0800	commit: more POD work, added generated list (with links) of chado modules to Schema.pm
b9c6fc8f7905cba35d172dc4dd9c4be998c54001 9c394826ffba822def2c81236408314957185ec2 Robert Buels <rmb32@cornell.edu> 1263586749 -0800	commit: updated changelog, bumped version number to 0.055
9c394826ffba822def2c81236408314957185ec2 5f71957865f14fdf363986f2180725e2b749945a Robert Buels <rmb32@cornell.edu> 1264102783 -0800	commit: tweaked per-module POD for better cpan indexing
5f71957865f14fdf363986f2180725e2b749945a aa34f9f02ebe6a20ea62832b762c8ca6b4002a1f Robert Buels <rmb32@cornell.edu> 1264448659 -0800	commit: tweaked POD generation to hide the template in the updater script from the CPAN indexer, and also clean up some stray whitespace in the module descriptions coming from the chado module metadata
aa34f9f02ebe6a20ea62832b762c8ca6b4002a1f 7ea9291641ef2804e3fee62d2deaa149453ee75a Robert Buels <rmb32@cornell.edu> 1264560065 -0800	commit: documented some of the Bio::PrimarySeqI functions in Sequence::Feature
7ea9291641ef2804e3fee62d2deaa149453ee75a 6bfd6c63704b8503b5af3ec4380eb26df11cce33 Robert Buels <rmb32@cornell.edu> 1264560183 -0800	commit (amend): documented some of the Bio::PrimarySeqI functions in Sequence::Feature, added some tests for them
6bfd6c63704b8503b5af3ec4380eb26df11cce33 70c8439a56c38417c1c1cdb4e9fc798173ede3a7 Robert Buels <rmb32@cornell.edu> 1264576184 -0800	commit: corrected feature test count
70c8439a56c38417c1c1cdb4e9fc798173ede3a7 b67404103dde598b9fb379dd9e06df738666f3b2 Robert Buels <rmb32@cornell.edu> 1264576256 -0800	commit (merge): Merge branch 'nmenda_int'
b67404103dde598b9fb379dd9e06df738666f3b2 7c483f790f32ef227630f24aafea51c214add13c Robert Buels <rmb32@cornell.edu> 1264577057 -0800	commit: pod correction in new create_with()
7c483f790f32ef227630f24aafea51c214add13c f8907753120103837c0ba7b15222a91bbc088aef Robert Buels <rmb32@cornell.edu> 1264577113 -0800	commit: whitespace cleanup
f8907753120103837c0ba7b15222a91bbc088aef 4e72969f4dc2946e9d540419d3308b179358079b Robert Buels <rmb32@cornell.edu> 1264577137 -0800	rebase -i (finish): refs/heads/master onto b674041)
4e72969f4dc2946e9d540419d3308b179358079b d2edf2828f36fc908cfb8219db20f4ed2417b186 Robert Buels <rmb32@cornell.edu> 1264578777 -0800	commit: corrected by erroneous use of transactions in cvterm test
d2edf2828f36fc908cfb8219db20f4ed2417b186 4d905f0d5007c769c3baa49655d400ec0d4bf82b Robert Buels <rmb32@cornell.edu> 1264579271 -0800	commit: tweaked chado module list generation, removed custom POD tag that search.cpan.org is displaying
4d905f0d5007c769c3baa49655d400ec0d4bf82b ea61b88b26dba0b5f94847716203fc7c663dd175 Robert Buels <rmb32@cornell.edu> 1265942099 -0800	commit: changed testing DSN env variable to BCS_TEST_DSN
ea61b88b26dba0b5f94847716203fc7c663dd175 7021e6248e92e63d6bc1beacb80948e5c1f75af6 Robert Buels <rmb32@cornell.edu> 1265942104 -0800	merge nmenda_int: Merge made by recursive.
7021e6248e92e63d6bc1beacb80948e5c1f75af6 4cc9fa9b81469434342805b0b67e37a7c56a434a Robert Buels <rmb32@cornell.edu> 1265942276 -0800	commit: simplified Changes file format
4cc9fa9b81469434342805b0b67e37a7c56a434a 2e7b9ae780d5b043722d370ea9c2514eefbc306e Robert Buels <rmb32@cornell.edu> 1266530075 -0800	commit: stripped _id suffixes from more relationship names, preserving inflections
2e7b9ae780d5b043722d370ea9c2514eefbc306e 1d1119bd8ccc2dba8a89430f964bcceec6123113 Robert Buels <rmb32@cornell.edu> 1267401394 -0800	commit: bumped version to 0.05700
