X! TANDEM API Documentation Project - UML diagrams

The current documentation for X! TANDEM is in the form of a set of UML diagrams illustrating how the various algorithms in X! TANDEM work in detail. For all other details, please see the documentation in the source code. A state diagram showing how X! TANDEM works. An activity diagram of the how information is loaded. An activity diagram of how scoring is done. A state diagram of the scoring mechanism. A state diagram of how peptide sequences are created from protein sequences. A state diagram of how protein sequences are loaded from a file. A state diagram of how spectra are evaluated by peptide mass. A class diagram of the loadmspectrum class. A class diagram of the mprocess class. A class diagram of the mreport class. A class diagram of the mscore class. A class diagram of the msequence class. A class diagram of the mspectrum class. Is there something you would like to see included, or documentation that you would like to contribute? Please let use know - api@thegpm.org. X! TANDEM API description project