<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
 <class>MassChroqRunDialog</class>
 <widget class="QWidget" name="MassChroqRunDialog">
  <property name="geometry">
   <rect>
    <x>0</x>
    <y>0</y>
    <width>652</width>
    <height>560</height>
   </rect>
  </property>
  <property name="windowTitle">
   <string>MassChroQ parameters</string>
  </property>
  <layout class="QGridLayout" name="gridLayout">
   <item row="1" column="0">
    <layout class="QHBoxLayout" name="horizontalLayout">
     <item>
      <widget class="QLabel" name="label_8">
       <property name="text">
        <string>Results format</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QComboBox" name="outputFileFormatComboBox">
       <item>
        <property name="text">
         <string extracomment="Open Document Spreadsheet">ODS</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string extracomment="Tabulated Separated Values (text files in a directory)">TSV</string>
        </property>
       </item>
      </widget>
     </item>
     <item>
      <widget class="QRadioButton" name="compar_radioButton">
       <property name="text">
        <string>Compar file</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="Line" name="line">
       <property name="orientation">
        <enum>Qt::Vertical</enum>
       </property>
      </widget>
     </item>
     <item>
      <spacer name="horizontalSpacer">
       <property name="orientation">
        <enum>Qt::Horizontal</enum>
       </property>
       <property name="sizeHint" stdset="0">
        <size>
         <width>40</width>
         <height>20</height>
        </size>
       </property>
      </spacer>
     </item>
     <item>
      <widget class="QPushButton" name="cancelButton">
       <property name="text">
        <string>Cancel</string>
       </property>
       <property name="icon">
        <iconset theme="cancel">
         <normaloff>.</normaloff>.</iconset>
       </property>
       <property name="autoDefault">
        <bool>false</bool>
       </property>
       <property name="default">
        <bool>false</bool>
       </property>
       <property name="flat">
        <bool>false</bool>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="SaveMCQMLButton">
       <property name="text">
        <string>Save File</string>
       </property>
       <property name="icon">
        <iconset theme="document-save">
         <normaloff>.</normaloff>.</iconset>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="runMCQButton">
       <property name="text">
        <string>Run MassChroQ</string>
       </property>
       <property name="icon">
        <iconset theme="system-run">
         <normaloff>.</normaloff>.</iconset>
       </property>
      </widget>
     </item>
    </layout>
   </item>
   <item row="0" column="0">
    <widget class="QTabWidget" name="tabWidget">
     <property name="currentIndex">
      <number>0</number>
     </property>
     <widget class="QWidget" name="tab">
      <attribute name="title">
       <string>&amp;Group summary</string>
      </attribute>
      <layout class="QVBoxLayout" name="verticalLayout_12">
       <item>
        <layout class="QHBoxLayout" name="horizontalLayout_6" stretch="1,2">
         <property name="spacing">
          <number>6</number>
         </property>
         <property name="sizeConstraint">
          <enum>QLayout::SetDefaultConstraint</enum>
         </property>
         <item>
          <layout class="QVBoxLayout" name="verticalLayout_13">
           <item>
            <widget class="QListView" name="group_listView">
             <property name="toolTip">
              <string>Check which groups will be export in the masschroqml file</string>
             </property>
            </widget>
           </item>
           <item>
            <layout class="QHBoxLayout" name="horizontalLayout_12">
             <item>
              <widget class="QLabel" name="label_msrun_not_found">
               <property name="text">
                <string>TextLabel</string>
               </property>
              </widget>
             </item>
             <item>
              <widget class="QToolButton" name="toolButton_2">
               <property name="text">
                <string/>
               </property>
               <property name="icon">
                <iconset resource="../../xtpcpp.qrc">
                 <normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</iconset>
               </property>
               <property name="autoRaise">
                <bool>true</bool>
               </property>
              </widget>
             </item>
            </layout>
           </item>
           <item>
            <layout class="QHBoxLayout" name="horizontalLayout_11">
             <item>
              <widget class="QPushButton" name="checkMsrunFilePathButton">
               <property name="text">
                <string>Check Ms run file path</string>
               </property>
              </widget>
             </item>
             <item>
              <widget class="QLabel" name="label_check">
               <property name="text">
                <string/>
               </property>
               <property name="pixmap">
                <pixmap resource="../../xtpcpp.qrc">:/icons/resources/icons/apache/firefox/check_icon.svg</pixmap>
               </property>
               <property name="scaledContents">
                <bool>false</bool>
               </property>
              </widget>
             </item>
            </layout>
           </item>
          </layout>
         </item>
         <item>
          <layout class="QVBoxLayout" name="verticalLayout_14">
           <item>
            <widget class="QGroupBox" name="groupBox_5">
             <property name="title">
              <string>Ms runs in the selected group</string>
             </property>
             <layout class="QHBoxLayout" name="horizontalLayout_9">
              <item>
               <layout class="QVBoxLayout" name="verticalLayout_15">
                <item>
                 <widget class="QListWidget" name="listWidget"/>
                </item>
                <item>
                 <widget class="QLabel" name="label_7">
                  <property name="text">
                   <string>Reference:</string>
                  </property>
                 </widget>
                </item>
                <item>
                 <layout class="QHBoxLayout" name="horizontalLayout_10" stretch="3,1">
                  <item>
                   <widget class="QComboBox" name="msrun_list_combo_box"/>
                  </item>
                  <item>
                   <widget class="QPushButton" name="pushButton">
                    <property name="text">
                     <string>Find Best</string>
                    </property>
                   </widget>
                  </item>
                 </layout>
                </item>
               </layout>
              </item>
             </layout>
            </widget>
           </item>
          </layout>
         </item>
        </layout>
       </item>
      </layout>
     </widget>
     <widget class="QWidget" name="alignmentTab">
      <attribute name="title">
       <string>Alignment</string>
      </attribute>
      <layout class="QVBoxLayout" name="verticalLayout_5">
       <item>
        <widget class="QGroupBox" name="timeCorrectionGroupBox">
         <property name="title">
          <string>Store time corrections in director&amp;y</string>
         </property>
         <property name="checkable">
          <bool>true</bool>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout_6">
          <item>
           <layout class="QHBoxLayout" name="horizontalLayout_4">
            <item>
             <widget class="QLineEdit" name="timeCorrectionDirectoryEdit"/>
            </item>
           </layout>
          </item>
         </layout>
        </widget>
       </item>
       <item>
        <widget class="QGroupBox" name="groupBox">
         <property name="title">
          <string>MS2 alignment parameters</string>
         </property>
         <layout class="QFormLayout" name="formLayout">
          <item row="0" column="0">
           <widget class="QLabel" name="label_2">
            <property name="text">
             <string>MS2 tendency</string>
            </property>
           </widget>
          </item>
          <item row="1" column="0">
           <widget class="QLabel" name="label_3">
            <property name="text">
             <string>MS2 smoothing</string>
            </property>
           </widget>
          </item>
          <item row="2" column="0">
           <widget class="QLabel" name="label_4">
            <property name="text">
             <string>MS1 smoothing</string>
            </property>
           </widget>
          </item>
          <item row="0" column="1">
           <widget class="QSpinBox" name="ms2TendencySpinBox"/>
          </item>
          <item row="1" column="1">
           <widget class="QSpinBox" name="ms2SmoothingSpinBox"/>
          </item>
          <item row="2" column="1">
           <widget class="QSpinBox" name="ms1SmoothingSpinBox"/>
          </item>
         </layout>
        </widget>
       </item>
       <item>
        <spacer name="verticalSpacer_2">
         <property name="orientation">
          <enum>Qt::Vertical</enum>
         </property>
         <property name="sizeHint" stdset="0">
          <size>
           <width>20</width>
           <height>40</height>
          </size>
         </property>
        </spacer>
       </item>
      </layout>
     </widget>
     <widget class="QWidget" name="xicTab">
      <attribute name="title">
       <string>Peak quantification</string>
      </attribute>
      <layout class="QVBoxLayout" name="verticalLayout_8">
       <item>
        <widget class="QGroupBox" name="groupBox_3">
         <property name="title">
          <string>XIC extraction parameters</string>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout_10">
          <item>
           <layout class="QHBoxLayout" name="horizontalLayout_7">
            <item>
             <widget class="QLabel" name="label_5">
              <property name="text">
               <string>XIC range</string>
              </property>
             </widget>
            </item>
            <item>
             <widget class="pappso::PrecisionWidget" name="xicRangeWidget" native="true">
              <property name="minimumSize">
               <size>
                <width>2</width>
                <height>2</height>
               </size>
              </property>
              <property name="baseSize">
               <size>
                <width>0</width>
                <height>0</height>
               </size>
              </property>
             </widget>
            </item>
           </layout>
          </item>
          <item>
           <layout class="QHBoxLayout" name="horizontalLayout_8">
            <item>
             <widget class="QLabel" name="label_6">
              <property name="text">
               <string>inside range, take the</string>
              </property>
             </widget>
            </item>
            <item>
             <widget class="XicExtractionMethodWidget" name="xic_extraction_method_widget" native="true"/>
            </item>
           </layout>
          </item>
         </layout>
        </widget>
       </item>
       <item>
        <widget class="QGroupBox" name="groupBox_2">
         <property name="title">
          <string>Peak detection parameters</string>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout_9">
          <item>
           <widget class="ZivyWidget" name="zivyParamWidget" native="true"/>
          </item>
         </layout>
        </widget>
       </item>
       <item>
        <spacer name="verticalSpacer_4">
         <property name="orientation">
          <enum>Qt::Vertical</enum>
         </property>
         <property name="sizeHint" stdset="0">
          <size>
           <width>20</width>
           <height>40</height>
          </size>
         </property>
        </spacer>
       </item>
      </layout>
     </widget>
     <widget class="QWidget" name="masschroq_tab">
      <attribute name="title">
       <string>MassChroQ</string>
      </attribute>
      <layout class="QGridLayout" name="gridLayout_2">
       <item row="1" column="0">
        <widget class="QGroupBox" name="groupBox_6">
         <property name="title">
          <string>MassChroQ parameters</string>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout">
          <item>
           <layout class="QFormLayout" name="formLayout_2">
            <item row="0" column="0">
             <widget class="QLabel" name="label">
              <property name="text">
               <string>Number of CPUs</string>
              </property>
             </widget>
            </item>
            <item row="1" column="0">
             <widget class="QLabel" name="label_9">
              <property name="text">
               <string>Temporary directory</string>
              </property>
             </widget>
            </item>
            <item row="1" column="1">
             <layout class="QHBoxLayout" name="horizontalLayout_2">
              <item>
               <widget class="QLineEdit" name="temporary_directory_line">
                <property name="enabled">
                 <bool>true</bool>
                </property>
                <property name="placeholderText">
                 <string>Select the temporary dir (default: /tmp/)</string>
                </property>
               </widget>
              </item>
              <item>
               <widget class="QToolButton" name="temp_dir_button">
                <property name="enabled">
                 <bool>true</bool>
                </property>
                <property name="text">
                 <string>...</string>
                </property>
                <property name="icon">
                 <iconset resource="../../xtpcpp.qrc">
                  <normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</iconset>
                </property>
                <property name="iconSize">
                 <size>
                  <width>24</width>
                  <height>24</height>
                 </size>
                </property>
                <property name="autoRaise">
                 <bool>true</bool>
                </property>
               </widget>
              </item>
             </layout>
            </item>
            <item row="0" column="1">
             <widget class="QSpinBox" name="cpu_spinbox">
              <property name="minimum">
               <number>1</number>
              </property>
             </widget>
            </item>
           </layout>
          </item>
          <item>
           <widget class="QCheckBox" name="temp_checkbox">
            <property name="text">
             <string>Use the temporar&amp;y directory to store detected peaks</string>
            </property>
           </widget>
          </item>
          <item>
           <widget class="QCheckBox" name="peptide_checkbox">
            <property name="text">
             <string>perform peptide &amp;text file parsing only</string>
            </property>
           </widget>
          </item>
         </layout>
        </widget>
       </item>
       <item row="0" column="0">
        <widget class="QGroupBox" name="groupBox_4">
         <property name="title">
          <string>MassChroQ path</string>
         </property>
         <layout class="QVBoxLayout" name="verticalLayout_2">
          <item>
           <layout class="QHBoxLayout" name="horizontalLayout_3">
            <item>
             <widget class="QLineEdit" name="masschroq_bin_path_line">
              <property name="placeholderText">
               <string>Select the MassChroQ binary path</string>
              </property>
             </widget>
            </item>
            <item>
             <widget class="QToolButton" name="masschroq_bin_path_button">
              <property name="text">
               <string>...</string>
              </property>
              <property name="icon">
               <iconset resource="../../xtpcpp.qrc">
                <normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</normaloff>:/icons/resources/icons/apache/firefox/folder_icon.svg</iconset>
              </property>
              <property name="iconSize">
               <size>
                <width>24</width>
                <height>24</height>
               </size>
              </property>
              <property name="autoRaise">
               <bool>true</bool>
              </property>
             </widget>
            </item>
           </layout>
          </item>
          <item>
           <widget class="QGroupBox" name="use_ht_condor_group">
            <property name="title">
             <string>Run MassC&amp;hroQ through Condor</string>
            </property>
            <property name="checkable">
             <bool>true</bool>
            </property>
            <property name="checked">
             <bool>false</bool>
            </property>
            <layout class="QHBoxLayout" name="horizontalLayout_5">
             <item>
              <widget class="QLabel" name="label_10">
               <property name="enabled">
                <bool>true</bool>
               </property>
               <property name="text">
                <string>MassChroQ memory requirement (MB)</string>
               </property>
              </widget>
             </item>
             <item>
              <widget class="QSpinBox" name="ht_condor_memory_spin">
               <property name="enabled">
                <bool>true</bool>
               </property>
               <property name="maximum">
                <number>100000</number>
               </property>
               <property name="singleStep">
                <number>500</number>
               </property>
               <property name="value">
                <number>5000</number>
               </property>
              </widget>
             </item>
            </layout>
           </widget>
          </item>
         </layout>
        </widget>
       </item>
       <item row="2" column="0">
        <spacer name="verticalSpacer">
         <property name="orientation">
          <enum>Qt::Vertical</enum>
         </property>
         <property name="sizeHint" stdset="0">
          <size>
           <width>20</width>
           <height>40</height>
          </size>
         </property>
        </spacer>
       </item>
      </layout>
     </widget>
    </widget>
   </item>
  </layout>
 </widget>
 <customwidgets>
  <customwidget>
   <class>ZivyWidget</class>
   <extends>QWidget</extends>
   <header>./gui/xic_view/xic_widgets/zivywidget.h</header>
   <container>1</container>
  </customwidget>
  <customwidget>
   <class>pappso::PrecisionWidget</class>
   <extends>QWidget</extends>
   <header>pappsomspp/widget/precisionwidget/precisionwidget.h</header>
   <container>1</container>
  </customwidget>
  <customwidget>
   <class>XicExtractionMethodWidget</class>
   <extends>QWidget</extends>
   <header>gui/widgets/xic_extraction_method_widget/xicextractionmethodwidget.h</header>
   <container>1</container>
  </customwidget>
 </customwidgets>
 <resources>
  <include location="../../xtpcpp.qrc"/>
  <include location="../../xtpcpp.qrc"/>
 </resources>
 <connections>
  <connection>
   <sender>group_listView</sender>
   <signal>clicked(QModelIndex)</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doShowMsRunsInAlignmentGroup(QModelIndex)</slot>
   <hints>
    <hint type="sourcelabel">
     <x>69</x>
     <y>92</y>
    </hint>
    <hint type="destinationlabel">
     <x>651</x>
     <y>192</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>pushButton</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doFindBestMsrunForAlignment()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>600</x>
     <y>488</y>
    </hint>
    <hint type="destinationlabel">
     <x>651</x>
     <y>433</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>checkMsrunFilePathButton</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doCheckMsrunFilepath()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>51</x>
     <y>501</y>
    </hint>
    <hint type="destinationlabel">
     <x>120</x>
     <y>559</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>toolButton_2</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doBrowseMsrunDirectory()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>219</x>
     <y>466</y>
    </hint>
    <hint type="destinationlabel">
     <x>651</x>
     <y>386</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>msrun_list_combo_box</sender>
   <signal>activated(int)</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doUpdateReferenceInSelectedGroup(int)</slot>
   <hints>
    <hint type="sourcelabel">
     <x>313</x>
     <y>488</y>
    </hint>
    <hint type="destinationlabel">
     <x>651</x>
     <y>444</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>runMCQButton</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doRunMassChroQ()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>576</x>
     <y>529</y>
    </hint>
    <hint type="destinationlabel">
     <x>850</x>
     <y>541</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>cancelButton</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>reject()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>372</x>
     <y>537</y>
    </hint>
    <hint type="destinationlabel">
     <x>700</x>
     <y>554</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>SaveMCQMLButton</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doSaveMassChroQML()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>450</x>
     <y>535</y>
    </hint>
    <hint type="destinationlabel">
     <x>798</x>
     <y>512</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>masschroq_bin_path_button</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doBrowseMassChroQBin()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>618</x>
     <y>141</y>
    </hint>
    <hint type="destinationlabel">
     <x>761</x>
     <y>100</y>
    </hint>
   </hints>
  </connection>
  <connection>
   <sender>temp_dir_button</sender>
   <signal>clicked()</signal>
   <receiver>MassChroqRunDialog</receiver>
   <slot>doBrowseTempDir()</slot>
   <hints>
    <hint type="sourcelabel">
     <x>617</x>
     <y>380</y>
    </hint>
    <hint type="destinationlabel">
     <x>751</x>
     <y>221</y>
    </hint>
   </hints>
  </connection>
 </connections>
 <slots>
  <slot>reject()</slot>
  <slot>accept()</slot>
  <slot>doCheckMsrunFilepath()</slot>
  <slot>doBrowseMsrunDirectory()</slot>
  <slot>doFindBestMsrunForAlignment()</slot>
  <slot>doShowMsRunsInAlignmentGroup(QModelIndex)</slot>
  <slot>doUpdateReferenceInSelectedGroup(int)</slot>
  <slot>doRunMassChroQ()</slot>
  <slot>doSaveMassChroQML()</slot>
  <slot>doBrowseMassChroQBin()</slot>
  <slot>doBrowseTempDir()</slot>
 </slots>
</ui>
