fitevd
Usage: fitevd <q> [options]
Description:
fitevd fits an extreme value distribution to a set of score-length paris
with a query length of <q>.
Input:
- Reads white-space separated score-length pairs from
stdin
Output:
- Writes the EVD parameters to
stdout.
Options:
-d <smin> <smax>- Print length vs p-value for<smin> <= score <= <smax>.-h <H>- Initial value of H. Default value: 1.0.-ilh <ilh>- Maximum iterations in outer L-H loop. Default value: 10.-inr <inr>- Maximum iterations in inner N-R loop. Default value: 20.-lr <lr>- Minimum ration of shortest to longest in group. Default value: 1.50.-p <n>- Print p-values. Default value: off.-r <n>- use<n>randomly selected scores. Default value: all.-s <s>- Size of length groups. Default value: 10000.-t- Turn on debug tracing. Default value: off.
Bugs: None known.
Author: Tim Bailey