fasta-get-markov
Usage: fasta-get-markov <q> [options]
Description:
fasta-get-markov
estimates a Markov model from a FASTA file of sequences.
It Ignores (removes) ambiguous characters before computing
the model. Both strands of DNA are combined unless -norc is set.
Input:
- Sequences in FASTA format from
stdin
Output:
- Writes the Markov model in
background model format to
stdout.
Options:
-m <n>- Order of Markov model to use. Default value is 0.-norc- Do not combine forward and reverse complement frequencies.-p- Use protein alphabet. Default is to use DNA alphabet.
Bugs: None known.
Author: Tim Bailey