Return profile for SWAT

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Profile for SWAT

This page is for users that want to run SWAT locally rather than submitting to our webpage. The advantage of doing this is running searches against large databases.
Given a transmembrane sequence and the substitution scoring matrices to be used on nontransmembrane and transmembrane regions, a profile is returned that is in the correct format for searches using SWAT ( Phil Green, U.of Washington ). Please contact Phil Green in order to obtain SWAT.

Select the matrix for nontransmembrane regions:

Select the matrix for transmembrane regions:

Enter the name of the file containing your sequence in FASTA format:
-or-
Enter the sequence in FASTA format here:

Enter the name of the file containing transmembrane regions in corresponding FASTA-like format (Example) (Transmembrane Prediction Websites)
-or-
Enter the corresponding transmembrane regions in FASTA-like format here (Example) (Transmembrane Prediction Websites)

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