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Alignment

                          1                                                 50
                   QUERY  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1OY_P20892  PQITLWQRPI VTIKIGGQLK EALLDTGADD TVLEEMNLPG RWKPKMIGGI
        POL_HV1RH_P05959  PQITLWQRPI VTVKIGGQLK EALLDTGADD TVLEEMNLPG KWKPKMIGGI
        POL_HV1Y2_P35963  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMNLPG RWKPKMIGGI
        POL_HV1Z2_P12499  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMNLPG KWKPKMIGGI
      POL_HV1MA_P04588_Q  PQITLWQRPV VTVRVGGQLK EALLDTGADD TVLEEINLPG KWKPKMIGGI
        POL_HV1B5_P04587  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1BR_P03367  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1B1_P03366  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1PV_P03368  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1A2_P03369  PQITLWQRPL VTIRIGGQLK EALLDTGADD TVLEEMNLPG KWKPKMIGGI
      POL_HV1H2_P04585_O  PQVTLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMSLPG RWKPKMIGGI
        POL_HV1N5_P12497  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEMNLPG RWKPKMIGGI
      POL_HV1EL_P04589_Q  PQITLWQRPL VAIKIGGQLK EALLDTGADD TVLEEMNLPG KWKPKMIGGI
        POL_HV1ND_P18802  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEEINLPG KWKPKMIGGI
        POL_HV1JR_P20875  PQITLWQRPL VTIKIGGQLK EALLDTGADD TVLEDMDLPG RWKPKMIGGI
        POL_HV1MN_P05961  PQITLWQRPI VTIKIGGQLK EALLDTGADD TVLGEMNLPR RWKPKMIGGI
        POL_SIVM1_P05896  PQFSLWRRPV VTAHIEGQPV EVLLDTGADD SIVTGIELGP HYTPKIVGGI
        POL_HV2CA_P24107  PQFSLWKRPV VTAHIEGQPV EVLLDTGADD SIVAGIELGS NYSPKIVGGI
      POL_HV2RO_P04584_Q  PQFSLWKRPV VTAYIEGQPV EVLLDTGADD SIVAGIELGN NYSPKIVGGI
        POL_HV2KR_Q74120  PQFSLWKRPV VTAYVEGQPV EVLLDTGADD SIVAGIELGS NYSPKIVGGI
        POL_SIVMK_P05897  PQFSLWRRPV VTAHIEGQPV EVLLDTGADD SIVTGIELGP HYTPKIVGGI
      POL_HV2SB_P12451_Q  PQFSLWKRPV VTAYIEDQPV EVLLDTGADD SIVAGIELGS NYSPKIVGGI
      POL_HV2BE_P18096_Q  PQFSLWKRPV VTAYIEDQPV EVLLDTGADD SIVAGIELGD NYTPKIVGGI
        POL_HV2ST_P20876  PQFSLWKRPV VTAHVEGQPV EVLLDTGADD SIVAGVELGS NYSPKIVGGI
        POL_SIVS4_P12502  PQFSLWRRPV VTAYIEEQPV EVLLDTGADD SIVAGIELGP NYTPKIVGGI
      POL_SIVSP_P19505_Q  PQFSLWRRPI VTAYIEEQPV EVLLDTGADD SIVAGIELGP NYTPKIVGGI
        POL_HV2D2_P15833  PQFSLWRRPV VKACIEGQSV EVLLDTGVDD SIVAGIELGS NYTPKIVGGI
        POL_HV2D1_P17757  PQFSLWKRPV VTAFIEDQPV EVLLDTGADD SIVAGIELGD NYTPKIVGGI
        POL_SIVCZ_P17283  PQITLWQRPL IPVKVEGQLC EALLDTGADD TVIERIQLQG LWKPKMIGGI
      POL_HV2NZ_P05962_Q  PQFSLWKRPV VTAHIEGQPV EVLLDTRAND SIVAGIELGS NYSPKIVGGI
        POL_HV2G1_P18042  PQFSLWKRPV VTAYIEVQPV EVLLDTGADD SIVAGIQLGD NYVPKIVGGI
        POL_HV1U4_P24740  PQITLWQRPL VTVKIGGQLI EALLDTGADD TVLEDINLPG KWKPKIIGGI
        POL_SIVA1_P27973  XELPLWRRPI RTCIIGGTAV KALLDTGADD TIIKDTDLQG SWRPKIVGGI
        POL_SIVGB_P22382  PEYSLSRRPI EEVSVDGVTI RALLDTGADD TIFNEIKLKG NWQPKIIGGI
        POL_SIVAG_P27980  XELPLWRRPI KTVYIEGVPI RALLDTGADD TIIKEADLSG TWKPKIIGGI
        POL_SIVAT_P05895  XELPLWRRPI KTVYIEGVPI KALLDTGADD TIIKENDLSG PWRPKIIGGI
        POL_SIVAI_Q02836  XELPLWRRPM KRVIIEGTPV QALLDTGADD TIIQEKDLPP HWRSKVVGGI
         GAG_RSVP_P03322  XXXXXXXRPL VRVILGSHPV KALLDSGADI TIISEEDWPT DW-PVMIHGI
        GAG_AVIMA_P26315  XXXXXXXRPL VRVILGSHPV KALLDSGADI TIISEEDWPT DW-PVMIHGI

                          51                                                100
                   QUERY  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1OY_P20892  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQLGCTLNF
        POL_HV1RH_P05959  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1Y2_P35963  GGFIKVRQYD QIPIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1Z2_P12499  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
      POL_HV1MA_P04588_Q  GGFIKVRQYD QILIEICGKK AIGTILVGPT PVNIIGRNML TQIGCTLNF
        POL_HV1B5_P04587  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1BR_P03367  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1B1_P03366  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1PV_P03368  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1A2_P03369  GGFIKVRQYD QIPVEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
      POL_HV1H2_P04585_O  GGFIKVRQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1N5_P12497  GGFIKVGQYD QILIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
      POL_HV1EL_P04589_Q  GGFIKVRQYD QIPIEICGQK AIGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1ND_P18802  GGFIKVRQYD QILIEICGYK AMGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1JR_P20875  GGFIKVRQYD QIPIDICGHK AVGTVLVGPT PVNIIGRNLL TQIGCTLNF
        POL_HV1MN_P05961  GGFIKVRQYD QITIGICGHK AIGTVLVGPT PVNIIGRNLL TQLGCTLNF
        POL_SIVM1_P05896  GGFINTKEYK NVEIEVLGKR IKGTIMTGDT PINIFGRNLL TALGMSLNX
        POL_HV2CA_P24107  GGFINTKEYK NVEIEVLGKR VRATIMTGDT PINIFGRNIL TALGMSLNX
      POL_HV2RO_P04584_Q  GGFINTKEYK NVEIEVLNKK VRATIMTGDT PINIFGRNIL TALGMSLNX
        POL_HV2KR_Q74120  GGFINTKEYK NVEIKVLNKK VKATIMTGDT PINIFGRNIL TALGMSLNX
        POL_SIVMK_P05897  GGFINTKEYK NVEIEVLGKR IKRTIMTGDT PINIFGRNLL TALGMSLNX
      POL_HV2SB_P12451_Q  GGFINTKEYK DVEIRVLNKK VRATIMTGDT PINIFGRNIL TALGMSLNX
      POL_HV2BE_P18096_Q  GGFINTKEYK NVEIKVLNKR VRATIMTGDT PINIFGRNIL TALGMSLNX
        POL_HV2ST_P20876  GGFINTKEYK NVEIRVLNKR VRATIMTGDT PINIFGRNIL TALGMSLNX
        POL_SIVS4_P12502  GGFINTKEYK DVKIKVLGKV IKGTIMTGDT PINIFGRNLL TAMGMSLNX
      POL_SIVSP_P19505_Q  GGFINTKEYK DVKIKVLGKV IKGTIMTGDT PINIFGRNLL TAMGMSLNX
        POL_HV2D2_P15833  GGFINTKEYK DVEIEVVGKR VRATIMTGDT PINIFGRNIL NTLGMTLNF
        POL_HV2D1_P17757  GGFINTKEYK NVEIKVLNKR VRATIMTGDT PINIFGRNIL ATLGMSLNX
        POL_SIVCZ_P17283  GGFIKVKQFD NVHIEIEGRK VVGTVLVGPT PVNIIGRNIL TQLGCTLVF
      POL_HV2NZ_P05962_Q  GGFINTKEYK NVEIEVLGKR VKATIMTGDT PINIFGRNVL TALGMSLNX
        POL_HV2G1_P18042  GGFINTKEIK NIEIKVLNKR VRATIMTGDT PINIFGRNIL TALGMSLNX
        POL_HV1U4_P24740  GGFIKVRQYD QILIEICGKK TIGTVLVGPT PVNIIGRNML TQIGCTLNF
        POL_SIVA1_P27973  GGGLNVKEYD NVEVQLEDKI LRGTVLIGAT PINIIGRNFL AQAGAKLXX
        POL_SIVGB_P22382  GGNLRVKQYD NVYVEIRGKG TFGTVLIGPT PIDIIGRNIM EKLGGKLXX
        POL_SIVAG_P27980  GGGLNVKEYS DREVRLEDKI LRGTILIGST PINIIGRNIL APAGAKLXX
        POL_SIVAT_P05895  GGGLNVKEYN DREVKIEDKI LRGTILLGAT PINIIGRNLL XXXXXXXXX
        POL_SIVAI_Q02836  GGGIHVKEYQ GVQVQLEDKI ITGSILIGST PINIIGRNIL AQAGMKLXX
         GAG_RSVP_P03322  GGGIPMRKSR DIELGVINRM VRGS------ ---ILGRDCL QGLGLRLXX
        GAG_AVIMA_P26315  GGGIPMRKSR DIEVGVINRM VRGS------ ---ILGRDCL QGLGLRLXX