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[ Module Hierarchy | Class Hierarchy ]

# Class Hierarchy

- Scientific.IO.PDB.Atom: Atom in a PDB structure
  - Scientific.IO.PDB.HetAtom: HetAtom in a PDB structure
- Scientific.Signals.Models.AutoRegressiveModel: Auto-regressive model for stochastic process
  - Scientific.Signals.Models.AveragedAutoRegressiveModel: Averaged auto-regressive model for stochastic process
- Scientific.Visualization.VRML2.Camera: Camera/viewpoint for a scene
- Scientific.IO.PDB.Chain: Chain of PDB residues
  - Scientific.IO.PDB.NucleotideChain: Nucleotide chain in a PDB file
  - Scientific.IO.PDB.PeptideChain: Peptide chain in a PDB file
- Scientific.Visualization.Color.Color: RGB Color specification
- Scientific.Visualization.Color.ColorScale: Mapping from a number interval to a color range
- Scientific.Functions.Derivatives.DerivVar: Numerical variable with automatic derivatives of arbitrary order
- Scientific.Functions.FirstDerivatives.DerivVar: Numerical variable with automatic derivatives of first order
- Scientific.IO.FortranFormat.FortranFormat: Parsed Fortran-style format string
- Scientific.IO.FortranFormat.FortranLine: Fortran-style record in formatted files
- Scientific.Geometry.Objects3D.GeometricalObject3D: Geometrical object in 3D space
  - Scientific.Geometry.Objects3D.Circle: Circle
  - Scientific.Geometry.Objects3D.Cone: Cone
  - Scientific.Geometry.Objects3D.Line: Line
  - Scientific.Geometry.Objects3D.Plane: Plane
  - Scientific.Geometry.Objects3D.Sphere: Sphere
- Scientific.Visualization.VPython.GraphicsObject: Graphics object for VPython
  - Scientific.Visualization.VPython.Material: Material specification for graphics objects
  - Scientific.Visualization.VPython.ShapeObject: Graphics objects representing geometrical shapes
    - Scientific.Visualization.VPython.Arrow: Arrow
    - Scientific.Visualization.VPython.Cone: Cone
    - Scientific.Visualization.VPython.Cube: Cube
    - Scientific.Visualization.VPython.Cylinder: Cylinder
    - Scientific.Visualization.VPython.PolyLines: Multiple connected lines
      - Scientific.Visualization.VPython.Line: Line
    - Scientific.Visualization.VPython.Polygons: Polygons
    - Scientific.Visualization.VPython.Sphere: Sphere
- Tkinter.Grid: Geometry manager Grid.
  - Tkinter.Widget: Internal class.
    - Tkinter.Frame: Frame widget which may contain other widgets and can have a 3D border.
      - Scientific.TkWidgets.ButtonBar: Horizontal array of buttons
      - Scientific.TkWidgets.FilenameEntry: Filename entry widget
      - Scientific.TkWidgets.FloatEntry: Entry field for float numbers
        - Scientific.TkWidgets.IntEntry: Entry field for integer numbers
      - Scientific.TkWidgets.TkPlotCanvas.PlotCanvas: Tk plot widget
      - Scientific.TkWidgets.StatusBar: Status bar
      - Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas: Tk visualization widget
- Scientific.Visualization.VRML2.Group: Base class for composite objects
  - Scientific.Visualization.VRML2.Arrow: Arrow
- Scientific.IO.PDB.Group: Atom group (residue or molecule) in a PDB file
  - Scientific.IO.PDB.Molecule: Molecule in a PDB file
  - Scientific.IO.PDB.Residue
    - Scientific.IO.PDB.AminoAcidResidue: Amino acid residue in a PDB file
    - Scientific.IO.PDB.NucleotideResidue: Nucleotide residue in a PDB file
- Scientific.Visualization.VPython.Group: Base class for composite objects
- Scientific.Visualization.PyMOL.Group: Base class for composite objects
  - Scientific.Visualization.PyMOL.Arrow: Arrow
- Scientific.Visualization.VMD.Group: Base class for composite objects
  - Scientific.Visualization.VMD.Arrow: Arrow
- Scientific.Visualization.VRML.Group: Base class for composite objects
  - Scientific.Visualization.VRML.Arrow: Arrow
- Scientific.Statistics.Histogram.Histogram: Histogram in one variable
  - Scientific.Statistics.Histogram.WeightedHistogram: Weighted histogram in one variable
- code.InteractiveInterpreter: Base class for InteractiveConsole.
  - code.InteractiveConsole: Closely emulate the behavior of the interactive Python interpreter.
    - Scientific.BSP.Console.ParallelConsole
  - Scientific.BSP.Console.ParallelInterpreter
- Scientific.Functions.Interpolation.InterpolatingFunction: Function defined by values on a grid using interpolation
  - Scientific.Functions.Interpolation.NetCDFInterpolatingFunction: Function defined by values on a grid in a netCDF file
  - Scientific.Geometry.TensorAnalysis.TensorField: Tensor field of arbitrary rank
    - Scientific.Geometry.TensorAnalysis.ScalarField: Scalar field (tensor field of rank 0)
    - Scientific.Geometry.TensorAnalysis.VectorField: Vector field (tensor field of rank 1)
- Scientific.Geometry.Objects3D.Lattice
  - Scientific.Geometry.Objects3D.RhombicLattice: Lattice with rhombic elementary cell
    - Scientific.Geometry.Objects3D.BravaisLattice: General Bravais lattice
      - Scientific.Geometry.Objects3D.SCLattice: Simple cubic lattice
- Scientific.MPI.IO.LogFile: File for logging events from all processes
- Scientific.MPI.MPICommunicator: MPI Communicator
- Scientific.MPI.MPIOperationObject
  - Scientific.MPI.band: The 'bitwise and' operation in reduce/allreduce communications.
  - Scientific.MPI.bor: The 'bitwise or' operation in reduce/allreduce communications.
  - Scientific.MPI.bxor: The 'bitwise exclusive-or' operation.
  - Scientific.MPI.land: The 'logical and' operation in reduce/allreduce communications.
  - Scientific.MPI.lor: The 'logical or' operation in reduce/allreduce communications.
  - Scientific.MPI.lxor: The 'logical exclusive-or' operation.
  - Scientific.MPI.max: The 'maximum' operation in reduce/allreduce communications.
  - Scientific.MPI.maxloc: The 'location of the maximum' operation.
  - Scientific.MPI.min: The 'minimum' operation in reduce/allreduce communications.
  - Scientific.MPI.minloc: The 'location of the minimum' operation.
  - Scientific.MPI.prod: The 'product' operation in reduce/allreduce communications.
  - Scientific.MPI.replace: The 'replace' operation.
  - Scientific.MPI.sum: The 'sum' operation in reduce/allreduce communications.
- Scientific.MPI.MPIRequest: MPI Request
- Tkinter.Misc: Internal class.
  - Tkinter.BaseWidget: Internal class.
    - Tkinter.Toplevel: Toplevel widget, e.g.
      - Scientific.TkWidgets.ModalDialog
    - Tkinter.Widget: Internal class.
      - Tkinter.Frame: Frame widget which may contain other widgets and can have a 3D border.
        - Scientific.TkWidgets.ButtonBar: Horizontal array of buttons
        - Scientific.TkWidgets.FilenameEntry: Filename entry widget
        - Scientific.TkWidgets.FloatEntry: Entry field for float numbers
          - Scientific.TkWidgets.IntEntry: Entry field for integer numbers
        - Scientific.TkWidgets.TkPlotCanvas.PlotCanvas: Tk plot widget
        - Scientific.TkWidgets.StatusBar: Status bar
        - Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas: Tk visualization widget
- Scientific.Visualization.VRML2.NavigationInfo: Navigation information
- Scientific.IO.NetCDF.NetCDFFile: netCDF file
- Scientific.IO.NetCDF.NetCDFVariable: Variable in a netCDF file
- Scientific.BSP.Console.OKToken
- Pyro.core.ObjBase
  - Scientific.DistributedComputing.TaskManager.TaskManager: Manager for computational tasks.
- Scientific.BSP.Console.OutputStream
- Scientific.IO.PDB.PDBFile: PDB file with access at the record level
- Tkinter.Pack: Geometry manager Pack.
  - Tkinter.Widget: Internal class.
    - Tkinter.Frame: Frame widget which may contain other widgets and can have a 3D border.
      - Scientific.TkWidgets.ButtonBar: Horizontal array of buttons
      - Scientific.TkWidgets.FilenameEntry: Filename entry widget
      - Scientific.TkWidgets.FloatEntry: Entry field for float numbers
        - Scientific.TkWidgets.IntEntry: Entry field for integer numbers
      - Scientific.TkWidgets.TkPlotCanvas.PlotCanvas: Tk plot widget
      - Scientific.TkWidgets.StatusBar: Status bar
      - Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas: Tk visualization widget
- Scientific.Physics.PhysicalQuantities.PhysicalQuantity: Physical quantity with units
- Scientific.Physics.PhysicalQuantities.PhysicalUnit: Physical unit
- Tkinter.Place: Geometry manager Place.
  - Tkinter.Widget: Internal class.
    - Tkinter.Frame: Frame widget which may contain other widgets and can have a 3D border.
      - Scientific.TkWidgets.ButtonBar: Horizontal array of buttons
      - Scientific.TkWidgets.FilenameEntry: Filename entry widget
      - Scientific.TkWidgets.FloatEntry: Entry field for float numbers
        - Scientific.TkWidgets.IntEntry: Entry field for integer numbers
      - Scientific.TkWidgets.TkPlotCanvas.PlotCanvas: Tk plot widget
      - Scientific.TkWidgets.StatusBar: Status bar
      - Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas: Tk visualization widget
- Scientific.QtWidgets.QtPlotCanvas.PlotGraphics: Compound graphics object
- Scientific.TkWidgets.TkPlotCanvas.PlotGraphics: Compound graphics object
- Scientific.QtWidgets.QtPlotCanvas.PolyPoints
  - Scientific.QtWidgets.QtPlotCanvas.PolyLine: Multiple connected lines
    - Scientific.QtWidgets.QtPlotCanvas.HorizontalLine: A horizontal line
    - Scientific.QtWidgets.QtPlotCanvas.VerticalLine: A vertical line
  - Scientific.QtWidgets.QtPlotCanvas.PolyMarker: Series of markers
- Scientific.TkWidgets.TkPlotCanvas.PolyPoints
  - Scientific.TkWidgets.TkPlotCanvas.PolyLine: Multiple connected lines
    - Scientific.TkWidgets.TkPlotCanvas.HorizontalLine: A horizontal line
    - Scientific.TkWidgets.TkPlotCanvas.VerticalLine: A vertical line
  - Scientific.TkWidgets.TkPlotCanvas.PolyMarker: Series of markers
- Scientific.QtWidgets.QtVisualizationCanvas.PolyPoints3D
  - Scientific.QtWidgets.QtVisualizationCanvas.PolyLine3D: Multiple connected lines
- Scientific.TkWidgets.TkVisualizationCanvas.PolyPoints3D
  - Scientific.TkWidgets.TkVisualizationCanvas.PolyLine3D: Multiple connected lines
- Scientific.Functions.Polynomial.Polynomial: Multivariate polynomial
- Scientific.Physics.Potential.PotentialWithGradients
- Scientific.Physics.Potential.PotentialWithGradientsAndForceConstants
- Scientific.Visualization.PyMOL.PyMOLObject: Graphics object for PyMOL
  - Scientific.Visualization.PyMOL.Material: Material specification for graphics objects
  - Scientific.Visualization.PyMOL.Molecules: Molecules from a PDB file
  - Scientific.Visualization.PyMOL.ShapeObject: Graphics objects representing geometrical shapes
    - Scientific.Visualization.PyMOL.Cone: Cone
    - Scientific.Visualization.PyMOL.Cube: Cube
    - Scientific.Visualization.PyMOL.Cylinder: Cylinder
    - Scientific.Visualization.PyMOL.Line: Line
    - Scientific.Visualization.PyMOL.Sphere: Sphere
- Scientific.Geometry.Quaternion.Quaternion: Quaternion (hypercomplex number)
- Scientific.Functions.Rational.RationalFunction: Rational Function
- Scientific.IO.PDB.ResidueNumber: PDB residue number
- Scientific.Visualization.VRML.Scene: VRML scene
- Scientific.Visualization.PyMOL.Scene: PyMOL scene
- Scientific.Visualization.VRML2.Scene: VRML scene
- Scientific.Visualization.VMD.Scene: VMD scene
- Scientific.Visualization.VPython.Scene: VPython scene
- Scientific.Visualization.VMD.SceneFile
- Scientific.Visualization.VRML2.SceneFile
- Scientific.Visualization.VRML.SceneFile
- Scientific.IO.PDB.Structure: A high-level representation of the contents of a PDB file
- Scientific.Visualization.Color.SymmetricColorScale: Mapping of a symmetric number interval to a color range
- Scientific.Threading.TaskManager.TaskManager: Parallel task manager for shared-memory multiprocessor machines
- Scientific.Geometry.Tensor: Tensor in 3D space
- Scientific.IO.TextFile.TextFile: Text files with line iteration and transparent compression
- Scientific.Geometry.Transformation.Transformation: Linear coordinate transformation.
  - Scientific.Geometry.Transformation.LinearTransformation: General linear transformation.
  - Scientific.Geometry.Transformation.RigidBodyTransformation: Combination of translations and rotations
    - Scientific.Geometry.Transformation.Rotation: Rotational transformation
    - Scientific.Geometry.Transformation.RotationTranslation: Combined translational and rotational transformation.
    - Scientific.Geometry.Transformation.Translation: Translational transformation
  - Scientific.Geometry.Transformation.Scaling: Scaling
    - Scientific.Geometry.Transformation.Inversion
  - Scientific.Geometry.Transformation.Shear
- UserDict.UserDict
  - Scientific.DictWithDefault.DictWithDefault: Dictionary with default values
- Scientific.Visualization.VMD.VMDObject: Graphics object for VMD
  - Scientific.Visualization.VMD.Material: Material specification for graphics objects
  - Scientific.Visualization.VMD.Molecules: Molecules from a PDB file
  - Scientific.Visualization.VMD.ShapeObject: Graphics objects representing geometrical shapes
    - Scientific.Visualization.VMD.Cone: Cone
    - Scientific.Visualization.VMD.Cube: Cube
    - Scientific.Visualization.VMD.Cylinder: Cylinder
    - Scientific.Visualization.VMD.Line: Line
    - Scientific.Visualization.VMD.Sphere: Sphere
- Scientific.Visualization.VRML2.VRMLObject: Graphics object for VRML
  - Scientific.Visualization.VRML2.Material: Material specification for graphics objects
  - Scientific.Visualization.VRML2.ShapeObject: Graphics objects representing geometrical shapes
    - Scientific.Visualization.VRML2.Cube: Cube
    - Scientific.Visualization.VRML2.Line: Line
    - Scientific.Visualization.VRML2.LinearOrientedObject
      - Scientific.Visualization.VRML2.Cone: Cone
      - Scientific.Visualization.VRML2.Cylinder: Cylinder
    - Scientific.Visualization.VRML2.PolyLines: Multiple connected lines
    - Scientific.Visualization.VRML2.Polygons: Polygons
    - Scientific.Visualization.VRML2.Sphere: Sphere
- Scientific.Visualization.VRML.VRMLObject: Graphics object for VRML
  - Scientific.Visualization.VRML.Material: Material specification for graphics objects
  - Scientific.Visualization.VRML.ShapeObject: Graphics objects representing geometrical shapes
    - Scientific.Visualization.VRML.Cube: Cube
    - Scientific.Visualization.VRML.Line: Line
    - Scientific.Visualization.VRML.LinearOrientedObject
      - Scientific.Visualization.VRML.Cone: Cone
      - Scientific.Visualization.VRML.Cylinder: Cylinder
    - Scientific.Visualization.VRML.PolyLines: Multiple connected lines
    - Scientific.Visualization.VRML.Polygons: Polygons
    - Scientific.Visualization.VRML.Sphere: Sphere
- Scientific.Geometry.Vector: Vector in 3D space
- Scientific.QtWidgets.QtVisualizationCanvas.VisualizationGraphics: Compound graphics object
- Scientific.TkWidgets.TkVisualizationCanvas.VisualizationGraphics: Compound graphics object
- Tkinter.Wm: Provides functions for the communication with the window manager.
  - Tkinter.Toplevel: Toplevel widget, e.g.
    - Scientific.TkWidgets.ModalDialog
- object: The most base type
  - exceptions.BaseException: Common base class for all exceptions
    - exceptions.Exception: Common base class for all non-exit exceptions.
      - Scientific.BSP.Console.BSPSyncError
      - exceptions.StandardError: Base class for all standard Python exceptions that do not represent interpreter exiting.
        - exceptions.ValueError: Inappropriate argument value (of correct type).
          - Scientific.IterationCountExceededError
      - Scientific.DistributedComputing.TaskManager.TaskManagerTermination: Signals that the task manager has no more tasks to handle.
      - Scientific.DistributedComputing.TaskManager.TaskRaisedException: Signals that an exception was raised inside a task.
  - Scientific.Clustering.AffinityPropagation.DataSet: A collection of data items with similarities
  - Scientific.DistributedComputing.MasterSlave.GlobalStateValue
  - Scientific.DistributedComputing.MasterSlave.MasterProcess: Master process in a master-slave setup
  - Scientific.BSP.ParBase: Distributed data base class
  - Scientific.BSP.ParClass: Global class
  - Scientific.BSP.ParIndex: Parallel index value
  - Scientific.BSP.ParIndexIterator: Parallel index iterator
  - Scientific.BSP.ParIterator: Parallel iterator
  - Scientific.BSP.ParValue: Global data
    - Scientific.BSP.ParAccumulator: Global accumulator
    - Scientific.BSP.ParConstant: Global constant
    - Scientific.BSP.ParData: Global data
    - Scientific.BSP.ParFunction: Global function
      - Scientific.BSP.ParRootFunction: Asymmetric global function
    - Scientific.BSP.ParMessages: Global message list
    - Scientific.BSP.ParSequence: Global distributed sequence
      - Scientific.BSP.ParRootSequence: Global distributed sequence with data taken from processor 0
    - Scientific.BSP.ParTuple: Global data tuple
  - Scientific.DistributedComputing.MasterSlave.SlaveProcess: Slave process in a master-slave setup
  - Scientific.IO.PDBSpaceGroups.SpaceGroup
  - Scientific.DistributedComputing.TaskManager.Task: Describes a task inside the task manager.
  - Scientific.DistributedComputing.TaskManager.TaskQueue: A FIFO queue for tasks.
  - Scientific.DistributedComputing.TaskManager.Watchdog: A background process that watches compute tasks and unregisters those that do not ping the task manager at the promised interval.
  - dict: dict() -> new empty dictionary.
    - Scientific.NumberDict.NumberDict: Dictionary storing numerical values
  - float: float(x) -> floating point number
  - int: int(x[, base]) -> integer
    - qt.Qt.AlignmentFlags
    - qt.Qt.AnchorAttribute
    - qt.Qt.ArrowType
    - qt.Qt.BGMode
    - qt.Qt.BackgroundMode
    - qt.QWidget.BackgroundOrigin
    - qt.Qt.BrushStyle
    - qt.Qt.ButtonState
    - qt.Qt.Corner
    - qt.Qt.CursorShape
    - qt.Qt.DateFormat
    - qt.Qt.Dock
    - qt.QWidget.FocusPolicy
    - qt.Qt.GUIStyle
    - qt.Qt.ImageConversionFlags
    - qt.Qt.Key
    - qt.Qt.MacintoshVersion
    - qt.Qt.Modifier
    - qt.Qt.Orientation
    - qt.QPaintDevice.PDevCmd
    - qt.Qt.PenCapStyle
    - qt.Qt.PenJoinStyle
    - qt.Qt.PenStyle
    - qt.Qt.RasterOp
    - qt.Qt.SequenceMatch
    - qt.Qt.SortOrder
    - qt.Qt.StringComparisonMode
    - qt.Qt.TextFlags
    - qt.Qt.TextFormat
    - qt.Qt.TimeSpec
    - qt.Qt.UIEffect
    - qt.Qt.WidgetFlags
    - qt.Qt.WidgetState
    - qt.Qt.WindowState
    - qt.Qt.WindowsVersion
  - sip.wrapper
    - qt.QPaintDevice
      - qt.QWidget
        - Scientific.QtWidgets.QtPlotCanvas.PlotCanvas: Qt plot widget
        - Scientific.QtWidgets.QtVisualizationCanvas.VisualizationCanvas: Qt visualization widget
    - qt.Qt
      - qt.QObject
        - qt.QWidget
          - Scientific.QtWidgets.QtPlotCanvas.PlotCanvas: Qt plot widget
          - Scientific.QtWidgets.QtVisualizationCanvas.VisualizationCanvas: Qt visualization widget