NAME
    Bio::IlluminaSAV - Parse Illumina SAV files

SYNOPSIS
    Routines for parsing and extracting information from Illumina SAV files
    (aka "InterOp").

        use IlluminaSAV;

        my $savs = IlluminaSAV->new("/path/to/rundirectory");
        my @qmetrics = $savs->quality_metrics();
        my $cur_cycle = $savs->cur_cycle();
        my $num_reads = $savs->num_reads();

DESCRIPTION
    Easy access to Illumina's SAV file data.

AUTHOR
    Andrew Hoerter & Erik Aronesty, <earonesty@cpan.org>

COPYRIGHT AND LICENSE
    Copyright (C) 2013 Erik Aronesty / Expression Analysis

    This library is free software; you can redistribute it and/or modify it
    under the same terms as Perl itself, either Perl version 5.10.1 or, at
    your option, any later version of Perl 5 you may have available.

CONSTANTS
        # constants you can use
        TILE_METRIC_CLUST_DENS
        TILE_METRIC_PF_CLUST_DENS
        TILE_METRIC_NUM_CLUSTERS
        TILE_METRIC_NUM_PF_CLUSTERS
        TILE_METRIC_CONTROL_LANE

FUNCTIONS
    cur_cycle Return the current run extraction cycle
    cur_copy_cycle Return the current copy cycle
    max_cycles Return the maximum number of cycles
    num_lanes Return the number of lanes
    num_reads Return the number of reads
    run_info Returns a hash with RunInfo.xml info
    extraction_metrics Load extraction metrics
    quality_metrics Load quality metrics
    error_metrics Load error metrics
    tile_metrics Load tile metrics
    corrected_int_metrics Load corrected int metrics
    control_metrics Load control metrics
    image_metrics Load image metrics
    parse_sav_file(PATHNAME) Load binary SAV-format file PATHNAME, inferring
    the type from the filename

