gbwt_helper.hpp File Reference

#include <vector>
#include "position.hpp"
#include "xg.hpp"
#include <gbwt/dynamic_gbwt.h>

Namespaces
	vg

Functions
handle_t	vg::gbwt_to_handle (const HandleGraph &graph, gbwt::node_type node)
	Convert gbwt::node_type to handle_t. More...
pos_t	vg::gbwt_to_pos (gbwt::node_type node, size_t offset)
	Convert gbwt::node_type and an offset as size_t to pos_t. More...
gbwt::node_type	vg::handle_to_gbwt (const HandleGraph &graph, handle_t handle)
	Convert handle_t to gbwt::node_type. More...
gbwt::node_type	vg::pos_to_gbwt (pos_t pos)
	Extract gbwt::node_type from pos_t. More...
gbwt::node_type	vg::mapping_to_gbwt (const Mapping &mapping)
	Convert Mapping to gbwt::node_type. More...
gbwt::node_type	vg::xg_path_to_gbwt (const xg::XGPath &path, size_t i)
	Convert a node on XGPath to gbwt::node_type. More...
std::string	vg::thread_name (const gbwt::GBWT &gbwt_index, size_t i)
	Get a string representation of a thread name stored in GBWT metadata. More...
gbwt::GBWT	vg::get_gbwt (const std::vector< gbwt::vector_type > &paths)
	Transform the paths into a GBWT index. Primarily for testing. More...

Detailed Description

Utility classes and functions for working with GBWT.