vg::SnarlSeedClusterer Member List

This is the complete list of members for vg::SnarlSeedClusterer, including all inherited members.

CHAIN enum value	vg::SnarlSeedClusterer	private
ChildNodeType enum name	vg::SnarlSeedClusterer	private
cluster_chain_level(TreeState &tree_state, size_t depth) const	vg::SnarlSeedClusterer	private
cluster_one_chain(TreeState &tree_state, size_t chain_index_i) const	vg::SnarlSeedClusterer	private
cluster_one_node(TreeState &tree_state, id_t node_id, int64_t node_length) const	vg::SnarlSeedClusterer	private
cluster_one_snarl(TreeState &tree_state, size_t snarl_index_i) const	vg::SnarlSeedClusterer	private
cluster_seeds(const vector< pos_t > &seeds, int64_t read_distance_limit) const	vg::SnarlSeedClusterer
cluster_seeds(const vector< vector< pos_t >> &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) const	vg::SnarlSeedClusterer
cluster_seeds_internal(const vector< const vector< pos_t > * > &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) const	vg::SnarlSeedClusterer	private
cluster_snarl_level(TreeState &tree_state, size_t depth) const	vg::SnarlSeedClusterer	private
dist_index	vg::SnarlSeedClusterer	private
get_nodes(TreeState &tree_state, vector< hash_map< size_t, vector< pair< NetgraphNode, NodeClusters >>>> &snarl_to_nodes_by_level) const	vg::SnarlSeedClusterer	private
NODE enum value	vg::SnarlSeedClusterer	private
SNARL enum value	vg::SnarlSeedClusterer	private
SnarlSeedClusterer(MinimumDistanceIndex &dist_index)	vg::SnarlSeedClusterer
typeToString(ChildNodeType t)	vg::SnarlSeedClusterer	inlineprivatestatic