<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
 <class>TopFDDialog</class>
 <widget class="QMainWindow" name="TopFDDialog">
  <property name="geometry">
   <rect>
    <x>0</x>
    <y>0</y>
    <width>965</width>
    <height>610</height>
   </rect>
  </property>
  <property name="sizePolicy">
   <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
    <horstretch>100</horstretch>
    <verstretch>100</verstretch>
   </sizepolicy>
  </property>
  <property name="minimumSize">
   <size>
    <width>965</width>
    <height>610</height>
   </size>
  </property>
  <property name="maximumSize">
   <size>
    <width>965</width>
    <height>610</height>
   </size>
  </property>
  <property name="windowTitle">
   <string>TopFD</string>
  </property>
  <property name="windowIcon">
   <iconset>
    <normaloff>:/icon/toppic.ico</normaloff>:/icon/toppic.ico</iconset>
  </property>
  <widget class="QWidget" name="centralWidget">
   <widget class="QWidget" name="horizontalLayoutWidget">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>10</y>
      <width>436</width>
      <height>50</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout">
     <item>
      <widget class="QLabel" name="label">
       <property name="text">
        <string>Spectrum files: </string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="addButton">
       <property name="minimumSize">
        <size>
         <width>100</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>100</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>Add</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="delButton">
       <property name="minimumSize">
        <size>
         <width>100</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>100</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>Remove</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_13">
    <property name="geometry">
     <rect>
      <x>620</x>
      <y>290</y>
      <width>311</width>
      <height>41</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_13">
     <property name="spacing">
      <number>7</number>
     </property>
     <property name="sizeConstraint">
      <enum>QLayout::SetNoConstraint</enum>
     </property>
     <item>
      <widget class="QLabel" name="label_10">
       <property name="text">
        <string>Fragmentation:</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QComboBox" name="activationComboBox">
       <property name="enabled">
        <bool>true</bool>
       </property>
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>75</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="iconSize">
        <size>
         <width>20</width>
         <height>20</height>
        </size>
       </property>
       <property name="frame">
        <bool>true</bool>
       </property>
       <item>
        <property name="text">
         <string>FILE</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string>CID</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string>ETD</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string>HCD</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string>MPD</string>
        </property>
       </item>
       <item>
        <property name="text">
         <string>UVPD</string>
        </property>
       </item>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_2">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>170</y>
      <width>241</width>
      <height>44</height>
     </rect>
    </property>
    <layout class="QHBoxLayout">
     <property name="sizeConstraint">
      <enum>QLayout::SetDefaultConstraint</enum>
     </property>
     <property name="rightMargin">
      <number>0</number>
     </property>
     <item>
      <widget class="QLabel" name="label_2">
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="layoutDirection">
        <enum>Qt::LeftToRight</enum>
       </property>
       <property name="text">
        <string>Maximum charge: </string>
       </property>
      </widget>
     </item>
     <item alignment="Qt::AlignRight">
      <widget class="QLineEdit" name="maxChargeEdit">
       <property name="enabled">
        <bool>true</bool>
       </property>
       <property name="minimumSize">
        <size>
         <width>70</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>70</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>30</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_3">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>210</y>
      <width>241</width>
      <height>41</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_3">
     <item>
      <widget class="QLabel" name="label_3">
       <property name="sizePolicy">
        <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
         <horstretch>0</horstretch>
         <verstretch>0</verstretch>
        </sizepolicy>
       </property>
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="text">
        <string>Maximum mass (Da): </string>
       </property>
      </widget>
     </item>
     <item alignment="Qt::AlignRight">
      <widget class="QLineEdit" name="maxMassEdit">
       <property name="minimumSize">
        <size>
         <width>70</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>70</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>100000</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_4">
    <property name="geometry">
     <rect>
      <x>620</x>
      <y>210</y>
      <width>311</width>
      <height>41</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_4">
     <item>
      <widget class="QLabel" name="label_4">
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="text">
        <string>M/z error: </string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QLineEdit" name="mzErrorEdit">
       <property name="minimumSize">
        <size>
         <width>40</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>75</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>0.02</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_5">
    <property name="geometry">
     <rect>
      <x>300</x>
      <y>170</y>
      <width>271</width>
      <height>44</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_5">
     <item>
      <widget class="QLabel" name="label_5">
       <property name="minimumSize">
        <size>
         <width>110</width>
         <height>0</height>
        </size>
       </property>
       <property name="text">
        <string>MS1 S/N ratio: </string>
       </property>
      </widget>
     </item>
     <item alignment="Qt::AlignRight">
      <widget class="QLineEdit" name="ms1snRatioEdit">
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>70</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>3.0</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_7">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>550</y>
      <width>901</width>
      <height>50</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_7">
     <property name="spacing">
      <number>30</number>
     </property>
     <item>
      <widget class="QPushButton" name="exitButton">
       <property name="text">
        <string>Exit</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="clearButton">
       <property name="text">
        <string>Clear</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="defaultButton">
       <property name="text">
        <string>Default</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="outputButton">
       <property name="enabled">
        <bool>false</bool>
       </property>
       <property name="text">
        <string>Output Folder</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QPushButton" name="startButton">
       <property name="enabled">
        <bool>true</bool>
       </property>
       <property name="acceptDrops">
        <bool>false</bool>
       </property>
       <property name="text">
        <string>Start</string>
       </property>
       <property name="checkable">
        <bool>false</bool>
       </property>
       <property name="autoDefault">
        <bool>true</bool>
       </property>
       <property name="default">
        <bool>true</bool>
       </property>
       <property name="flat">
        <bool>false</bool>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_8">
    <property name="geometry">
     <rect>
      <x>620</x>
      <y>170</y>
      <width>311</width>
      <height>44</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_2" stretch="0,0">
     <item>
      <widget class="QLabel" name="label_6">
       <property name="minimumSize">
        <size>
         <width>120</width>
         <height>0</height>
        </size>
       </property>
       <property name="text">
        <string>Precursor window size (m/z): </string>
       </property>
      </widget>
     </item>
     <item alignment="Qt::AlignRight">
      <widget class="QLineEdit" name="windowSizeEdit">
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
         <width>75</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>3.0</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QTextBrowser" name="outputTextBrowser">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>360</y>
      <width>901</width>
      <height>181</height>
     </rect>
    </property>
    <property name="html">
     <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
&lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
p, li { white-space: pre-wrap; }
&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'MS Shell Dlg 2'; font-size:7.8pt; font-weight:400; font-style:normal;&quot;&gt;
&lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:'Cantarell'; font-size:11pt;&quot;&gt;Click the Start button to process the spectrum file.&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
    </property>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_9">
    <property name="geometry">
     <rect>
      <x>300</x>
      <y>210</y>
      <width>271</width>
      <height>41</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_8">
     <item>
      <widget class="QLabel" name="label_7">
       <property name="text">
        <string>MS2 S/N ratio:</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QLineEdit" name="ms2snRatioEdit">
       <property name="maximumSize">
        <size>
         <width>70</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>1.0</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QListWidget" name="listWidget">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>60</y>
      <width>901</width>
      <height>111</height>
     </rect>
    </property>
   </widget>
   <widget class="QWidget" name="horizontalLayoutWidget_10">
    <property name="geometry">
     <rect>
      <x>620</x>
      <y>250</y>
      <width>311</width>
      <height>41</height>
     </rect>
    </property>
    <layout class="QHBoxLayout" name="horizontalLayout_9">
     <item>
      <widget class="QLabel" name="label_8">
       <property name="minimumSize">
        <size>
         <width>110</width>
         <height>0</height>
        </size>
       </property>
       <property name="text">
        <string>Thread number:</string>
       </property>
      </widget>
     </item>
     <item>
      <widget class="QLineEdit" name="threadNumberEdit">
       <property name="minimumSize">
        <size>
         <width>0</width>
         <height>0</height>
        </size>
       </property>
       <property name="maximumSize">
        <size>
          <width>75</width>
         <height>16777215</height>
        </size>
       </property>
       <property name="text">
        <string>1</string>
       </property>
      </widget>
     </item>
    </layout>
   </widget>
   <widget class="QGroupBox" name="groupBox">
    <property name="geometry">
     <rect>
      <x>30</x>
      <y>270</y>
      <width>541</width>
      <height>81</height>
     </rect>
    </property>
    <property name="title">
     <string>Additional settings</string>
    </property>
    <widget class="QWidget" name="horizontalLayoutWidget_11">
     <property name="geometry">
      <rect>
       <x>270</x>
       <y>20</y>
       <width>201</width>
       <height>21</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_10">
      <item>
       <widget class="QCheckBox" name="geneHTMLCheckBox">
        <property name="acceptDrops">
         <bool>false</bool>
        </property>
        <property name="text">
         <string>Generate HTML files</string>
        </property>
        <property name="checkable">
         <bool>true</bool>
        </property>
        <property name="checked">
         <bool>true</bool>
        </property>
       </widget>
      </item>
     </layout>
    </widget>
    <widget class="QWidget" name="horizontalLayoutWidget_12">
     <property name="geometry">
      <rect>
       <x>270</x>
       <y>50</y>
       <width>201</width>
       <height>21</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_11">
      <item>
       <widget class="QCheckBox" name="finalFilteringCheckBox">
        <property name="acceptDrops">
         <bool>false</bool>
        </property>
        <property name="text">
         <string>Disable final filtering</string>
        </property>
        <property name="checkable">
         <bool>true</bool>
        </property>
        <property name="checked">
         <bool>false</bool>
        </property>
       </widget>
      </item>
     </layout>
    </widget>
    <widget class="QWidget" name="horizontalLayoutWidget_14">
     <property name="geometry">
      <rect>
       <x>10</x>
       <y>20</y>
       <width>201</width>
       <height>21</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_12">
      <item>
       <widget class="QCheckBox" name="missLevelOneCheckBox">
        <property name="acceptDrops">
         <bool>false</bool>
        </property>
        <property name="text">
         <string>Missing MS1 spectra</string>
        </property>
        <property name="checkable">
         <bool>true</bool>
        </property>
        <property name="checked">
         <bool>false</bool>
        </property>
       </widget>
      </item>
     </layout>
    </widget>
    <widget class="QWidget" name="horizontalLayoutWidget_15">
     <property name="geometry">
      <rect>
       <x>10</x>
       <y>50</y>
       <width>201</width>
       <height>21</height>
      </rect>
     </property>
     <layout class="QHBoxLayout" name="horizontalLayout_14">
      <item>
       <widget class="QCheckBox" name="envCNNCheckBox">
        <property name="minimumSize">
         <size>
          <width>150</width>
          <height>0</height>
         </size>
        </property>
        <property name="acceptDrops">
         <bool>false</bool>
        </property>
        <property name="text">
         <string>Use EnvCNN for scoring</string>
        </property>
        <property name="checkable">
         <bool>true</bool>
        </property>
        <property name="checked">
         <bool>false</bool>
        </property>
       </widget>
      </item>
     </layout>
    </widget>
   </widget>
   <zorder>listWidget</zorder>
   <zorder>horizontalLayoutWidget</zorder>
   <zorder>horizontalLayoutWidget_13</zorder>
   <zorder>horizontalLayoutWidget_2</zorder>
   <zorder>horizontalLayoutWidget_3</zorder>
   <zorder>horizontalLayoutWidget_4</zorder>
   <zorder>horizontalLayoutWidget_5</zorder>
   <zorder>horizontalLayoutWidget_7</zorder>
   <zorder>horizontalLayoutWidget_8</zorder>
   <zorder>outputTextBrowser</zorder>
   <zorder>horizontalLayoutWidget_9</zorder>
   <zorder>horizontalLayoutWidget_10</zorder>
   <zorder>groupBox</zorder>
  </widget>
 </widget>
 <resources/>
 <connections/>
</ui>
