Data_file_name	Prsm_ID	Spectrum_ID	Scan(s)	#peaks	Charge	Precursor_mass	Adjusted_precursor_mass	Protein_ID	Protein_name	Protein_mass	First_residue	Last_residue	Peptide	#unexpected_modifications	#matched_peaks	#matched_fragment_ions	P-value	E-value	FDR
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1851	2638	3523	202	9	12160.52537071875	12160.430410581053	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	81.0	68.0	2.8572300509916986E-48	2.8572300509916986E-48	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1814	2586	3454	135	7	8103.07269846875	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	67.0	52.0	9.463848287432783E-46	9.463848287432783E-46	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1823	2595	3466	135	8	8103.0571216875	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	75.0	54.0	1.5375882612221888E-45	1.5375882612221888E-45	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1816	2588	3456	135	8	8103.0805591875	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	71.0	53.0	7.786550093946625E-45	7.786550093946625E-45	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1815	2587	3455	135	8	8103.0805591875	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	68.0	54.0	8.0243301757748E-45	8.0243301757748E-45	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1856	2651	3540	201	9	12160.497904898437	12160.430410581053	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	80.0	67.0	9.037842296440995E-44	9.037842296440995E-44	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1829	2604	3478	135	7	8103.027410382812	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	66.0	50.0	1.6352532392759772E-43	1.6352532392759772E-43	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1933	2863	3823	166	10	9972.992594546879	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	80.0	65.0	1.8961942259862832E-43	3.7923884519725665E-43	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1818	2590	3459	135	8	8103.04393809375	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	74.0	53.0	4.524720417259618E-43	4.524720417259618E-43	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1546	2138	2856	165	9	12939.57844478125	12939.526521878664	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	79.0	64.0	5.4530296114460535E-43	5.4530296114460535E-43	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1932	2862	3822	166	10	9972.992594546879	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	82.0	68.0	3.112394188056836E-43	6.224788376113672E-43	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1545	2137	2855	151	8	12938.5803496875	12938.5803496875	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC(GERFA)[-.95]YVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	1	72.0	64.0	8.227176309143343E-42	1.5375534267424206E-42	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1817	2589	3458	135	7	8103.033391828125	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	60.0	48.0	8.532441154941116E-42	8.532441154941116E-42	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1824	2596	3467	135	7	8103.047918195312	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	62.0	49.0	1.5112136416453784E-41	1.5112136416453784E-41	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1548	2140	2859	156	11	12939.60295528125	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	69.0	52.0	3.8711817595940443E-41	3.8711817595940443E-41	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1819	2591	3460	135	8	8103.04393809375	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	66.0	50.0	5.019806345625841E-41	5.019806345625841E-41	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1556	2148	2870	139	8	12939.5354278125	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	64.0	56.0	1.4067746943041754E-40	1.4067746943041754E-40	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1826	2598	3470	135	8	8103.06737559375	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	65.0	48.0	3.4288123037251186E-40	3.4288123037251186E-40	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1047	1482	1982	121	6	7267.620121265625	7267.58753033203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	2	70	M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	72.0	52.0	1.7697656361637403E-39	1.7697656361637403E-39	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1827	2599	3471	135	7	8103.055608625	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	59.0	49.0	2.8169994102815696E-39	2.8169994102815696E-39	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1904	2760	3686	203	12	12202.580438015626	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	82.0	66.0	1.061273601250708E-38	1.061273601250708E-38	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1820	2592	3462	135	6	8103.055316265626	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	61.0	49.0	1.156488484691046E-38	1.156488484691046E-38	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1084	1536	2054	114	6	7315.7871144531255	7315.736898618163	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	60.0	47.0	6.044206503744258E-39	1.2088413007488516E-38	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1888	2732	3648	200	9	12201.528535546875	12201.563535546875	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA(G)[-.88]PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	78.0	65.0	1.5854707782896518E-37	4.3829481098597727E-38	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1855	2650	3539	176	9	12160.497904898437	12160.430410581053	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	59.0	54.0	7.180549248033501E-38	7.180549248033501E-38	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	694	1109	1484	127	8	7655.994196	7655.959249692383	702	gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2]	9913.159528928223	22	91	A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK.	0	68.0	56.0	4.2976271952380706E-39	1.2033356146666598E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1894	2740	3659	203	9	12201.506562890625	12201.521562890624	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGVSAAA(A)[-.92]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	77.0	62.0	8.700438513861973E-37	2.407469633023438E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1555	2147	2868	154	10	12939.630006671876	12939.526521878664	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	65.0	55.0	2.875800590236581E-37	2.875800590236581E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1319	1820	2432	158	10	9515.218918429691	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	62.0	61.0	1.5211551156219446E-37	3.0423102312438893E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1821	2593	3463	134	6	8103.055316265626	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	59.0	47.0	3.241848386896936E-37	3.241848386896936E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1853	2641	3527	125	8	12160.511650625	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	55.0	50.0	4.197148927594522E-37	4.197148927594522E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1081	1533	2050	118	6	7315.7812550781255	7315.736898618163	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	62.0	48.0	4.21736555606245E-37	8.4347311121249E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1550	2142	2862	139	11	12939.600269734376	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	72.0	52.0	9.642388314029482E-37	9.642388314029482E-37	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1846	2633	3516	202	12	12160.524782953127	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	87.0	63.0	1.508180009239636E-36	1.508180009239636E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1825	2597	3468	135	6	8103.051654156251	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	61.0	49.0	2.1169010144238885E-36	2.1169010144238885E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1822	2594	3464	130	6	8103.055316265626	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	61.0	47.0	2.1793622173314755E-36	2.1793622173314755E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1890	2735	3652	124	8	12201.492110375	12201.492110375	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKT(E)[-.95]FDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	55.0	50.0	9.07447763073252E-36	2.3647595090839965E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1728	2385	3186	159	8	11782.2002071875	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	58.0	52.0	3.9326579641489465E-36	3.9326579641489465E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	897	1318	1763	138	7	8323.096706320312	8323.048940854495	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	63.0	59.0	3.1344436941451824E-36	6.268887388290365E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1843	2630	3512	142	8	12160.5087209375	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	55.0	49.0	6.293935310893351E-36	6.293935310893351E-36	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1726	2383	3183	146	9	11782.227721226562	11782.113416867674	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	50.0	45.0	1.0124421191137591E-35	1.0124421191137591E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1630	2256	3014	145	10	9175.706644328127	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	82.0	58.0	2.440443592623266E-35	2.440443592623266E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1845	2632	3515	134	8	12160.5126271875	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	51.0	47.0	3.2391574058866085E-35	3.2391574058866085E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	895	1316	1760	138	8	8323.098097312499	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	65.0	53.0	1.6805921127296123E-35	3.3611842254592245E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1876	2686	3587	155	9	12291.580168289061	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	59.0	52.0	3.025319802177651E-35	6.050639604355303E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	896	1317	1762	136	9	8323.093628929686	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	69.0	54.0	3.8498374503653365E-35	7.699674900730673E-35	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1781	2482	3315	125	7	8095.184881085937	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	65.0	54.0	2.2277399771342203E-34	2.2277399771342203E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1895	2741	3660	141	8	12201.50578225	12201.49578225	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITK)[42.01]DQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGAT(GLG)[-.95]LKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	60.0	55.0	1.200238911108954E-33	3.288897395485029E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1623	2249	3004	146	10	9175.715189250002	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	82.0	57.0	5.311442824930731E-34	5.311442824930731E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1777	2478	3310	130	7	8095.212224835937	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	63.0	54.0	7.049987144780163E-34	7.049987144780163E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	657	1070	1432	168	13	11178.299798410155	11178.26911755127	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	0	66.0	43.0	7.6215487104934695E-34	7.6215487104934695E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	426	832	1115	132	8	7942.011717124999	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	69.0	50.0	4.695870981327256E-34	9.391741962654512E-34	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	898	1319	1764	134	7	8323.096706320312	8323.048940854495	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	60.0	55.0	5.575732155066639E-34	1.1151464310133277E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	750	1166	1560	171	14	10278.690207976562	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	61.0	44.0	1.2710113631422887E-33	1.2710113631422887E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	656	1069	1431	184	13	11178.299798410155	11178.26911755127	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	0	71.0	47.0	1.5417813592116124E-33	1.5417813592116124E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1639	2265	3026	144	9	9175.722587320312	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	78.0	57.0	1.6443185606592014E-33	1.6443185606592014E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	901	1322	1768	138	8	8323.106886374999	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	64.0	51.0	8.521116259489703E-34	1.7042232518979406E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	424	830	1112	132	8	7942.051756187499	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	66.0	50.0	1.8474826636229543E-33	3.6949653272459086E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1082	1534	2051	121	6	7315.7812550781255	7315.736898618163	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	56.0	43.0	2.1958364803529576E-33	4.391672960705915E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	423	829	1111	132	8	7942.051756187499	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	65.0	49.0	2.4638270569751116E-33	4.927654113950223E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	416	822	1102	132	10	7941.990085046876	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	63.0	47.0	2.863123290532238E-33	5.726246581064476E-33	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	894	1315	1759	133	9	8323.095826195311	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	61.0	52.0	5.021481899121909E-33	1.0042963798243818E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1780	2481	3314	125	7	8095.184881085937	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	65.0	52.0	1.5771867196788668E-32	1.5771867196788668E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1871	2671	3567	167	10	12291.582291703127	12291.470907407225	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	74.0	59.0	9.05028386777565E-33	1.81005677355513E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1622	2248	3003	143	9	9175.713248941405	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	74.0	54.0	2.238549295404139E-32	2.238549295404139E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1628	2254	3011	144	10	9175.751810343752	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	69.0	52.0	3.0288921416753076E-32	3.0288921416753076E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	892	1313	1756	138	8	8323.091261374999	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	63.0	51.0	1.8025068242528254E-32	3.605013648505651E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1935	2865	3826	144	9	9972.992058046875	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	61.0	52.0	2.3271008105298775E-32	4.654201621059755E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1901	2755	3679	184	9	12201.575776757812	12201.570776757813	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKD)[42.01]QIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEA(A)[-.87]EEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	60.0	53.0	1.6871706524554468E-31	4.6545388568607023E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	907	1328	1776	138	8	8323.085401999999	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	66.0	55.0	2.687130356943634E-32	5.374260713887268E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1624	2250	3006	146	9	9175.735221597655	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	73.0	53.0	5.913335181103068E-32	5.913335181103068E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1037	1469	1964	173	13	10534.66054774219	10534.588689999999	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	74.0	48.0	3.314532748031566E-32	6.629065496063131E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1852	2640	3526	166	10	12159.544950187503	12159.544950187503	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEA(AEEKTEFDVILKAAGANKVAV)[1083.76]IKAVRGAT(GLGLKEAKDLVE)[-1084.65]SAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	2	89.0	74.0	1.7292494524722207E-35	9.219735901494161E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	418	824	1104	132	10	7941.990085046876	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	63.0	48.0	4.7666845036338656E-32	9.533369007267731E-32	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1779	2480	3312	125	8	8095.21288340625	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	69.0	51.0	1.4992907016902554E-31	1.4992907016902554E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1828	2601	3474	133	6	8103.061908062501	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	56.0	45.0	1.7053793602041366E-31	1.7053793602041366E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1048	1484	1984	121	7	7267.62285503125	7267.58753033203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	2	70	M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	63.0	46.0	2.321109523713673E-31	2.321109523713673E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1036	1468	1963	165	16	10534.6759511875	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	70.0	42.0	1.2448491026295744E-31	2.4896982052591488E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1642	2268	3030	147	8	9175.7307178125	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	73.0	58.0	2.6273091911931062E-31	2.6273091911931062E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	902	1323	1770	138	7	8323.100978781249	8323.048940854495	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	56.0	51.0	1.7302550202516007E-31	3.4605100405032013E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1900	2748	3670	102	8	12202.4950400625	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	47.0	44.0	3.712683743386272E-31	3.712683743386272E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1621	2247	3002	151	9	9175.713248941405	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	74.0	53.0	5.56519993019623E-31	5.56519993019623E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1734	2391	3194	134	7	11782.169275179687	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	52.0	50.0	8.515901636949582E-31	8.515901636949582E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1934	2864	3824	119	9	9972.993156679688	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	54.0	48.0	4.893434228618846E-31	9.786868457237692E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	833	1251	1674	145	11	10406.176834726562	10406.176834726562	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPV(MELKD)[34.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	57.0	48.0	4.172885371839768E-32	9.82720197954175E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	654	1065	1426	137	16	11178.302323437498	11178.26911755127	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	0	57.0	37.0	9.95340728667423E-31	9.95340728667423E-31	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1144	1617	2162	205	13	12762.063170726562	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	57.0	46.0	5.176412862493354E-31	1.0352825724986708E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1422	1964	2624	149	7	9113.808578453125	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	49.0	47.0	5.252326787741721E-31	1.0504653575483442E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1893	2739	3658	168	10	12202.524677515627	12202.440977292483	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	81.0	60.0	1.4688476605745206E-30	1.4688476605745206E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	425	831	1114	132	9	7942.005905968751	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	61.0	45.0	9.625496346370039E-31	1.9250992692740078E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1049	1485	1986	121	8	7267.63852825	7267.587530332031	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	2	70	M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	61.0	40.0	3.372378882578686E-30	3.372378882578686E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	905	1326	1774	132	7	8323.093288351562	8323.048940854495	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	54.0	50.0	3.737337660578295E-30	7.47467532115659E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	429	835	1119	132	8	7942.007810874999	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	66.0	48.0	4.47877797763252E-30	8.95755595526504E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1033	1465	1959	170	14	10534.648144789066	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	71.0	44.0	4.732430259948385E-30	9.46486051989677E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	754	1170	1566	171	14	10278.692771453125	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	56.0	40.0	9.905175089864173E-30	9.905175089864173E-30	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1023	1455	1946	121	7	7266.773489796875	7266.748489796875	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	79.0	50.0	4.627610947275789E-29	1.1422545752902383E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	890	1311	1754	133	8	8323.091261374999	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	58.0	50.0	6.373295695007405E-30	1.274659139001481E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1891	2736	3654	203	11	12202.555487453128	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	80.0	57.0	1.379005095560559E-29	1.379005095560559E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	755	1171	1567	123	13	10278.701695402344	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	47.0	38.0	1.6706707103262132E-29	1.6706707103262132E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1600	2216	2960	79	9	8553.386233503905	8553.319486813965	2166	gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8684.359983640137	2	75	M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV.	0	43.0	37.0	2.1762860678103246E-29	2.1762860678103246E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1844	2631	3514	202	15	12159.539087765625	12159.499087765624	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAK(DLV)[-.93]ESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	74.0	50.0	1.5179291019286723E-28	2.8362385263572763E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1024	1456	1947	121	7	7266.773489796875	7266.748489796875	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	76.0	50.0	1.2490119215295733E-28	3.082993791427259E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1038	1470	1966	163	14	10534.643872328128	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	72.0	43.0	1.762456210368018E-29	3.524912420736036E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1645	2271	3034	120	10	9175.688944132815	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	60.0	47.0	6.255872334452719E-29	6.255872334452719E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1238	1726	2307	149	10	11205.283701578126	11205.283701578126	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVE(V)[-.95]EVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	1	53.0	46.0	5.496167626949604E-28	7.526464413226203E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1026	1458	1950	121	8	7266.7664579375	7266.746457937499	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	77.0	46.0	3.2942107630875697E-28	8.1312525166409E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1149	1622	2168	202	12	12762.048351999998	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	63.0	47.0	4.1309113566101595E-29	8.261822713220319E-29	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	421	827	1108	132	9	7942.002060753907	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	58.0	44.0	5.046394259077784E-29	1.0092788518155568E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	432	838	1123	132	10	7941.971164148438	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	53.0	38.0	5.108876822547934E-29	1.0217753645095868E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1074	1526	2040	121	7	7315.76836384375	7315.76336384375	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.(MSKI)[42.01]KGNVK(WFNE)[-173.02]SKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	1	56.0	43.0	3.8349325206722205E-28	1.0328187603807545E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	427	833	1116	132	7	7942.004466757812	7941.976240354004	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	60.0	46.0	5.532808115469477E-29	1.1065616230938954E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1629	2255	3012	148	9	9175.746757242187	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	68.0	49.0	1.2040307337438748E-28	1.2040307337438748E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1865	2663	3556	147	12	12291.567495562502	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	58.0	51.0	6.253932362383997E-29	1.2507864724767994E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1323	1824	2438	153	10	9515.229294406254	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	46.0	44.0	6.602234121304462E-29	1.3204468242608924E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	904	1325	1772	132	9	8323.09307961328	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	53.0	47.0	9.076678015843343E-29	1.8153356031686686E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1043	1475	1972	161	15	10534.649535781251	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	68.0	39.0	1.1812097052620523E-28	2.3624194105241046E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1631	2257	3015	142	7	9175.701128578125	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	71.0	52.0	2.5038167324455508E-28	2.5038167324455508E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	470	877	1175	130	7	7825.946510359375	7825.976510359375	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.00]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	55.0	45.0	1.2199786546926656E-27	2.5749973693225956E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1077	1529	2044	121	7	7315.784599195313	7315.759599195313	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.(MSKI)[42.01]KGNVK(WF)[-173.03]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	1	54.0	41.0	1.0583177100967652E-27	2.762180213207782E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1634	2260	3019	152	8	9175.7580615625	9175.6430615625	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.(SLEVFE)[-.00]KLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	1	72.0	55.0	1.533519012040585E-27	2.922772949032758E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1625	2251	3007	152	8	9175.7346240625	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	70.0	54.0	2.9508513185513362E-28	2.9508513185513362E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1549	2141	2860	125	12	12939.6137456875	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	66.0	45.0	3.6698658625353814E-28	3.6698658625353814E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1034	1466	1960	171	14	10534.648144789066	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	64.0	41.0	1.9232008896675272E-28	3.8464017793350544E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	932	1355	1812	152	8	9169.74146	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	53.0	46.0	4.283357645149177E-28	4.283357645149177E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	751	1167	1562	171	15	10278.693796234375	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	65.0	43.0	4.657851779753478E-28	4.657851779753478E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1848	2635	3519	202	11	12160.525345085942	12160.430410581057	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	77.0	57.0	4.92673439065866E-28	4.92673439065866E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	413	819	1098	132	11	7941.989156703124	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	55.0	37.0	2.617980868764243E-28	5.235961737528486E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1330	1831	2447	158	13	9515.20099667969	9515.172773557128	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	68.0	46.0	2.959265623579426E-28	5.918531247158852E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1898	2745	3666	203	15	12202.567032867188	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	66.0	48.0	6.865946096139058E-28	6.865946096139058E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1320	1821	2434	158	12	9515.207906468753	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	62.0	46.0	3.9608557240831755E-28	7.921711448166351E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1418	1960	2619	151	7	9113.797470054687	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	47.0	46.0	4.611938203096605E-28	9.22387640619321E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	899	1320	1766	125	10	8323.106738671875	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	50.0	43.0	4.97179947519002E-28	9.94359895038004E-28	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1733	2390	3192	140	7	11781.161828890625	11781.161828890625	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIA(PILD)[-.95]EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	1	54.0	52.0	9.268720584644706E-27	1.0582643012549651E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1316	1817	2428	158	13	9515.280342382815	9515.172773557128	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	65.0	45.0	5.630687865599487E-28	1.1261375731198974E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1554	2146	2867	153	12	9234.083186609374	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	61.0	49.0	7.270948926786904E-28	1.4541897853573808E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1627	2253	3010	146	8	9175.7424365625	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	65.0	50.0	1.4772343676759617E-27	1.4772343676759617E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1417	1959	2618	151	7	9113.797470054687	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	47.0	46.0	7.500606689457522E-28	1.5001213378915043E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	931	1354	1811	152	9	9169.73888370703	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	49.0	42.0	1.6717678704807497E-27	1.6717678704807497E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	448	855	1146	134	10	8094.008277929687	8094.008277929687	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNV(I)[152.03]KTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	53.0	41.0	7.146510053579203E-27	1.7761330298935912E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1073	1525	2039	121	7	7315.76836384375	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	56.0	41.0	1.3432447354556003E-27	2.6864894709112006E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1027	1459	1951	121	7	7266.764090382812	7266.744090382811	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.02]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	76.0	49.0	1.212744773138994E-26	3.0425472575031285E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1025	1457	1948	121	8	7266.77671184375	7266.74671184375	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	76.0	43.0	1.3803784288470324E-26	3.463108393478653E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1866	2664	3558	169	11	12291.574649492186	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	76.0	53.0	1.8568929678557803E-27	3.713785935711561E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1080	1532	2048	121	7	7315.788017164063	7315.753017164064	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.MSKIKGN(VKWF)[-131.02]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	1	53.0	41.0	1.5119440425036982E-26	3.9461325061821495E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1741	2404	3211	196	11	11782.21780789844	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	65.0	47.0	3.972567564502269E-27	3.972567564502269E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1626	2252	3008	145	8	9175.7346240625	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	65.0	49.0	5.3909874355363974E-27	5.3909874355363974E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1735	2392	3195	196	12	11782.192343421877	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	67.0	48.0	5.507085392997355E-27	5.507085392997355E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1039	1471	1967	163	16	10534.659349625	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	66.0	41.0	2.907387085954623E-27	5.814774171909246E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	761	1177	1575	84	12	10278.689257046875	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	36.0	29.0	6.035937220837464E-27	6.035937220837464E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	934	1357	1815	151	9	9169.749320718749	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	54.0	42.0	6.310212894067941E-27	6.310212894067941E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1867	2665	3559	138	12	12291.574819781252	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	51.0	46.0	4.0940730346895784E-27	8.188146069379157E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1874	2678	3576	201	11	12291.558536210936	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	76.0	55.0	4.23777059261885E-27	8.4755411852377E-27	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1028	1460	1952	121	8	7266.7664579375	7266.746457937499	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	1	69	.MAKIKGQV(KW)[-131.01]FNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	1	74.0	44.0	4.1543290470299705E-26	1.0254322187617379E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	414	820	1099	132	12	7941.993599453127	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	52.0	37.0	6.482890831173319E-27	1.2965781662346638E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1605	2223	2970	104	9	9306.7312263125	9306.687360959471	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	1	79	.MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	58.0	43.0	6.793388850899151E-27	1.3586777701798302E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	655	1067	1428	186	14	11177.309795359375	11177.309795359375	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKD(KGKRGKVK)[-.96]NVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	1	70.0	44.0	1.1722808793644021E-25	1.376239057146027E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	446	853	1143	134	10	8093.988136328125	8093.988136328125	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(C)[152.01]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	53.0	40.0	7.624092099402214E-26	1.9226923294667896E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1868	2666	3560	59	8	12292.5516776875	12292.521677687499	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKF(G)[1.05]VSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	33.0	32.0	7.481552135694806E-26	2.4055324251152196E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1864	2662	3555	77	8	12290.511638625	12290.511638625	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGV(SAAAA)[-.96]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	35.0	32.0	8.552410256025217E-26	2.454227056849584E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	443	850	1139	134	11	8094.011866187499	8094.011866187499	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(C)[152.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	49.0	36.0	1.6106202957830691E-25	4.0028991556858943E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1776	2477	3308	91	7	8095.216497296875	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	42.0	39.0	7.353795559019982E-26	7.353795559019982E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1785	2486	3320	109	6	8095.172992046876	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	37.0	35.0	7.555536084438093E-26	7.555536084438093E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1889	2733	3650	203	15	12201.5398111875	12201.5248111875	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGAT(GLGLKEAKDLVE)[-.92]SAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	66.0	46.0	3.170792587782325E-25	8.761334734427728E-26	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	422	828	1110	132	9	7942.0443581171885	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	58.0	42.0	7.147288665888459E-26	1.4294577331776919E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	929	1352	1808	152	9	9169.739982339843	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	52.0	43.0	1.5455059883542058E-25	1.5455059883542058E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1030	1462	1955	121	6	7266.7536661875	7266.720510678711	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	2	69	M.AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	0	69.0	42.0	1.5988667663424557E-25	1.5988667663424557E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1638	2264	3024	150	7	9175.728472328125	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	66.0	48.0	1.7059329838135666E-25	1.7059329838135666E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1539	2131	2847	153	12	9234.080989343749	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	57.0	46.0	9.947952681628847E-26	1.9895905363257693E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1040	1472	1968	166	13	10534.639917859378	10534.588689999999	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	61.0	41.0	1.081911920715441E-25	2.163823841430882E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1632	2258	3016	152	7	9175.701128578125	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	64.0	47.0	2.796257693573605E-25	2.796257693573605E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	472	879	1178	130	8	7825.95363865625	7825.95363865625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.02]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	58.0	43.0	1.4816741050094867E-24	3.127355472915207E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1787	2488	3323	93	6	8095.209613140626	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	34.0	32.0	3.5395334870518794E-25	3.5395334870518794E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	830	1248	1670	148	13	10406.176076671874	10406.171076671875	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNN(NG)[34.03]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	55.0	41.0	1.6200546145296735E-26	3.859542959331136E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1635	2261	3020	148	7	9175.75410709375	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	63.0	46.0	4.4945816809855265E-25	4.4945816809855265E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1032	1464	1958	163	15	10534.644042617188	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	70.0	38.0	3.4054725520805564E-25	6.810945104161113E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	533	940	1259	117	9	7079.469726191406	7079.469726191406	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISE)[-12.01]HPTAEEAMDAKNRYEDPDKS.	1	33.0	30.0	1.1996938437441798E-23	7.108433654045165E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	532	939	1258	113	9	7079.469726191406	7079.469726191406	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISE)[-12.01]HPTAEEAMDAKNRYEDPDKS.	1	36.0	30.0	1.2214123175151144E-23	7.237120094067215E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1208	1693	2263	70	9	9782.848435289061	9782.813444333497	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	0	35.0	31.0	2.668529780790852E-26	7.738736364293471E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1041	1473	1970	115	12	10534.639869640629	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	54.0	36.0	4.220466451249809E-25	8.440932902499617E-25	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	471	878	1176	128	7	7825.946510359375	7825.946510359375	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLD(VCGKC)[-116.03]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	56.0	44.0	5.835086263713799E-24	1.2316061204053274E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1847	2634	3518	202	11	12160.525345085942	12160.430410581057	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	73.0	52.0	1.2563721667933563E-24	1.2563721667933563E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1538	2130	2846	153	12	9234.080989343749	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	53.0	46.0	7.7606987078923155E-25	1.5521397415784631E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1633	2259	3018	151	7	9175.75410709375	9175.646864133301	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	67.0	47.0	1.7016335709051118E-24	1.7016335709051118E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1960	3095	4132	100	8	10180.588413375	10180.52108593506	8330	gi|16767578|ref|NP_463193.1| chaperone Hsp10 [Salmonella typhimurium LT2]	10311.561582761231	2	97	M.SIRPLHDRVIVKRKEVESKSAGGIVLTGSAAGKSTRGEIIAVGKGRILDNGTVQPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA.	0	47.0	37.0	1.8333636831058812E-24	1.8333636831058812E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1263	1752	2342	131	13	10099.413442535157	10099.348730283204	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	0	44.0	37.0	1.8693499103594308E-24	1.8693499103594308E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1145	1618	2163	182	13	12762.063170726562	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	46.0	37.0	9.912955341104489E-25	1.9825910682208978E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1012	1442	1928	135	8	8113.319817	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	51.0	39.0	1.0346059123218614E-24	2.069211824643723E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	743	1159	1551	150	8	9518.3361315625	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	44.0	38.0	2.197818995569705E-24	2.197818995569705E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1560	2153	2876	120	10	12938.602174640626	12938.602174640626	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN(W)[-1.93]PTFPQLWVDGELV(GGC)[1.01]DIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	2	49.0	40.0	4.8490578815480283E-26	2.3226193855271587E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1324	1825	2439	124	9	9514.221189546875	9514.221189546875	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAA(I)[-.95]TESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	44.0	42.0	1.8291264619382477E-23	2.563062356084541E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	612	1021	1367	135	7	8528.073089750002	8528.029287534178	2900	gi|16764845|ref|NP_460460.1| putative outer membrane protein [Salmonella typhimurium LT2]	10682.22712536377	23	102	A.APGSCERVKSDIEQRIINNGVPADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ.	0	52.0	37.0	2.713641491282769E-25	3.2563697895393228E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1619	2245	2999	149	9	9191.71594348828	9191.64594348828	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAID(T)[16.00]ITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	1	68.0	47.0	1.1706687955236053E-23	3.42313649675131E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	93	472	635	184	10	11064.956792875002	11064.86583538574	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	0	54.0	41.0	1.1968637919146145E-25	3.8299641341267665E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	453	860	1152	131	11	8094.037378882812	8094.0223788828125	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(C)[152.05]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	49.0	35.0	1.7510837300591414E-23	4.351995068571472E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1016	1446	1934	135	8	8113.32030528125	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	48.0	37.0	3.047432903589056E-24	6.094865807178112E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1541	2133	2850	153	11	9234.09674923047	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	53.0	46.0	3.545353444102007E-24	7.090706888204014E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	741	1157	1548	147	8	9518.352733125	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	48.0	39.0	7.844009028704343E-24	7.844009028704343E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1540	2132	2848	153	11	9234.077279015626	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	48.0	44.0	4.533695974509323E-24	9.067391949018645E-24	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1557	2149	2871	145	10	9234.029989585939	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	49.0	41.0	5.9107174258743685E-24	1.1821434851748737E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1790	2507	3348	89	7	10678.642533234375	10678.578062253418	6388	gi|16766604|ref|NP_462219.1| hypothetical protein STM3309 [Salmonella typhimurium LT2]	10678.578062253418	1	98	.MTPQLTWTREADTLVLAGELDQDVLAPLWDARVEAMNGVTRIDLSQISRVDTGGLALLAHLVNQAKKQGNAVSLSGVNDKVYALAQLYNLPEDVLPRM.	0	39.0	38.0	7.497701361100807E-24	1.4995402722201614E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1558	2150	2872	153	11	9234.023568078126	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	54.0	41.0	7.737128139527348E-24	1.5474256279054696E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	337	737	988	160	11	9628.740410429687	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	54.0	37.0	7.919697522475392E-25	1.7423334549445862E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1740	2403	3210	112	7	11781.171228304687	11781.136228304687	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDV(L)[-.98]KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	1	38.0	38.0	1.5852679323239224E-22	1.8108637534623267E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1042	1474	1971	163	17	10534.671421769535	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	55.0	31.0	9.29064454006103E-24	1.858128908012206E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1290	1783	2383	111	6	7256.00464275	7255.987646298829	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	41.0	34.0	9.738314884168722E-24	1.9476629768337445E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1606	2224	2971	91	9	9306.7312263125	9306.687360959471	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	1	79	.MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	54.0	40.0	9.979643653100083E-24	1.9959287306200165E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1905	2763	3690	203	12	12201.566033718751	12201.61603371875	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQ)[42.01]IIEAVSAMSVMDVVELISAMEEKFGV(SA)[-.82]AAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	66.0	50.0	8.272050215653674E-23	2.2608141025996485E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1788	2490	3326	58	6	8095.221331890626	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	32.0	30.0	2.4474037153325353E-23	2.4474037153325353E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1709	2355	3146	179	8	11231.8585563125	11231.8485563125	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG(Q)[-.92]DVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	1	55.0	47.0	1.5285075094033437E-22	3.321754109636782E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1736	2394	3198	196	13	11782.248177773437	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	61.0	42.0	3.363815794190544E-23	3.363815794190544E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	473	880	1179	130	7	7825.943092390625	7825.943092390625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDL(NLD)[-116.03]VCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	52.0	41.0	1.5709707881718408E-22	3.366073030654062E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	431	837	1122	129	12	7941.968697109377	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	45.0	33.0	1.7967258632025988E-23	3.5934517264051975E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1031	1463	1956	115	6	7266.7536661875	7266.720510678711	3554	gi|16765178|ref|NP_460793.1| cold shock protein [Salmonella typhimurium LT2]	7397.761007504882	2	69	M.AKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPAAVNVTAI.	0	60.0	38.0	3.9957157061525795E-23	3.9957157061525795E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	972	1399	1871	114	6	6851.7180926562505	6851.6541196875005	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	46.0	40.0	2.0664229448172702E-23	4.1328458896345403E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1318	1819	2431	158	14	9515.224482398438	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	56.0	39.0	2.1671642703169452E-23	4.3343285406338903E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	174	561	754	104	8	6250.601164187499	6250.601164187499	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	45.0	37.0	3.682379641014045E-22	4.455847510816082E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1260	1749	2338	116	11	10099.436783597659	10099.348730283204	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	0	45.0	38.0	4.8799527144367235E-23	4.8799527144367235E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1009	1439	1924	135	8	8113.31444590625	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	49.0	35.0	2.485206156806843E-23	4.970412313613686E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	858	1278	1710	161	11	9699.302471183597	9699.242078977051	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	44.0	37.0	5.678232696935458E-23	5.678232696935458E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	474	881	1180	130	9	7825.950207871096	7825.950207871096	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.03]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	56.0	38.0	2.995168086564866E-22	6.417658809680496E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	410	816	1094	132	12	7941.990669765627	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	47.0	33.0	3.543633366085497E-23	7.087266732170994E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	973	1400	1872	112	6	6851.7180926562505	6851.6541196875005	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	41.0	38.0	3.608856167725102E-23	7.217712335450204E-23	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	415	821	1100	132	14	7942.0022408125	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	51.0	33.0	5.727506533123076E-23	1.1455013066246152E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	748	1164	1558	171	16	10278.70043625	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	48.0	33.0	1.2480098141989056E-22	1.2480098141989056E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	900	1321	1767	123	11	8323.103735132812	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	36.0	32.0	6.291152284344882E-23	1.2582304568689763E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	417	823	1103	132	14	7942.007367765625	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	53.0	34.0	6.341239687528461E-23	1.2682479375056921E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1022	1454	1944	99	6	7026.269570328124	7026.229570328125	270	gi|16763528|ref|NP_459143.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7273.337148862304	2	63	M.SDVTVV(NCPTCGK)[-116.07]PVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIASSGDQSDSDDWSEER.	1	42.0	38.0	9.97346393522125E-22	1.3474135456146708E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	938	1361	1820	110	7	7264.656912648437	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	55.0	39.0	5.7008322977338246E-24	1.8812746582521622E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	179	566	760	104	8	6250.603605593749	6250.603605593749	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	41.0	33.0	1.935136972869771E-21	2.343744505532401E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	419	825	1106	132	13	7942.012751675782	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	46.0	33.0	1.1951933709371137E-22	2.3903867418742274E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1646	2272	3035	140	6	9175.679595984375	9175.646864133303	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	0	52.0	45.0	2.399919743776189E-22	2.399919743776189E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	971	1398	1870	112	7	6851.713380132813	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	49.0	38.0	1.2518490692977745E-22	2.503698138595549E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1083	1535	2052	117	9	7315.786160476564	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	50.0	29.0	1.3709722596547263E-22	2.7419445193094525E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	339	739	991	160	13	9628.76260159375	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	46.0	35.0	1.2515786151946909E-23	2.878630814947789E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1602	2218	2963	59	9	8553.373599226561	8553.319486813965	2166	gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8684.359983640137	2	75	M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV.	0	26.0	26.0	3.3230953255352186E-22	3.3230953255352186E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1543	2135	2852	153	14	9234.108551601563	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	64.0	38.0	1.9832552808215335E-22	3.966510561643067E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	73	446	600	105	9	6311.3986137226575	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	40.0	30.0	4.1068654766366326E-22	4.1068654766366326E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	927	1350	1806	152	10	9169.743509562502	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	43.0	40.0	4.198696563381043E-22	4.198696563381043E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	62	435	586	97	9	6311.4074027851575	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	37.0	29.0	4.871585781097293E-22	4.871585781097293E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	565	972	1302	47	4	3110.647014796875	3110.6345579199224	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	92	121	A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	26.0	24.0	1.9510939630599604E-23	4.877734907649901E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	944	1367	1828	121	7	7264.63555034375	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	58.0	38.0	1.7653429413904037E-23	5.825631706588332E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	176	563	756	104	8	6250.601164187499	6250.601164187499	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	41.0	35.0	4.829319540893242E-21	5.843697161354836E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1079	1531	2047	121	8	7315.78843159375	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	53.0	29.0	3.1417090308505494E-22	6.283418061701099E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	342	742	995	160	10	9628.756841703127	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	43.0	36.0	3.310838518628861E-23	7.283844740983494E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1881	2718	3630	83	12	9876.393102609376	9876.304434018555	736	gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10106.413343625489	3	88	V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH.	0	44.0	30.0	3.9535016798170465E-23	7.511653191652389E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1076	1528	2043	121	8	7315.78159565625	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	56.0	29.0	4.01701366345114E-22	8.03402732690228E-22	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1289	1782	2382	116	6	7256.00464275	7255.987646298829	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	36.0	32.0	5.046866520580884E-22	1.0093733041161768E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	965	1391	1860	108	7	6851.6898815976565	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	42.0	37.0	5.743396935623569E-22	1.1486793871247137E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1620	2246	3000	147	8	9191.709242437499	9191.6492424375	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.(SLEV)[16.00]FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	1	60.0	45.0	4.97263364309654E-21	1.44996420247301E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1044	1476	1974	163	17	10533.657689859378	10533.652689859377	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEA(P)[-.94]IAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	1	52.0	31.0	6.957402680280627E-21	1.4893420207450834E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1714	2365	3159	137	7	11232.809557898438	11232.765684323733	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	36.0	35.0	7.928680187585619E-22	1.5857360375171239E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1072	1524	2038	120	8	7315.7664589375	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	53.0	29.0	8.693985310165622E-22	1.7387970620331244E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1542	2134	2851	153	10	9234.094076500001	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	43.0	35.0	8.74364287436377E-22	1.748728574872754E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1008	1438	1923	135	7	8113.309514875	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	44.0	38.0	8.807104897547852E-22	1.7614209795095703E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	854	1274	1704	113	12	9699.305265984378	9699.24207897705	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	34.0	27.0	1.7860784432505882E-21	1.7860784432505882E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1075	1527	2042	121	9	7315.788907058595	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	49.0	28.0	8.967218864424024E-22	1.793443772884805E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1127	1598	2136	151	13	9229.099470179688	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	40.0	30.0	9.368123807824056E-22	1.8736247615648113E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1045	1477	1975	167	17	10533.657689859378	10533.642689859376	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEA(P)[-.95]IAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	1	61.0	34.0	9.530288126094435E-21	2.0401088205272386E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1035	1467	1962	162	16	10534.6759511875	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	57.0	34.0	1.0280679978883275E-21	2.056135995776655E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1813	2583	3450	52	7	8103.05219065625	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	28.0	26.0	2.0607426326418602E-21	2.0607426326418602E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	407	813	1090	132	12	7958.00799475	7957.98799475	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIH(PNY)[16.01]VEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	41.0	32.0	9.417904077567988E-21	2.3241236581843655E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1003	1433	1916	135	11	8113.331009019531	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	53.0	36.0	1.2884445031918852E-21	2.5768890063837705E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1004	1434	1918	135	7	8113.32318675	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	42.0	36.0	1.4834500368952271E-21	2.9669000737904542E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1257	1746	2334	117	10	7256.035963554688	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	40.0	34.0	1.5856441090120002E-21	3.1712882180240005E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1850	2637	3522	202	13	12160.546193476563	12160.430410581057	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	56.0	42.0	3.512050771812729E-21	3.512050771812729E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1325	1826	2440	106	9	9514.221189546875	9514.161189546876	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQL(V)[-1.01]GFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	38.0	36.0	2.6506420490890385E-20	3.714210579117557E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1314	1815	2426	158	14	9515.282587867188	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	49.0	34.0	1.9015795806103173E-21	3.803159161220635E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1273	1764	2358	131	12	10098.416507109376	10098.416507109376	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.93]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	40.0	35.0	2.4840030395351017E-20	4.265459764858255E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1737	2395	3199	195	13	11782.248177773437	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	65.0	41.0	4.771874631670125E-21	4.771874631670125E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1262	1751	2340	121	12	10098.453128203126	10098.453128203126	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.90]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	38.0	32.0	2.988759902004887E-20	5.14210739766624E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1266	1755	2346	149	11	10098.412247464847	10098.412247464847	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK(D)[-.94]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	48.0	41.0	3.2099091727956946E-20	5.5109049470427195E-21	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1415	1957	2615	126	10	9113.83472408594	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	36.0	31.0	5.557887527391173E-21	1.1115775054782347E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	747	1163	1556	171	17	10278.707564546878	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	45.0	29.0	1.1927081297527648E-20	1.1927081297527648E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	197	592	795	104	9	6250.604691410157	6250.604691410157	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	33.0	27.0	1.0376321527859634E-19	1.2567299839500927E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1091	1545	2066	151	13	9229.079633753907	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	42.0	31.0	6.360136683705149E-21	1.2720273367410299E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	476	883	1183	130	11	7825.957445421876	7825.957445421876	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.02]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	46.0	33.0	6.102762758927579E-20	1.2881043442352039E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	462	869	1164	130	8	7825.9345956875	7825.9345956875	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(C)[-116.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	52.0	38.0	6.276405135087288E-20	1.324754875791169E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	450	857	1148	134	9	8094.003468968751	8094.003468968751	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(C)[152.03]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	47.0	36.0	5.2911745149783316E-20	1.334362245521229E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	746	1162	1555	150	16	10278.698483125	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	40.0	30.0	1.3461210785625537E-20	1.3461210785625537E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1005	1435	1919	135	7	8113.32318675	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	41.0	36.0	8.021357331124984E-21	1.6042714662249968E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1071	1523	2036	118	9	7315.779019363283	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	46.0	28.0	9.381616508604941E-21	1.8763233017209882E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1603	2221	2967	89	11	8553.37589292969	8553.319486813965	2166	gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8684.359983640137	2	75	M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV.	0	43.0	30.0	2.0438629802328832E-20	2.0438629802328832E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	63	436	587	103	9	6311.4074027851575	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	41.0	30.0	2.1582198202094016E-20	2.1582198202094016E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	369	771	1034	150	10	9044.934587601565	9044.898699002684	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	42.0	34.0	2.3094743197469645E-20	2.3094743197469645E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1007	1437	1922	135	10	8113.311856796875	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	46.0	32.0	1.2635780522675114E-20	2.5271561045350227E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	71	444	598	99	8	6311.39752790625	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	40.0	29.0	2.6445925707407242E-20	2.6445925707407242E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	649	1059	1418	149	11	8970.932021308598	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	36.0	30.0	3.08697641695778E-20	3.08697641695778E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	66	439	591	105	8	6311.39752790625	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	41.0	30.0	3.4043178791524156E-20	3.4043178791524156E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	752	1168	1563	171	18	10278.711519015624	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	44.0	29.0	3.505755158911636E-20	3.505755158911636E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	749	1165	1559	166	17	10278.703414156253	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	42.0	28.0	4.0506837361923016E-20	4.0506837361923016E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1636	2262	3022	153	13	9262.089844625001	9262.029844625002	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MNKSQLIEKI)[28.02]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	68.0	39.0	3.283860848503514E-19	4.1724349604515243E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	906	1327	1775	61	10	8323.093921289063	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	28.0	24.0	2.293617163726046E-20	4.587234327452092E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	745	1161	1554	117	15	10278.702951507812	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	34.0	27.0	4.884806957833964E-20	4.884806957833964E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1313	1814	2424	67	12	9515.226217015628	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	29.0	25.0	2.779436956904911E-20	5.558873913809823E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1293	1786	2387	115	10	7256.053663750001	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	42.0	33.0	3.040298357590814E-20	6.080596715181627E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1240	1729	2311	72	9	6478.506700425782	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	29.0	24.0	3.270469242631588E-20	6.540938485263176E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	826	1244	1664	86	13	10658.609630421875	10658.552923398438	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	124	A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK.	0	40.0	29.0	1.6806006748123076E-21	6.72240269924923E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1088	1542	2062	150	13	9229.089948695313	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	43.0	34.0	3.776494733532414E-20	7.552989467064828E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1640	2266	3027	154	12	9262.080763203128	9262.025763203128	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.M(NKSQLIEKIA)[28.02]AGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	48.0	40.0	6.977926153821833E-19	8.987872274216166E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1092	1546	2067	150	14	9229.084137539063	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	42.0	29.0	4.669002946314764E-20	9.338005892629528E-20	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1015	1445	1932	135	10	8113.321622421875	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	45.0	31.0	5.939671182599811E-20	1.1879342365199622E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	151	538	723	57	5	4482.195779546877	4482.182546811524	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	46	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F	0	29.0	23.0	1.930929996753097E-21	1.216485897954451E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	463	870	1166	130	8	7825.9326425625	7825.9326425625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSCGN)[-116.04]VIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	50.0	36.0	5.978238976636864E-19	1.2809397311251027E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1284	1777	2375	120	8	7256.04624309375	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	37.0	34.0	7.955912411260726E-20	1.5911824822521452E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1154	1627	2175	107	11	12763.037683664066	12762.912683664064	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	2	117	M.DKKSARIRRATRARRKLKELGATRLV(VHRTPRHIYAQVIA)[131.99]PNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	1	39.0	33.0	2.8615902437978874E-19	1.6586465836815714E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	838	1256	1680	165	8	10406.187310187499	10406.1723101875	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV(P)[34.04]VMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	47.0	41.0	7.16736202528011E-21	1.7070716490070623E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	442	849	1138	131	11	8094.011866187499	8094.011866187499	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(C)[152.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	47.0	30.0	7.939071885916794E-19	1.9731096293937575E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1078	1530	2046	118	9	7315.79549885547	7315.736898618164	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	52.0	27.0	1.0375003321142409E-19	2.0750006642284817E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	886	1307	1748	107	11	10060.486955496095	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	35.0	29.0	2.1069778387856748E-19	2.1069778387856748E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	411	817	1095	132	13	7941.999262906251	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	46.0	29.0	1.5745610614419723E-19	3.1491221228839445E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1017	1447	1935	133	10	8113.319181015625	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	43.0	30.0	1.6614034639090731E-19	3.3228069278181462E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	198	593	796	104	9	6250.604691410157	6250.604691410157	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	35.0	27.0	2.903598687139412E-18	3.516698592741975E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	940	1363	1823	121	7	7264.664603078125	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	58.0	37.0	1.0919378365133646E-20	3.821782427796776E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1879	2712	3622	40	12	9876.398961984376	9876.304434018555	736	gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10106.413343625489	3	88	V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH.	0	28.0	20.0	2.1311099590599056E-20	3.83599792630783E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1252	1741	2327	118	10	7256.045729179688	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	38.0	31.0	2.0542133554735563E-19	4.1084267109471127E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1269	1759	2351	114	13	10098.4446315	10098.4146315	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIE(EG)[-.93]LINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	35.0	30.0	2.4405414958192456E-18	4.1972893053640557E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1285	1778	2376	115	6	7256.043461109375	7255.987646298829	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	33.0	28.0	2.1280036787286907E-19	4.2560073574573815E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1338	1852	2475	54	11	9515.24795834766	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	26.0	24.0	2.157089555434601E-19	4.314179110869202E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1013	1443	1930	135	12	8113.324892687501	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	47.0	33.0	2.19945681226027E-19	4.39891362452054E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	170	557	748	104	9	6250.607437992188	6250.607437992188	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	34.0	29.0	3.654737239847669E-18	4.430491164499691E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	134	519	698	74	8	4461.53795621875	4461.53295621875	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	40.0	30.0	1.3972476235729908E-20	4.890366682505468E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	76	450	606	140	8	11096.894726125	11096.894726125	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPD(GSTMNHD)[32.03]GMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	46.0	37.0	2.285296365440037E-20	5.498437316068482E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	196	591	794	104	9	6250.604691410157	6250.604691410157	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	41.0	30.0	5.0305813087688535E-18	6.092797288956792E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	968	1394	1864	114	7	6851.70056275	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	43.0	33.0	3.2870238113765863E-19	6.574047622753173E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	65	438	590	103	9	6311.4008109882825	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	38.0	28.0	7.038889019308216E-19	7.038889019308216E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1279	1771	2367	107	10	7256.017653007813	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	31.0	28.0	3.7641757903439382E-19	7.5283515806878765E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1255	1744	2331	120	8	7256.04477825	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	39.0	33.0	4.2125677304766937E-19	8.425135460953387E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1242	1731	2314	71	9	6478.510545640625	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	29.0	23.0	4.448377112998218E-19	8.896754225996437E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1099	1553	2076	148	14	9229.096100429688	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	46.0	31.0	4.631494810271374E-19	9.262989620542749E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1544	2136	2854	153	14	9234.05471859375	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	57.0	35.0	4.828489297667366E-19	9.656978595334732E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	832	1250	1672	140	13	10406.176076671874	10406.176076671874	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISN(NNG)[34.04]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	48.0	35.0	4.122084008556988E-20	9.820261718532445E-19	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	286	686	920	57	5	4629.270351507814	4629.250951962891	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	47	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYAF.T	0	31.0	24.0	1.5085247342832163E-20	1.025796819312587E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	966	1392	1862	108	8	6851.699146125	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	41.0	31.0	5.261988560249558E-19	1.0523977120499116E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	430	836	1120	132	14	7942.023603117187	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	44.0	29.0	5.457645079900519E-19	1.0915290159801039E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	165	552	742	104	11	6250.613088628906	6250.608088628906	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	34.0	25.0	8.9753974587111E-18	1.1101041291122295E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	67	440	592	105	8	6311.39752790625	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	38.0	27.0	1.1536550237166602E-18	1.1536550237166602E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1312	1813	2423	158	14	9516.2456005625	9516.2456005625	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDA(V)[1.07]QLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	49.0	34.0	8.119326511585613E-18	1.1881088934534576E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	344	744	998	151	12	9628.751078765625	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	43.0	33.0	5.487708218717723E-20	1.207295808117899E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	449	856	1147	134	12	8094.009473	8094.009473	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(CGNVIKTH)[152.03]STVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	44.0	32.0	4.9316987346354154E-18	1.2437073430773555E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	412	818	1096	132	13	7941.999262906251	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	45.0	30.0	6.393341978266999E-19	1.2786683956533998E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	135	520	699	74	7	4461.537053507813	4461.532053507813	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	37.0	32.0	3.6734179450656333E-20	1.2851078614225036E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	364	766	1027	142	11	9044.930912675782	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	36.0	33.0	1.2926098092412376E-18	1.2926098092412376E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1180	1660	2219	61	15	12218.797509617187	12218.76931591553	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	22.0	19.0	6.6827836755416205E-19	1.3365567351083241E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1253	1742	2328	120	9	7256.045253714845	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	38.0	32.0	6.962771560171934E-19	1.3925543120343869E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1637	2263	3023	154	12	9262.100538593753	9262.020538593753	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.M(NKSQLI)[28.01]EKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	45.0	36.0	1.126298472102976E-17	1.4295091799245872E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	908	1329	1778	103	10	10060.48098686719	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	32.0	28.0	1.4870650472296508E-18	1.4870650472296508E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	169	556	747	104	11	6250.609731695312	6250.609731695312	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	36.0	28.0	1.2634277970818839E-17	1.5612151268288725E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1070	1522	2035	118	9	7315.779019363283	7315.754019363283	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.(MSK)[42.01]IKGNVK(WF)[-173.03]NESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	1	48.0	28.0	7.851162304824866E-18	2.080901326190692E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	964	1390	1859	102	7	6851.6898815976565	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	39.0	31.0	1.0987505277077752E-18	2.1975010554155503E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	643	1053	1410	149	12	8970.919679390629	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	38.0	32.0	2.948600662948791E-18	2.948600662948791E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	891	1312	1755	42	10	8323.092700585938	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	25.0	23.0	1.6614681550121844E-18	3.3229363100243688E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	48	421	567	73	8	4416.4613110625	4416.4613110625	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKK(LCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	35.0	26.0	6.859560611060985E-17	3.40470946659175E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	79	455	612	163	9	11078.895709499997	11078.895709499997	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNN(N)[14.03]DINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	40.0	36.0	1.4145371747912914E-19	3.660576201894681E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1258	1747	2335	120	9	7256.034816703126	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	40.0	31.0	1.8630583042722506E-18	3.726116608544501E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	759	1175	1572	111	13	10277.701939542969	10277.701939542969	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.96]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	1	35.0	27.0	2.3384162829913627E-17	4.0576285617624916E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	343	743	996	153	8	9628.756501124999	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	40.0	32.0	2.0459056797505997E-19	4.500992495451319E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	866	1286	1720	104	13	8948.881467566407	8948.881467566407	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAE)[42.01]GVQEIDYKDIATLKNYITES(GKIVPSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ.	1	36.0	30.0	3.17955527709024E-17	5.125637341347665E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1667	2295	3066	101	14	10947.962508914063	10947.867208676758	6236	gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2]	11078.90770550293	2	101	M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR.	0	37.0	26.0	5.363911004435289E-18	5.363911004435289E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	852	1272	1702	126	12	9699.305265984378	9699.24207897705	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	34.0	26.0	5.392971045684018E-18	5.392971045684018E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	441	848	1136	134	12	8094.009473	8094.009473	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNV(I)[152.03]KTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	29.0	2.3646659960471253E-17	5.963366015354452E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	173	560	752	104	10	6250.609195195313	6250.609195195313	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	34.0	27.0	4.8876963908207124E-17	6.039716363943214E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1265	1754	2344	120	7	7256.028250539062	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	36.0	33.0	3.1397043720742612E-18	6.2794087441485224E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	970	1396	1867	109	8	6851.69963440625	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	46.0	31.0	3.3081225229256807E-18	6.616245045851361E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1552	2144	2864	153	14	9234.07522640625	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	54.0	31.0	3.552710913313274E-18	7.105421826626548E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	182	569	764	104	9	6250.606888675782	6250.606888675782	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	34.0	28.0	6.43298876174866E-17	7.94559453646907E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1806	2557	3415	94	12	15998.60168175	15998.482710080567	802	gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2]	15998.482710080567	1	156	.MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA.	0	37.0	31.0	4.008923629713751E-18	8.017847259427502E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1095	1549	2071	152	15	9229.086383023436	9229.012678342284	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	37.0	27.0	4.208501496066378E-18	8.417002992132756E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1207	1692	2262	97	10	9782.830295031252	9782.813444333497	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	0	34.0	27.0	3.4072956451706414E-19	8.858968677443668E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	338	738	990	160	11	9628.751824003906	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	50.0	33.0	4.120293693480513E-19	9.064646125657129E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	762	1178	1576	140	16	10278.6896940625	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	36.0	26.0	9.103656331045775E-18	9.103656331045775E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1718	2373	3170	122	7	11231.840563757813	11231.830563757814	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQ(LN)[-.94]GQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	1	38.0	33.0	4.483644782906839E-17	9.734484294329543E-18	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1412	1954	2611	151	8	9113.770784875	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	33.0	31.0	5.355535342661386E-18	1.0711070685322772E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1618	2244	2998	144	8	9191.709242437499	9191.709242437499	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SL(E)[16.06]VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQERLQALLGRMEEV.	1	51.0	40.0	3.914888890404005E-17	1.1415376951458408E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1261	1750	2339	140	12	10098.453128203126	10098.433128203127	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAA(RRARQMQVGGKD)[-.92]PLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	35.0	30.0	6.768282101384758E-17	1.1644707037081247E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	909	1330	1779	108	10	10060.48098686719	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	31.0	28.0	1.2529422410921068E-17	1.2529422410921068E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1322	1823	2436	158	15	9515.220685402346	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	48.0	31.0	6.65373371634392E-18	1.330746743268784E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	440	847	1135	123	13	8094.010253640625	8094.010253640625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSC)[152.03]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	34.0	26.0	5.3568028612239986E-17	1.350912821809785E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	60	433	583	104	11	6311.403104691406	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	41.0	26.0	1.3824758451489046E-17	1.3824758451489046E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1291	1784	2384	114	10	7257.010084648438	7257.010084648438	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELL(N)[1.02]LLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	39.0	31.0	1.0485041391074035E-16	1.394855844322691E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1205	1690	2259	96	11	9782.907552722658	9782.813444333497	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	0	34.0	26.0	4.623393183237358E-19	1.4794858186359545E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1604	2222	2968	81	12	8553.371180406251	8553.319486813964	2166	gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8684.359983640137	2	75	M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV.	0	33.0	27.0	1.6241382729448124E-17	1.6241382729448124E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	373	775	1039	146	11	9044.906071367188	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	39.0	31.0	1.779278866036086E-17	1.779278866036086E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	131	516	694	74	7	4461.536626261719	4461.536626261719	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	39.0	32.0	5.70163688591132E-19	1.9946596043892967E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1098	1552	2075	153	16	9229.085576749998	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	37.0	27.0	1.1726569981074147E-17	2.3453139962148293E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1105	1564	2091	148	13	9229.039960902344	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	36.0	29.0	1.175855259478389E-17	2.351710518956778E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1283	1776	2374	115	9	7256.048549613282	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	39.0	31.0	1.2315569851374842E-17	2.4631139702749683E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1599	2215	2959	47	10	8553.386220687502	8553.319486813965	2166	gi|16764476|ref|NP_460091.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8684.359983640137	2	75	M.PTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWEEGSDEVLIKAFEKTDKDSLFWGEQIIERKNV.	0	26.0	23.0	2.814005474739997E-17	2.814005474739997E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	739	1155	1546	128	13	9518.345466894534	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	33.0	26.0	2.8398601752032604E-17	2.8398601752032604E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1248	1737	2322	116	10	7256.047560234376	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	37.0	29.0	1.4406106098680262E-17	2.8812212197360523E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1317	1818	2430	158	15	9514.238324562502	9514.238324562502	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGF(GTFKVNHRAERTGRNPQTGKEIKIAAA)[-.93]NVPAFVSGKALKDAVK.	1	48.0	34.0	2.1517354298223854E-16	2.980759036983391E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	171	558	750	104	12	6250.615273078125	6250.610273078126	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	29.0	23.0	2.6864932882034515E-16	3.262698081456988E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	893	1314	1758	114	11	8323.102392359375	8323.048940854493	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	28.0	25.0	1.663533090303614E-17	3.327066180607228E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1730	2387	3188	145	15	11782.214643839843	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	38.0	28.0	3.4901001395644045E-17	3.4901001395644045E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	530	937	1255	75	10	7079.475938960936	7079.475938960936	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPD(SLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS.	1	29.0	24.0	6.101687677532251E-16	3.5567552191577876E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1559	2152	2875	153	15	9233.08906857031	9233.08906857031	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDD(V)[-.92]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	58.0	33.0	2.5339771640073185E-16	3.804990254934466E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1668	2296	3067	89	14	10947.962508914063	10947.867208676758	6236	gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2]	11078.90770550293	2	101	M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR.	0	31.0	23.0	3.8085950368329186E-17	3.8085950368329186E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	452	859	1151	121	9	8094.03148410547	8094.011484105469	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATC(SC)[152.04]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	34.0	30.0	1.6634718338985686E-16	4.195049710340731E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	168	555	746	104	10	6250.606143437501	6250.606143437501	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	33.0	26.0	3.710465741381641E-16	4.580821902940297E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1250	1739	2324	120	8	7256.04477825	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	37.0	32.0	2.3672338806990235E-17	4.734467761398047E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1259	1748	2336	119	12	7256.040820734377	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	45.0	28.0	2.3915138790935397E-17	4.7830277581870793E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	409	815	1092	132	12	7958.00799475	7957.98299475	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.(MKKGIH)[16.01]PNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	43.0	28.0	1.9858653664689172E-16	4.9006622303284515E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	853	1273	1703	81	14	8948.899643226561	8948.874643226562	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITESGK(I)[-85.03]VPSRITGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ.	1	29.0	23.0	3.0437356517731937E-16	4.90668780830165E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1857	2652	3542	52	9	12290.532072585936	12290.532072585936	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEA(VSA)[-.94]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	25.0	23.0	1.8473886219985016E-16	5.306933846806621E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	137	522	702	74	8	4461.53990934375	4461.53490934375	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	34.0	26.0	1.752936498069632E-18	5.980701345681457E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1181	1661	2220	82	13	12218.8160899375	12218.769315915528	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	23.0	21.0	3.0259987672940984E-17	6.051997534588197E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1270	1761	2354	125	10	10098.435697781253	10098.415697781253	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDP(L)[-.93]VPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	34.0	31.0	3.600482632465923E-16	6.189196358774723E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1913	2785	3719	63	9	12201.453828515625	12201.453828515625	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQII)[42.01]EAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAA(G)[-.99]PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	29.0	26.0	2.542795188104816E-16	6.572965466044286E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1937	2867	3828	38	9	9972.992058046875	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	21.0	21.0	3.346866001919926E-17	6.693732003839852E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1122	1589	2124	153	15	9229.066241421873	9229.012678342284	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	35.0	28.0	3.540132012834045E-17	7.08026402566809E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	484	891	1194	94	10	7825.924438218752	7825.924438218752	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLD(VCGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	37.0	29.0	3.3550930637826763E-16	7.08156309115858E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1311	1812	2422	59	13	9515.228767675784	9515.172773557128	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	26.0	23.0	3.6377412108601056E-17	7.275482421720211E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1648	2275	3039	81	13	11211.828890179688	11211.739576535645	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	4	103	M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	0	34.0	25.0	1.914591054225203E-18	7.466905111478292E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1742	2405	3212	95	14	11782.220882242187	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	39.0	29.0	7.601651167691631E-17	7.601651167691631E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	24	396	534	75	10	4532.531088648438	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	29.0	19.0	4.2160516586599463E-17	8.432103317319893E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	868	1288	1723	147	11	8948.883690464843	8948.883690464843	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNYITESGKIV(PSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ.	1	39.0	31.0	5.373893073356568E-16	8.549056498046361E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1093	1547	2068	150	12	9229.081477624999	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	37.0	28.0	4.320954301666009E-17	8.641908603332018E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1687	2319	3098	55	16	17715.585744750002	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	23.0	22.0	8.978104954337262E-17	8.978104954337262E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	133	518	696	74	7	4461.536626261719	4461.536626261719	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	34.0	28.0	2.8388154717555906E-18	9.931306849473563E-17	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1506	2086	2787	38	14	10600.363719960937	10600.277429776612	5878	gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10600.277429776612	1	88	.MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI.	0	20.0	16.0	5.3299120506839375E-17	1.0659824101367875E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1175	1655	2212	128	17	12218.855894628909	12218.769315915528	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	31.0	24.0	5.819744229127929E-17	1.1639488458255859E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	138	523	703	74	6	4461.5390804843755	4461.529080484375	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(AK)[14.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	38.0	31.0	3.7647779771607744E-18	1.3182758981867594E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	311	711	954	140	15	8420.766552699219	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	34.0	24.0	1.375594229915778E-16	1.375594229915778E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1419	1961	2620	151	8	9113.805941125	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	33.0	31.0	7.003264603610989E-17	1.4006529207221977E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1321	1822	2435	143	11	9514.206637546878	9514.181637546877	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.(MN)[-.99]KTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	34.0	29.0	1.0195014399332894E-15	1.427615347121337E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	367	769	1031	150	10	9043.970232132815	9043.955232132814	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVK(R)[-.94]FGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	1	39.0	32.0	1.4085205549256944E-15	1.6479947991817997E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	206	603	810	104	11	6250.613760015624	6250.608760015625	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	28.0	21.0	1.442393109502163E-15	1.783995142306844E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	132	517	695	74	8	4461.5355148125	4461.5355148125	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	36.0	26.0	5.2602679429209714E-18	1.7930652466304527E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1249	1738	2323	120	8	7256.04477825	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	37.0	31.0	9.303716913902228E-17	1.8607433827804455E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1239	1728	2310	59	9	6478.506700425782	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	23.0	20.0	9.774280589722426E-17	1.9548561179444852E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1089	1543	2063	152	12	9229.087336999999	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	34.0	28.0	9.821566949665512E-17	1.9643133899331024E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	408	814	1091	132	13	7958.00645605469	7957.98145605469	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.(MKKGIH)[16.01]PNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	29.0	8.067926511937486E-16	2.0188371768601622E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1210	1695	2266	39	9	9782.875901109373	9782.813444333497	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	0	22.0	20.0	7.595397966639977E-18	2.0507574509927938E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	420	826	1107	132	14	7942.016767179687	7941.976240354003	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	45.0	28.0	1.0298036964252194E-16	2.0596073928504389E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1535	2126	2840	66	11	9250.098581285158	9250.018581285158	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MN)[16.01]KSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	22.0	21.0	5.822141394995731E-16	2.1502226742881963E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	757	1173	1570	156	19	10278.694782566408	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	32.0	22.0	2.158854890451495E-16	2.158854890451495E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1326	1827	2442	158	16	9515.243743875	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	45.0	29.0	1.1308799138418524E-16	2.2617598276837047E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1798	2533	3383	112	7	8795.453047632813	8795.422834592286	816	gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2]	8926.463331418458	2	80	M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE.	0	32.0	29.0	2.6008028066697344E-16	2.6008028066697344E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1651	2278	3043	178	15	11211.768012496093	11211.739576535645	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	4	103	M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	0	44.0	36.0	7.935104720088515E-18	2.7772866520309803E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1106	1565	2092	67	6	7445.8090819687495	7445.8090819687495	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.MSKIKGNVKWFNESKGFGF(I)[1.04]TPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[-2.00].	2	34.0	29.0	2.872190901761732E-17	2.780073390604787E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1306	1805	2412	57	15	10614.607104347659	10614.512960629881	1892	gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2]	10614.512960629883	1	94	.MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG.	0	20.0	16.0	1.4558838277470011E-16	2.9117676554940023E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	81	457	615	178	7	11080.895490992187	11080.895490992187	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINT(N)[16.03]GNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	39.0	32.0	1.209171918289018E-17	3.2040833092162123E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1315	1816	2427	90	11	9515.268099949222	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	30.0	27.0	1.60336600780381E-16	3.20673201560762E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	859	1279	1711	152	16	9699.311562375	9699.242078977051	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	38.0	25.0	3.233454961383467E-16	3.233454961383467E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	38	411	554	73	8	4416.46765871875	4416.46765871875	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKK(LCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	34.0	25.0	7.311347529461291E-15	3.535901657310284E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1297	1792	2395	110	11	7256.023804742187	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	40.0	27.0	1.8904551593807659E-16	3.7809103187615317E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1641	2267	3028	143	13	9261.084534566407	9261.074534566407	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MNKSQLIEKIAAGADISKAAAGRAL)[28.00]DAIIASVTESLKEGDD(V)[-.94]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	2	58.0	37.0	2.1748835064212032E-17	4.0322256636547E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1090	1544	2064	147	14	9228.085236171875	9228.085236171875	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFN(PI)[-.93]ASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	1	41.0	29.0	2.7009020785795737E-15	4.0544719424404685E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1100	1555	2079	153	16	9229.080693937498	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	36.0	25.0	2.1294865809994236E-16	4.258973161998847E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	778	1195	1599	84	15	10278.701120453125	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	29.0	20.0	4.318512690999098E-16	4.318512690999098E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1421	1963	2623	90	10	9113.818854945315	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	26.0	23.0	2.1816005007977244E-16	4.363201001595449E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	469	876	1174	130	12	7825.950901843751	7825.930901843752	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	41.0	30.0	2.097523556312461E-15	4.49430220295902E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	92	471	634	184	11	11064.960136992187	11064.865835385743	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	0	41.0	32.0	1.3974149003772542E-17	4.611469171244939E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1276	1768	2363	94	9	10099.406230617184	10099.348730283205	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	0	28.0	23.0	5.443391643745968E-16	5.443391643745968E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	98	480	646	89	9	5365.870345339845	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	31.0	22.0	2.750121158739245E-16	5.50024231747849E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	641	1051	1407	149	15	8970.935204906253	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	33.0	28.0	5.762524685871073E-16	5.762524685871073E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	46	419	564	73	10	4416.470928984375	4416.470928984375	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.04]IVKRDGVIRVICSAEPKHKQRQG.	1	26.0	20.0	1.2023905285008905E-14	5.814980953003263E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	254	652	875	47	4	2823.5051790937496	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	26.0	22.0	7.61832613159351E-18	6.094660905274809E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	136	521	700	74	9	4461.538492718751	4461.5334927187505	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	31.0	21.0	1.7786463527662155E-17	6.225262234681755E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	309	709	951	140	18	8420.733921476563	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	33.0	23.0	6.528376109381779E-16	6.528376109381779E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	445	852	1142	134	14	8094.0000479531245	8094.0000479531245	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSC(G)[152.02]NVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	41.0	29.0	2.826378680534119E-15	7.02444198895309E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	43	416	560	73	7	4416.466023585937	4416.466023585937	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKK(LCRNC)[-116.05]KIVKRDGVIRVICSAEPKHKQRQG.	1	28.0	24.0	1.6634087495761996E-14	8.044549559039054E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	26	398	536	75	9	4532.527195214844	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	25.0	19.0	4.0524801840494636E-16	8.104960368098927E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	705	1120	1499	71	9	6509.640863699219	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	30.0	23.0	4.1295274699277046E-16	8.259054939855409E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1267	1757	2348	164	10	10098.404569851566	10098.404569851566	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVI(ALREIEEGLI)[-935.63]NNQILDV(R)[934.69]ERQEQQEQEAAELQAVTAIAEGRR.	2	50.0	39.0	2.3088954365647986E-17	8.830826569111994E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	464	871	1167	121	9	7825.929333847658	7825.924333847658	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSC)[-116.05]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	42.0	28.0	4.1935197019612735E-15	8.985331667888565E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	862	1282	1715	144	14	8948.899643226561	8948.899643226561	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAEG)[42.01]VQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKY)[-85.00]QRQLRRAIKRARYLSLLPYTDRHQ.	1	35.0	27.0	5.6566280048449756E-15	9.118829899469448E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	744	1160	1552	145	9	9518.326780367188	9518.289663510745	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	30.0	27.0	9.598749646459691E-16	9.598749646459691E-16	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1804	2553	3410	107	13	15998.6051479375	15998.482710080565	802	gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2]	15998.482710080567	1	156	.MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA.	0	49.0	30.0	5.079097055846831E-16	1.0158194111693661E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	147	534	718	55	5	4482.2000520078145	4482.182546811524	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	46	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F	0	25.0	21.0	1.7298677588642207E-17	1.089816688084459E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1097	1551	2074	152	15	9229.088214078123	9229.012678342284	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	36.0	25.0	5.715276674784357E-16	1.1430553349568713E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	851	1271	1700	94	13	8948.887021765626	8948.887021765626	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITES(GKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.02]PYTDRHQ.	1	27.0	22.0	7.247224935531624E-15	1.152924603861006E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1294	1788	2390	118	11	7256.064759332031	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	41.0	27.0	5.787284633457995E-16	1.157456926691599E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	190	584	784	104	13	6250.613490242187	6250.608490242187	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.AKGIREK(IKLV)[14.03]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	27.0	22.0	9.82757112193793E-15	1.215503528595163E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1251	1740	2326	120	7	7256.045340382812	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	33.0	31.0	6.195054281035743E-16	1.2390108562071485E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	25	397	535	75	8	4532.52623146875	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	27.0	21.0	6.548362333444835E-16	1.309672466688967E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	297	697	935	140	15	8420.735424769531	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	31.0	23.0	1.3156935240802829E-15	1.3156935240802829E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	84	460	619	176	10	11079.915288968752	11079.915288968752	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNT(MCKD)[15.05]GRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	46.0	35.0	5.024386374820283E-17	1.3247879277224477E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	39	412	555	73	8	4416.46765871875	4416.46765871875	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	28.0	21.0	2.800694698148141E-14	1.3544672832056994E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	148	535	719	70	5	4482.2000520078145	4482.182546811524	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	46	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYA.F	0	29.0	23.0	2.208556787953174E-17	1.3913907764104996E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1108	1568	2096	151	12	9229.070491296874	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	34.0	28.0	7.248048008447354E-16	1.4496096016894708E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	103	485	652	89	10	5365.868745609376	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	27.0	20.0	7.379522449837525E-16	1.475904489967505E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	562	969	1298	51	5	3110.6507251250005	3110.6345579199224	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	92	121	A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	26.0	22.0	6.370213419677703E-17	1.5288512207226488E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1869	2667	3562	96	13	12290.57633284375	12290.46633284375	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLK(EAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK)[-1.00].	1	32.0	27.0	5.3329603594124585E-15	1.5355265657957407E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	455	862	1155	86	9	8094.015553929688	8094.015553929688	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(C)[152.04]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	36.0	28.0	6.401497525066438E-15	1.5909739313048554E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	824	1242	1662	136	11	10657.604407031251	10657.604407031251	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	121	A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATIT(GPQQELIKTRPAKRNEQDK)[297.27]TQLIIPLEQPLKSGAYTVDWHVV(SVDGHKTKGKYTF)[15.98].S	2	65.0	52.0	3.8579197584508917E-23	1.6096358409449982E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	33	405	546	75	10	4532.5268161875	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	24.0	18.0	8.350658350844166E-16	1.6701316701688333E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	465	872	1168	119	8	7825.9326425625	7825.9326425625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(C)[-116.04]SCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	42.0	31.0	8.342918552377855E-15	1.7876126881253424E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	21	393	530	75	9	4532.526096582032	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	28.0	21.0	9.003106298253735E-16	1.800621259650747E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1001	1431	1914	129	10	8113.33260875	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	37.0	25.0	9.9354081045781E-16	1.98708162091562E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	57	430	579	105	10	6327.401173382812	6327.401173382812	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.(AV)[16.01]QQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	39.0	26.0	1.0049404649303679E-14	2.0135419151610286E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1254	1743	2330	120	7	7256.043631398437	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	32.0	30.0	1.0244315814196829E-15	2.0488631628393657E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	105	487	655	89	10	5365.866304203126	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	26.0	20.0	1.0540085963648652E-15	2.1080171927297305E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1247	1736	2320	119	9	7256.040859183595	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	35.0	26.0	1.2227564912466805E-15	2.445512982493361E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1295	1789	2391	120	7	7256.05986675	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	32.0	31.0	1.4165511237480936E-15	2.8331022474961873E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	28	400	539	75	6	4532.525402609375	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	24.0	21.0	1.488332506281966E-15	2.976665012563932E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	55	428	576	105	11	6326.395841507812	6326.395841507812	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AV(QQNKPTRSKRGM)[15.00]RRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	33.0	20.0	2.2881692088987783E-14	2.9954215098311283E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	753	1169	1564	109	18	10278.711519015624	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	27.0	18.0	3.0346177797342048E-15	3.0346177797342048E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1085	1537	2055	95	9	7446.834067933595	7446.7773954443355	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	38.0	22.0	1.526291075544319E-15	3.052582151088638E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	30	402	542	75	5	4532.529626851564	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	20.0	17.0	1.6523418113951666E-15	3.304683622790333E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	693	1108	1483	106	9	6378.609118976564	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	37.0	25.0	3.307022738555746E-15	3.307022738555746E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	104	486	654	89	8	5365.8688933124995	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	29.0	25.0	1.6867465307725947E-15	3.3734930615451893E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1575	2172	2902	58	13	9234.092695277344	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	25.0	18.0	1.692135833339712E-15	3.384271666679424E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	646	1056	1414	149	12	8970.917482125004	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	35.0	27.0	3.548505867459414E-15	3.548505867459414E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1654	2281	3047	146	14	11211.84663859375	11211.739576535645	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	4	103	M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	0	33.0	27.0	1.0126571396153103E-16	3.645565702615117E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1858	2653	3543	66	9	12290.532072585936	12290.522072585936	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAA(AAV)[-.95]AVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	25.0	22.0	1.2739119611439335E-14	3.659525897227284E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1178	1658	2216	60	14	12218.84836471875	12218.769315915528	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	22.0	19.0	1.8328289620727648E-15	3.6656579241455296E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	101	483	650	89	8	5365.8708464374995	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	29.0	24.0	1.884753055662026E-15	3.769506111324052E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	99	481	647	89	9	5365.870345339845	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	29.0	21.0	2.022973474988879E-15	4.045946949977758E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	836	1254	1678	129	14	10406.177833875001	10406.177833875001	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPVME(LKD)[34.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	36.0	29.0	1.82959300479191E-16	4.308716486626077E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	478	885	1186	125	12	7825.961888171876	7825.961888171876	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKC)[-116.01]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	29.0	2.1646649991965094E-14	4.638164203342997E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	534	941	1260	53	11	7079.472630246093	7079.462630246094	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSL(ISEH)[-12.02]PTAEEAMDAKNRYEDPDKS.	1	19.0	15.0	8.046413365118381E-14	4.6900770069906775E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	341	741	994	119	14	9628.7606966875	9628.722135739748	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	32.0	26.0	2.2590761467220216E-16	4.969967522788448E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1046	1478	1976	61	12	10534.631813000004	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	20.0	17.0	2.649877849847661E-15	5.299755699695322E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	102	484	651	89	9	5365.8675987578135	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	27.0	21.0	2.7323053007353285E-15	5.464610601470657E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	645	1055	1412	149	16	8970.935253125	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	38.0	26.0	5.717454047550129E-15	5.717454047550129E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	629	1038	1390	191	14	11527.332767648437	11527.287767648437	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(RE)[545.27]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	45.0	34.0	3.1333688300250015E-15	5.792294657461698E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1669	2297	3068	179	16	10947.9375809375	10947.867208676758	6236	gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2]	11078.90770550293	2	101	M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR.	0	38.0	29.0	6.076932801928713E-15	6.076932801928713E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	17	389	524	75	9	4532.518406152344	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	20.0	18.0	3.046775401080848E-15	6.093550802161696E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	720	1135	1519	108	10	6509.645123343751	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	34.0	23.0	3.163875708576949E-15	6.327751417153898E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	289	689	924	45	5	4629.264247992189	4629.250951962891	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	47	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYAF.T	0	23.0	19.0	9.471048636552058E-17	6.4403130728554E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	438	845	1132	130	9	7825.921094101564	7825.921094101564	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSCGNVIKTHSTVGHDLNLDVCGK)[-116.06]CHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	31.0	3.240865364829873E-14	6.9441071614257096E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1426	1970	2632	181	13	16293.830172382815	16293.735172382814	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	1	171	.(M)[42.01](KKIACLSALAAVLAFSAGTAVAATSTV)[-2288.19]TGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	1	38.0	34.0	6.225981698838318E-16	7.319530970990366E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1204	1689	2258	92	11	9782.907552722658	9782.877552722655	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	21	104	A.PATTGIDQYELKSFIADFTHFKPGDTVP(QMYRTDEYNI)[71.10]KQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	1	41.0	27.0	3.321646662286064E-16	7.660027646019973E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	667	1082	1448	144	13	8970.92052106641	8970.880617337645	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	29.0	25.0	7.917647616955278E-15	7.917647616955278E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	461	868	1163	130	12	7825.948704578126	7825.948704578126	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSCGNV)[-116.03]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	44.0	28.0	4.220334900476097E-14	8.907820825048752E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	139	524	704	74	9	4461.540964642579	4461.535964642579	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	40	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFD.P	1	27.0	20.0	2.5764746049481425E-16	9.025926617884326E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	564	971	1300	51	5	3110.6507251250005	3110.6345579199224	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	92	121	A.PAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	25.0	21.0	3.811217572016877E-16	9.146922172840505E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	166	553	743	104	10	6250.611026250001	6250.611026250001	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	31.0	22.0	7.577511840879613E-14	9.19432526480356E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	208	605	812	104	11	6250.613760015624	6250.608760015625	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	29.0	21.0	7.63130267197611E-14	9.438624468316764E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	18	390	526	75	7	4532.526976707031	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	30.0	23.0	4.831417899216623E-15	9.662835798433246E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1795	2530	3379	111	7	8795.478682398438	8795.422834592286	816	gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2]	8926.463331418458	2	80	M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE.	0	33.0	28.0	9.98635405126088E-15	9.98635405126088E-15	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	32	404	544	75	5	4532.529626851564	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	20.0	18.0	5.064226863937576E-15	1.0128453727875152E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	451	858	1150	134	13	8094.042785378906	8094.042785378906	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCS(CGNV)[152.07]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	29.0	4.2287836226632405E-14	1.0664417124377208E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	933	1356	1814	150	12	9169.758986859375	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	39.0	29.0	1.0815102027583908E-14	1.0815102027583908E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	19	391	527	75	6	4532.528698507813	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	21.0	20.0	5.451239374754103E-15	1.0902478749508207E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	172	559	751	104	13	6250.622218269531	6250.592218269531	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIK(LV)[-117.03]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	24.0	20.0	8.433814261829585E-14	1.1085825560191088E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	27	399	538	75	10	4532.528952417969	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	22.0	17.0	5.686076287478431E-15	1.1372152574956861E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	963	1389	1858	92	8	6851.6864508125	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	32.0	25.0	6.284328217843355E-15	1.256865643568671E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	375	777	1042	150	10	9043.934221390627	9043.934221390627	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHA(GTNVGCGR)[-.96]DHTLFAKADGKVKFEVKGPKNRKYISIVAE.	1	38.0	32.0	1.0971156383605196E-13	1.2813029353115557E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	760	1176	1574	171	17	10277.697982027346	10277.687982027346	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.97]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	1	38.0	25.0	7.405598895258253E-14	1.2847753703012875E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1256	1745	2332	120	7	7256.043631398437	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	33.0	29.0	6.7104653610992205E-15	1.3420930722198441E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1328	1829	2444	158	16	9515.243743875	9515.17277355713	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	47.0	27.0	6.9522306687997486E-15	1.3904461337599497E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	529	936	1254	65	10	7079.475938960936	7079.475938960936	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS.	1	19.0	18.0	2.620967718398775E-13	1.5277970791564904E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	185	574	771	104	10	6250.605533085938	6250.605533085938	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	26.0	22.0	1.2595937420405211E-13	1.5550540025191618E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	29	401	540	75	7	4532.523985984375	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	29.0	21.0	7.797033223875473E-15	1.5594066447750946E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	207	604	811	104	10	6250.615298710938	6250.605298710938	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	25.0	21.0	1.2999906540599014E-13	1.578815413959092E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	636	1045	1399	177	13	11527.32875214453	11527.30875214453	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	40.0	33.0	8.727596017634432E-15	1.61336920508731E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	340	740	992	160	14	9628.7606966875	9628.722135739748	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	38.0	29.0	7.337023918373562E-16	1.6141452620421837E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	477	884	1184	130	13	7825.963340199219	7825.9533401992185	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	38.0	23.0	7.857625137209818E-14	1.6585014811210386E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1183	1663	2223	46	14	12217.8537358125	12217.8187358125	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDIL(TYTNKKAAVLV)[-.95]KKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	1	20.0	19.0	7.431994946656135E-14	1.6789080543914582E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1872	2672	3568	80	13	12291.595131671875	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	28.0	21.0	8.83668969225579E-15	1.767337938451158E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	700	1115	1492	52	9	7655.990093828125	7655.959249692384	702	gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2]	9913.159528928223	22	91	A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK.	0	19.0	15.0	6.709766199348306E-16	1.8787345358175257E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	52	425	572	72	5	4416.470382714845	4416.480382714845	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKL(CRNCKIVK)[-116.03]RDGVIRVICSAEPKHKQRQG.	1	21.0	18.0	3.910899071811674E-13	1.8913824645688884E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1537	2128	2843	95	7	10088.907721093748	10088.85857220215	2412	gi|16764601|ref|NP_460216.1| putative periplasmic protein [Salmonella typhimurium LT2]	12681.31208630127	25	114	A.ASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNCSLAN.	0	34.0	29.0	7.609504188069207E-16	1.902376047017302E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	855	1275	1706	153	14	9699.292178828126	9699.242078977051	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	36.0	24.0	1.9804446239696386E-14	1.9804446239696386E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	837	1255	1679	88	10	10405.1766644375	10405.1766644375	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV(PVMELKD)[33.04]TRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	28.0	25.0	8.69655614779716E-16	2.080508962938994E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	404	810	1086	129	9	7825.957348984377	7825.957348984377	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIK(THSTVGHDLNLDVCGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	42.0	31.0	1.0517376488514149E-13	2.2198926748371468E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	436	843	1130	130	9	7825.921094101564	7825.921094101564	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDL(NLDVC)[-116.06]GKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	39.0	29.0	1.0523362232882103E-13	2.254809960223988E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1566	2159	2884	149	15	9233.084490933592	9233.084490933592	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDD(V)[-.93]ALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	51.0	28.0	1.5378082599551277E-13	2.3087103123183515E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	262	662	888	47	5	2823.5035183281248	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	23.0	20.0	2.9362249285647586E-16	2.4957911892800447E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1936	2866	3827	78	9	9972.992058046875	9972.923879819336	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	91	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ.	0	28.0	23.0	1.2795091427131659E-14	2.5590182854263318E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1547	2139	2858	116	10	9234.069662437501	9234.010030942383	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	24.0	24.0	1.5273357471694004E-14	3.054671494338801E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	368	770	1032	150	10	9043.970232132815	9043.930232132812	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLA(GSIIVRQRGTK)[-.97]FHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	1	37.0	30.0	2.791246959082595E-13	3.2658099704074234E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1841	2628	3510	116	16	12160.54133325	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	28.0	22.0	3.668580829564143E-14	3.668580829564143E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	677	1092	1462	102	9	6378.606921710939	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	36.0	23.0	4.1298286357355256E-14	4.1298286357355256E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	100	482	648	89	8	5365.8757292499995	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	27.0	21.0	2.2733639656175523E-14	4.5467279312351045E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	16	388	523	75	8	4532.51744240625	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	22.0	18.0	2.3696008788093292E-14	4.7392017576186583E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	856	1276	1707	148	14	9699.292178828126	9699.242078977051	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	42.0	24.0	5.4419111387084926E-14	5.4419111387084926E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	251	649	871	47	5	2823.5093166679685	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	21.0	20.0	7.463710115625215E-16	5.89633099134392E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	323	723	970	113	10	8420.735488851566	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	24.0	19.0	6.132483886616762E-14	6.132483886616762E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	256	654	878	47	5	2823.506264910156	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	22.0	20.0	7.744515282010814E-16	6.195612225608651E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	377	779	1044	150	9	9044.941375320312	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	34.0	27.0	6.626261247746055E-14	6.626261247746055E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	167	554	744	104	12	6250.6160055	6250.611005500001	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	26.0	20.0	5.67980797856262E-13	6.901188052815655E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	671	1086	1454	140	12	8970.921144234379	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	32.0	25.0	6.935232179089111E-14	6.935232179089111E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	930	1353	1810	151	12	9169.750197796875	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	41.0	29.0	6.986680074213612E-14	6.986680074213612E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	94	474	638	184	12	11064.95933071875	11064.865835385743	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	0	34.0	28.0	2.1404421587467135E-15	7.063459123864154E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	20	392	528	75	7	4532.526976707031	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	27.0	20.0	3.533874295149882E-14	7.067748590299764E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	58	431	580	105	11	6327.400245039062	6327.400245039062	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.(AV)[16.01]QQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	36.0	24.0	3.628066525083404E-13	7.130685799981941E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	178	565	759	104	11	6250.608388921874	6250.608388921874	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	27.0	20.0	6.114231128906945E-13	7.412036821410524E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	175	562	755	104	13	6250.613886970703	6250.613886970703	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIK(LV)[-117.01]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	23.0	19.0	5.744055125841397E-13	7.692730138510996E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	260	659	884	47	4	2823.5032259687496	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	25.0	20.0	9.35506762985053E-16	7.951807485372951E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1184	1664	2224	62	12	12217.840455781252	12217.810455781251	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDI(L)[-.96]TYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	1	20.0	19.0	3.5040820688108195E-13	7.988039281190175E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1771	2472	3302	29	8	8095.21093028125	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	12.0	12.0	8.307731849212092E-14	8.307731849212092E-14	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	661	1075	1439	92	11	8970.927992988285	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	23.0	18.0	1.0002171681685521E-13	1.0002171681685521E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	180	567	762	104	12	6250.616737921875	6250.611737921876	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIKL)[14.03]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	24.0	19.0	8.200318232922461E-13	1.0151700701004423E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	699	1114	1491	106	12	6378.6030380468765	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	37.0	20.0	1.0551099304207779E-13	1.0551099304207779E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	640	1050	1406	148	13	8970.923694894534	8970.880617337645	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	29.0	25.0	1.0812674724913115E-13	1.0812674724913115E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	47	420	566	73	10	4416.467572050781	4416.467572050781	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	24.0	17.0	2.2470813533091507E-12	1.0867297237972071E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	300	700	939	140	16	8420.730285	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	33.0	21.0	1.0878288397965143E-13	1.0878288397965143E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	177	564	758	104	10	6250.607364140626	6250.607364140626	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	22.0	19.0	9.27816303309367E-13	1.1247544390529839E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1029	1461	1954	72	15	10534.644958144532	10534.58869	4296	gi|16765553|ref|NP_461168.1| 50S ribosomal subunit protein L25 [Salmonella typhimurium LT2]	10534.58869	1	94	.MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDHDQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA.	0	26.0	17.0	5.6532105688592304E-14	1.1306421137718461E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	378	781	1047	150	8	9044.9455995625	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	29.0	26.0	1.1340796299607344E-13	1.1340796299607344E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1282	1774	2371	114	12	7256.024707453127	7255.987646298827	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	37.0	24.0	5.99642946897502E-14	1.199285893795004E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1002	1432	1915	106	12	8113.338076281251	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	28.0	23.0	6.616530236769578E-14	1.3233060473539155E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	457	864	1158	130	13	7825.957786	7825.957786	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSC)[-116.02]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	40.0	25.0	6.30193050517531E-13	1.350296165545656E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	22	394	531	75	7	4532.526976707031	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	29.0	22.0	6.784193083250097E-14	1.3568386166500193E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	361	763	1023	143	12	9044.927970171877	9044.898699002684	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	32.0	24.0	1.4703873137613007E-13	1.4703873137613007E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1887	2726	3640	60	11	12217.51667709375	12217.51667709375	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQI)[42.01]IEAVS(A)[15.08]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	29.0	22.0	6.206556154852412E-13	1.5206641549178974E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1281	1773	2370	94	12	14041.5688978125	14041.5688978125	6612	gi|16766715|ref|NP_462330.1| 30S ribosomal subunit protein S8 [Salmonella typhimurium LT2]	14174.542101102295	2	130	M.SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVE(GD)[-1.93]TKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA.	1	22.0	22.0	6.469740904246878E-13	1.5216660350449072E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1414	1956	2614	86	11	9113.842035488282	9113.737188535159	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	23.0	19.0	8.335547763760805E-14	1.667109552752161E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	682	1097	1468	106	9	6378.615710773439	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	34.0	22.0	1.6916533376017936E-13	1.6916533376017936E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	664	1079	1444	78	12	11177.30506025	11177.30506025	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEA(A)[-.96]IQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	1	24.0	21.0	1.5592313489161054E-12	1.8301610876721553E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	632	1041	1394	160	13	11527.323991402343	11527.278991402343	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MKARE)[414.23]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	38.0	33.0	1.0036545428938591E-15	1.8373896904326574E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	485	892	1195	66	10	7825.924438218752	7825.924438218752	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNL(DVCGKC)[-116.05]HPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	26.0	21.0	9.543912134536603E-13	2.0144244774240555E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1060	1501	2007	183	9	11759.480549843745	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	40.0	29.0	1.0139616194118811E-13	2.0279232388237622E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	308	708	950	140	14	8420.733850671875	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	27.0	21.0	2.0713601428963896E-13	2.0713601428963896E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1310	1811	2420	83	13	9531.219299226563	9531.219299226563	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDA(V)[16.05]QLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	22.0	20.0	7.079035372268685E-13	2.1276507055798275E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	687	1102	1475	106	10	6378.621252156249	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	35.0	22.0	2.1563697402561888E-13	2.1563697402561888E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	143	530	712	27	5	3075.304970964845	3075.292478757328	1850	gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2]	148381.19957180542	212	236	W.VDDEEYDDEYDEETDGVQRESRRAR.I	0	12.0	12.0	9.46488319159786E-17	2.2381451514527214E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	903	1324	1771	61	13	8323.098704617187	8323.048940854495	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	0	19.0	16.0	1.2159299705810825E-13	2.431859941162165E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1497	2074	2771	51	8	8375.33148375	8375.250936704102	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	22.0	20.0	4.942771018313668E-15	2.471385509156834E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	460	867	1162	130	12	7825.948704578126	7825.948704578126	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSCGNVIK)[-116.03]THSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	39.0	26.0	1.3767249565537312E-12	2.905840301197472E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	293	693	930	140	14	8420.734705164063	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	26.0	21.0	2.982924730625136E-13	2.982924730625136E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1264	1753	2343	68	8	7256.02866496875	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	21.0	20.0	1.6605048576641383E-13	3.3210097153282766E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	310	710	952	140	11	8420.73071529297	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	26.0	23.0	3.378156320528462E-13	3.378156320528462E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	556	963	1290	58	5	4152.926543542971	4152.910238461911	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	59	A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGAG.A	0	23.0	20.0	1.1720136868954677E-16	3.5381262366257096E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	706	1121	1500	47	9	6509.640863699219	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	23.0	17.0	1.8598537497006777E-13	3.7197074994013554E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	258	656	880	47	5	2823.506264910156	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	22.0	20.0	4.781971544216575E-15	3.82557723537326E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	701	1116	1494	106	10	6378.607214070312	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	34.0	21.0	3.871588650383236E-13	3.871588650383236E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	447	854	1144	134	14	8094.0000479531245	8094.0000479531245	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGN)[152.02]VIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	25.0	21.0	1.575470324897691E-12	3.9155403976050174E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	242	640	859	50	8	4375.341046874999	4375.323522763672	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	54	92	N.GRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	21.0	18.0	1.0725918557906414E-14	4.1831082375835013E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	647	1057	1415	149	15	8970.926049632815	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	29.0	24.0	4.2061980188366536E-13	4.2061980188366536E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	41	414	558	73	7	4416.466023585937	4416.466023585937	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	25.0	20.0	8.78918063690642E-12	4.2506088317110416E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	557	964	1291	51	5	4152.926543542971	4152.910238461911	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	59	A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGAG.A	0	20.0	17.0	1.4119403008712557E-16	4.262427204493346E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	756	1172	1568	133	19	10277.71022446094	10277.71022446094	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPN(M)[-.95]IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	1	29.0	22.0	2.4456209178359345E-12	4.2946457294177737E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	107	491	660	87	10	5365.866914554688	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	24.0	17.0	2.2032015425884296E-13	4.406403085176859E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	861	1281	1714	149	11	8948.887047398437	8948.887047398437	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNYITES(GKIVPSRITGTRAKY)[-85.02]QRQLRRAIKRARYLSLLPYTDRHQ.	1	33.0	27.0	2.833050252963397E-12	4.5069573107938127E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	644	1054	1411	145	13	8970.923694894534	8970.880617337645	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	28.0	24.0	4.528934521199003E-13	4.528934521199003E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1272	1763	2356	84	10	10098.435697781253	10098.435697781253	7232	gi|16767026|ref|NP_462641.1| RNA polymerase omega subunit [Salmonella typhimurium LT2]	10230.389227109375	2	91	M.ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD(PL)[-.91]VPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR.	1	25.0	22.0	2.6591863412509894E-12	4.571116736453213E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1775	2476	3307	24	9	8095.218546859375	8095.15341015381	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	16.0	12.0	4.741021784263844E-13	4.741021784263844E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	303	703	943	140	11	8420.723330039064	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	23.0	21.0	4.972547893093672E-13	4.972547893093672E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1902	2756	3680	112	15	12202.578934722656	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	24.0	20.0	5.334307948243657E-13	5.334307948243657E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1482	2051	2740	17	8	9387.850798	9387.79499645752	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	10.0	10.0	2.7776516674122604E-13	5.555303334824521E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	928	1351	1807	104	11	9169.745694011719	9169.690111356203	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	27.0	23.0	5.58582414841451E-13	5.58582414841451E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	82	458	616	184	11	11079.909233671875	11079.909233671875	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTN(GN)[15.04]TNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	40.0	32.0	2.1800716183972558E-14	5.7376433698923E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	839	1257	1682	53	13	8906.863942476562	8906.863942476562	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.03]PYTDRHQ.	1	21.0	17.0	2.2059695751384056E-12	6.182243411855055E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	878	1299	1738	109	12	10060.484379203124	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	27.0	21.0	6.462847993727588E-13	6.462847993727588E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1650	2277	3042	182	15	11211.768012496093	11211.739576535645	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	4	103	M.SYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	0	38.0	30.0	1.899812702647458E-14	6.649344459266103E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	437	844	1131	130	10	7825.925658921877	7825.925658921877	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CSCGNVIKTHSTVGHDLNLDVCGK)[-116.05]CHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	35.0	27.0	3.216930107416623E-12	6.892821787396406E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	517	924	1238	101	9	6394.599163246094	6394.594163246094	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGMVN)[16.02]AVSFMVKVEE.	1	33.0	24.0	3.284374980601658E-12	8.286267152894092E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1565	2158	2883	84	9	9233.078891562498	9233.043891562498	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALV(GFGTFAVKER)[-.97]AARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	29.0	26.0	5.724720795965516E-12	8.592038139028482E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	305	705	946	140	16	8420.73419125	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	31.0	19.0	8.80492370815393E-13	8.80492370815393E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1478	2047	2735	47	9	9387.833390164062	9387.794996457518	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	21.0	15.0	4.443713438861514E-13	8.887426877723028E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	794	1211	1620	91	14	9518.352778296876	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	23.0	18.0	8.980761225276153E-13	8.980761225276153E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	223	621	834	94	10	6367.640417195312	6367.61970348877	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	0	21.0	17.0	4.494433431726878E-13	8.988866863453756E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	261	661	887	47	4	2823.5039583906246	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	23.0	20.0	1.128610531788202E-14	9.028884254305615E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	831	1249	1671	52	14	10406.176979382813	10406.196979382814	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPI(SNNNG)[34.06]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	24.0	21.0	4.0302279023618163E-14	9.491241692707402E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	371	773	1036	150	9	9043.935027664062	9043.935027664062	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSE(AKRLGV)[-300.15]KRFGGEAVLAGSIIVRQRGTKFHAG(TNV)[299.19]GCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	2	42.0	36.0	5.557329390030155E-14	9.668490078607534E-13	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	91	470	632	184	13	11064.954740265624	11064.865835385743	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	0	34.0	24.0	3.297314040418815E-14	1.0551404929340208E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	573	980	1312	70	5	4958.551395808594	4958.534132199705	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	306	350	G.ESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA.	0	17.0	16.0	2.359277418880156E-14	1.1324531610624749E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	882	1303	1743	95	12	10059.49487725	10059.454877249998	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIV(SE)[-.97]FGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	33.0	23.0	1.281101038708404E-11	1.2570688402910748E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	225	623	836	68	12	6367.6372177343765	6367.61970348877	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	0	14.0	13.0	6.306866603661445E-13	1.261373320732289E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	250	648	870	47	5	2823.5093166679685	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	21.0	19.0	1.6136248949495902E-14	1.2747636670101762E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	366	768	1030	145	12	9044.971183062502	9044.898699002684	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	29.0	23.0	1.3106988845745762E-12	1.3106988845745762E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	129	514	691	44	5	2941.396578734376	2941.387304501957	6348	gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2]	97513.55948086304	105	129	A.AEEQAQREAEEQARREAEEQAKREA.Q	0	20.0	17.0	6.307516366100151E-16	1.390801142598133E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	224	622	835	67	12	6367.6372177343765	6367.61970348877	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	0	14.0	12.0	8.06608088138979E-13	1.613216176277958E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	658	1071	1434	81	17	11177.324954664064	11177.324954664064	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAA(IQ)[-.94]VSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	1	29.0	18.0	1.379725496115595E-11	1.6210215904752015E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	209	606	814	104	12	6250.61161096875	6250.606610968751	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AK)[14.03]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	20.0	18.0	1.4794266287996426E-11	1.7950918343951707E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	89	468	630	177	7	11063.949201929687	11063.949201929687	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHP(D)[-.92]GSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	37.0	30.0	7.749670915169701E-14	1.997834718393936E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1729	2386	3187	60	14	11782.20977384375	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	22.0	18.0	2.025942383619755E-12	2.025942383619755E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1120	1587	2122	153	17	9229.073784148439	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	27.0	20.0	1.0663823186131423E-12	2.1327646372262845E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	736	1152	1542	56	12	9518.344869359378	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	18.0	15.0	2.1862365379556806E-12	2.1862365379556806E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	642	1052	1408	146	15	8970.935204906253	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	31.0	24.0	2.2724435360046194E-12	2.2724435360046194E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1245	1734	2318	19	9	6478.509447007813	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	13.0	11.0	1.1987161636431097E-12	2.3974323272862193E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	307	707	948	140	17	8420.728319058595	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	29.0	20.0	2.5099596892573712E-12	2.5099596892573712E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1369	1901	2540	76	18	17503.406591898438	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	19.0	16.0	2.560152076967169E-12	2.560152076967169E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	403	809	1084	130	9	7825.967236679689	7825.967236679689	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.01]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	38.0	27.0	1.2819708574116587E-11	2.705843723318956E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	627	1036	1387	187	14	11527.336185617187	11527.286185617188	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(RE)[545.27]VKRVALADKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	42.0	30.0	1.4720850860054008E-12	2.721272547710284E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1774	2475	3306	33	8	8095.21874278125	8095.153410153809	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	11.0	11.0	2.740123707743777E-12	2.740123707743777E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	44	417	562	73	9	4416.468469876953	4416.468469876953	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	27.0	18.0	5.723386122924059E-11	2.8407747986449204E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	675	1090	1459	69	9	6378.59648469922	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	22.0	18.0	3.209689329983692E-12	3.209689329983692E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	637	1046	1400	182	15	11527.327322703124	11527.307322703124	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(REVKRVALA)[545.29]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	35.0	29.0	1.753625786377365E-12	3.2417241073849683E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	879	1300	1739	163	13	10059.493826835936	10059.473826835936	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDT(GST)[-.95]DVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	34.0	26.0	3.7578528324892587E-11	3.643978504232009E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	707	1122	1502	63	10	6509.6506165078135	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	24.0	17.0	1.878913063518778E-12	3.757826127037556E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	106	488	656	89	7	5365.868112671876	5365.83616467041	3026	gi|16764909|ref|NP_460524.1| 30S ribosomal subunit protein S22 [Salmonella typhimurium LT2]	5365.83616467041	1	47	.MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRADSQK.	0	16.0	16.0	1.977195498073216E-12	3.954390996146432E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	860	1280	1712	85	16	9699.311562375	9699.242078977051	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	21.0	17.0	4.063237791077524E-12	4.063237791077524E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1519	2108	2816	70	13	10850.76821579297	10850.697179990235	6412	gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2]	10850.697179990235	1	95	.MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH.	0	25.0	16.0	1.4369674227355915E-12	4.310902268206774E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	299	699	938	140	15	8420.734509242187	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	28.0	19.0	4.468448217182689E-12	4.468448217182689E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1296	1791	2394	77	11	7256.023804742187	7255.987646298828	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	0	31.0	21.0	2.459423071336436E-12	4.918846142672872E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	468	875	1172	49	11	8246.031237367188	8246.031237367188	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATC(SCGNVIKTHSTVGHDL)[304.05]NLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	19.0	16.0	8.632137534328263E-12	5.087338593850948E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	376	778	1043	150	8	9044.930951125	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	28.0	24.0	5.398296342547635E-12	5.398296342547635E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	252	650	872	47	4	2823.5093294843746	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	23.0	19.0	6.960622233642011E-14	5.498891564577189E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1778	2479	3311	19	9	8095.215800277344	8095.15341015381	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	10.0	9.0	5.667016959635713E-12	5.667016959635713E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1413	1955	2612	63	9	9113.77180965625	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	17.0	16.0	2.8997345616551622E-12	5.7994691233103245E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	15	387	522	75	8	4532.51744240625	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	16.0	14.0	2.910072599472102E-12	5.820145198944204E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	69	442	595	105	7	6310.404376660156	6310.404376660156	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTA(V)[-.99]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	23.0	18.0	8.934062153256965E-11	6.016607474660772E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	791	1208	1616	116	14	9518.33397946875	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	30.0	22.0	6.349828665850093E-12	6.349828665850093E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	181	568	763	104	14	6249.613599496092	6249.613599496092	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIK)[13.03]LVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	23.0	15.0	6.6371989082471E-11	6.4403431368930116E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	42	415	559	73	6	4416.467318140625	4416.467318140625	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCKIVK)[-116.05]RDGVIRVICSAEPKHKQRQG.	1	24.0	21.0	1.4222294819399735E-10	6.8781624208166056E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	243	641	860	57	8	4375.341046874999	4375.323522763672	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	54	92	N.GRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	18.0	16.0	1.8138541162405801E-13	7.074031053338263E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	554	961	1287	93	9	6394.593670082031	6394.578670082032	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE.	1	32.0	23.0	2.967230292096525E-11	7.46558399200864E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	365	767	1028	138	13	9043.936807453125	9043.921807453125	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTL(F)[-.98]AKADGKVKFEVKGPKNRKYISIVAE.	1	32.0	25.0	6.926004559887461E-11	8.089541393548317E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	576	983	1316	41	4	3148.4558496874997	3148.442693906247	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	49	A.APKDNTWYAGAKLGWSQYHDTGFIHNDG.P	0	18.0	17.0	3.8072636118585086E-15	8.982129386245448E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	59	432	582	103	12	6311.411392656252	6311.390989499512	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	25.0	18.0	9.107977757731965E-12	9.107977757731965E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	679	1094	1464	62	10	6378.609655476562	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	22.0	16.0	9.416557141371364E-12	9.416557141371364E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1534	2125	2839	97	14	9250.101228382813	9250.036228382813	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	2	90	M.NKSQLIEKIAAGADISKAAAGRALD(A)[147.07]IIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	38.0	22.0	2.5009420524017352E-11	9.421379406384816E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	956	1381	1847	111	10	9300.779858515629	9300.779858515629	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	1	83	.(M)[-.99]ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFID(AQ)[1.04]HIGGCDDLYALDARGGLDPLLR.	2	36.0	33.0	4.626840834561439E-13	9.521291945703298E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	543	950	1272	101	9	6394.603557777344	6394.578557777344	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE.	1	36.0	25.0	3.792111311505051E-11	9.5848401715431E-12	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1465	2021	2700	60	12	15163.5447344375	15163.423299985352	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE.	0	18.0	16.0	5.610178243914604E-12	1.1220356487829209E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1834	2611	3487	24	8	8103.0571216875	8102.998132901612	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILKMEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ.	0	12.0	12.0	1.1927651713787709E-11	1.1927651713787709E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	925	1348	1803	59	11	9169.768521160157	9169.690111356203	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	21.0	19.0	1.2103714406116648E-11	1.2103714406116648E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1399	1938	2590	96	17	15459.00297837891	15458.961076932372	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	0	32.0	24.0	1.2116367547191577E-11	1.2116367547191577E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1096	1550	2072	128	11	9229.086861535157	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	22.0	20.0	6.170260490250097E-12	1.2340520980500194E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	249	647	868	68	12	9512.694234593753	9512.694234593753	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLT(PQQQKMRE)[-116.03]CNVQATEQSLKGDDRSKFMSACLKKAA.	1	30.0	25.0	2.3018632809760495E-13	1.2480968020152714E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	40	413	556	73	9	4416.469568509766	4416.469568509766	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRN)[-116.04]CKIVKRDGVIRVICSAEPKHKQRQG.	1	18.0	16.0	2.6304462498360717E-10	1.2721320135286053E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	939	1362	1822	47	8	7264.66733684375	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	24.0	21.0	3.8637542018242524E-13	1.2750388866020032E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	68	441	594	105	13	6311.415286089844	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	26.0	17.0	1.6047653928007552E-11	1.6047653928007552E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	439	846	1134	126	12	8094.009473	8094.009473	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGN(VIKTH)[152.03]STVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	30.0	22.0	6.559890679432386E-11	1.6543152059343907E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	688	1103	1476	101	6	6378.615932328125	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	24.0	16.0	1.6609917252793302E-11	1.6609917252793302E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1304	1803	2410	59	15	10614.607104347659	10614.512960629881	1892	gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2]	10614.512960629883	1	94	.MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG.	0	16.0	15.0	8.727663969699796E-12	1.7455327939399593E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	211	608	816	104	10	6250.613467656251	6250.60346765625	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.02]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	19.0	17.0	1.471520432768796E-10	1.820020691010421E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1206	1691	2260	75	10	9781.90439171094	9781.874391710939	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	2	104	M.(KSKLLPCALLLATSFAWAAPATTGID)[42.01](QYELKSFIADFTHFKPGDTV)[-2014.05]PQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	1	23.0	20.0	3.265248616454945E-12	1.8395526731000576E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	663	1078	1443	149	16	8970.9088859375	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	26.0	21.0	1.8798744264456373E-11	1.8798744264456373E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	56	429	578	105	12	6327.403833296876	6327.403833296876	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AV(QQNKPTRSKRGMRRSHD)[16.01]ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	33.0	22.0	9.7773988474173E-11	1.9251760720529964E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	536	943	1263	41	8	7079.476941156249	7079.476941156249	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS.	1	16.0	15.0	3.4251225593392543E-10	2.0299487599678846E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	45	418	563	73	6	4416.468416773438	4416.488416773438	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKL(CRNCKIVKR)[-116.03]DGVIRVICSAEPKHKQRQG.	1	23.0	20.0	4.1642283486960574E-10	2.0668944388352382E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1724	2381	3180	29	13	11782.23072171875	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	15.0	15.0	2.1512270513648736E-11	2.1512270513648736E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	690	1105	1479	106	11	6378.608238851562	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	36.0	18.0	2.1823052587877296E-11	2.1823052587877296E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1794	2529	3378	25	8	8794.481782375	8794.481782375	816	gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2]	8926.463331418458	2	80	M.PKKNEAPASFETALSELEHIVTRLESGDL(PLEDALNEFERGVQLARQGQAKLQQAEQRVQI)[-.94]LLSDNEEASPEPFIADNE.	1	16.0	15.0	1.2618738948649252E-10	2.2752318038962736E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	650	1060	1419	48	16	11178.336503124998	11178.26911755127	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	0	15.0	11.0	2.3594746564462873E-11	2.3594746564462873E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	232	630	846	69	10	6250.606753789063	6250.606753789063	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[14.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	17.0	15.0	2.146874163048641E-10	2.6504619296896803E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	520	927	1242	98	10	6394.599028359375	6394.5940283593745	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGM)[16.02]VNAVSFMVKVEE.	1	35.0	22.0	1.0693148401594202E-10	2.697812670126978E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1416	1958	2616	67	11	9113.842035488282	9113.737188535159	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	18.0	16.0	1.4853240544845583E-11	2.9706481089691166E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	80	456	614	184	12	11079.905863921875	11079.905863921875	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTN(GNTN)[-212.10]STMQHPDGSTMNHDGMTKDEEHKNTMCKDGR(CPDINK)[227.14]KVETGNGVNNDVNTKTDGTTQ.	2	44.0	37.0	6.718739144547057E-15	3.014980903850089E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	210	607	815	104	13	6250.616664070312	6250.611664070312	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIK(LV)[-117.01]SSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	20.0	17.0	2.2698684771678626E-10	3.0399230617076454E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	388	794	1064	108	10	7882.975804820312	7882.995804820313	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITAT(CS)[-58.98]CGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	33.0	22.0	2.582130943710954E-10	3.048606498611876E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	685	1100	1472	106	11	6378.605553304687	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	33.0	18.0	3.070223818154282E-11	3.070223818154282E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1132	1605	2146	68	14	9229.058502773438	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	16.0	13.0	1.5846273871658863E-11	3.1692547743317726E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	402	808	1083	130	10	7825.968383531252	7825.968383531252	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.01]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	38.0	26.0	1.507480282667607E-10	3.1818243272073106E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	684	1099	1471	106	8	6378.5991830625	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	27.0	19.0	3.186817277335498E-11	3.186817277335498E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1551	2143	2863	47	12	12939.6078863125	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	17.0	13.0	3.1891223252692013E-11	3.1891223252692013E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	847	1266	1694	40	9	7733.042145816407	7732.998460965573	8942	gi|17233500|ref|NP_490541.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	35413.27932568115	246	313	M.TIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH.	0	15.0	15.0	8.840743600068988E-13	3.2710751320255256E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1191	1671	2234	89	10	7272.038771171876	7272.028771171876	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQFN(LRMQA)[16.04]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	27.0	23.0	8.20315309851195E-11	3.308706733042924E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	141	528	710	46	5	3075.304970964845	3075.292478757328	1850	gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2]	148381.19957180542	212	236	W.VDDEEYDDEYDEETDGVQRESRRAR.I	0	15.0	14.0	1.4230496857804652E-14	3.365061871374429E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1502	2079	2778	35	8	8375.3305071875	8375.250936704102	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	17.0	15.0	7.058415190981165E-13	3.529207595490583E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	257	655	879	47	5	2823.506264910156	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	18.0	17.0	4.510155675694135E-13	3.608124540555308E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	36	409	551	67	7	4507.49463507422	4507.49463507422	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKL(C)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG.	1	18.0	15.0	1.4678900382206641E-9	3.6369305508410846E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	87	464	624	64	14	11080.919754304687	11080.919754304687	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTA(V)[4769.53]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	18.0	17.0	2.709022056238562E-12	4.026138608121421E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	233	631	847	80	10	6250.606753789063	6250.606753789063	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AK)[14.03]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	16.0	15.0	3.341319021846116E-10	4.125085212155698E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	524	931	1247	104	9	6394.601360511719	6394.596360511719	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGM(VN)[16.02]AVSFMVKVEE.	1	34.0	23.0	1.8300667671000013E-10	4.537355620909094E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1598	2212	2955	62	9	9191.654969367186	9191.654969367186	7882	gi|16767354|ref|NP_462969.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9306.687360959473	2	79	M.SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSAQHQREELERENNSLKEQQSGWQER(LQALLGRMEEV)[16.01].	1	23.0	20.0	1.6099977089106403E-10	4.566538956182907E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	718	1133	1516	98	8	6509.64014409375	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	23.0	18.0	2.3127161657319844E-11	4.625432331463969E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	9	381	514	75	8	4548.512079312499	4548.512079312499	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.(MKVRASV)[16.00]KKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	1	21.0	17.0	3.5338395147324485E-10	4.988949903151692E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1886	2725	3639	47	11	12217.51667709375	12217.51667709375	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQII)[42.01]EAVS(A)[15.08]MSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	27.0	19.0	2.0807312102478127E-10	5.097985563167799E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	709	1124	1504	58	9	6509.650751394532	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	21.0	15.0	2.6017912042222505E-11	5.203582408444501E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	285	685	919	51	4	3455.5762935625	3455.5653593115203	3040	gi|16764916|ref|NP_460531.1| putative outer membrane porin precursor [Salmonella typhimurium LT2]	39655.11356945556	22	52	A.AEVYNKDGNKLDLYGKVHAQHYFSDDNGSDG.D	0	18.0	14.0	2.0841262351562753E-14	5.217031937003945E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1123	1591	2127	147	17	9229.091423308595	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	23.0	17.0	2.616375728507756E-11	5.232751457015512E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	676	1091	1460	105	8	6378.59771821875	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	24.0	18.0	5.6652737694104186E-11	5.6652737694104186E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	64	437	588	105	13	6311.420443560547	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	22.0	15.0	5.6967717297801925E-11	5.6967717297801925E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	545	952	1275	103	10	6394.600859414062	6394.575859414063	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE.	1	33.0	22.0	2.3175136339113638E-10	5.852307156341828E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1945	2889	3858	14	4	6121.11904371875	6121.108686643067	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	60	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILK.A	0	14.0	14.0	5.450076522161519E-13	5.940583409156056E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	870	1290	1726	103	10	8947.88260464844	8947.88260464844	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFR)[42.01]RRKFCRFTAEGVQEIDYKDIATLKNY(ITESGKIVPSRI)[-86.02]TGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ.	1	28.0	23.0	4.0165075741093733E-10	6.474855572412316E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	695	1110	1486	106	8	6378.6011361875	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	27.0	19.0	6.720062908134645E-11	6.720062908134645E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1499	2076	2774	45	13	10600.360375843751	10600.277429776612	5878	gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10600.277429776612	1	88	.MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI.	0	20.0	12.0	3.5174777558907294E-11	7.034955511781459E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1241	1730	2312	31	10	6478.511692492187	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	13.0	12.0	3.5430856967480536E-11	7.086171393496107E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1653	2280	3046	83	13	11210.843416546875	11210.843416546875	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	2	103	M.RMSYQFGESRVD(DDLTL)[-288.04]LSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	1	25.0	19.0	6.59946370592526E-11	7.26750757799745E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	401	807	1082	130	11	7825.97154454297	7825.97154454297	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCG(KCH)[-116.00]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	29.0	23.0	3.7148870392326944E-10	7.840976820831833E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	298	698	936	140	12	8420.731801109378	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	26.0	18.0	7.844987008593683E-11	7.844987008593683E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	149	536	720	23	4	2848.16533434375	2848.1542646460002	1850	gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2]	148381.19957180542	212	234	W.VDDEEYDDEYDEETDGVQRESRR.A	0	14.0	11.0	3.8435069610187365E-14	8.172588423546286E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	34	406	547	64	8	4507.49205878125	4507.49205878125	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLC)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG.	1	17.0	15.0	3.1105834253331227E-9	8.220413592274558E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	867	1287	1722	146	12	8948.895762609376	8948.895762609376	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAEGV)[42.01]QEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAIKRARYLSLL)[-85.01]PYTDRHQ.	1	33.0	22.0	5.135184033172709E-10	8.278230362835523E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1644	2270	3032	78	11	9261.102626605472	9261.072626605472	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MN)[28.00]KSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDV(AL)[-.94]VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	2	25.0	25.0	7.618374367216193E-12	8.345971919141336E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1976	3121	4167	78	10	11759.496223062502	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	21.0	19.0	2.097985664216843E-11	8.391942656867372E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1647	2274	3038	96	14	11210.834065351562	11210.834065351562	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	4	103	M.SYQFGESR(VDDDLT)[-.91]LLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	1	25.0	21.0	3.485993308531917E-12	8.672764429545183E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	336	736	987	135	13	9628.742765167968	9628.722135739747	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	0	27.0	23.0	4.083767017065476E-12	8.984287437544048E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1532	2123	2836	41	12	9250.093197375003	9250.033197375004	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.M(NKSQLIEKIAAGADISKAAAGRALDAI)[16.02]IASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	16.0	16.0	2.511015950005468E-10	9.247367521266594E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1862	2660	3552	31	16	12291.577454062499	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	18.0	11.0	4.893903219071029E-11	9.787806438142058E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	23	395	532	75	6	4532.527233664063	4532.5140401892095	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	19.0	15.0	4.897467348956239E-11	9.794934697912478E-11	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	61	434	584	105	12	6311.411392656252	6311.390989499512	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	25.0	16.0	1.2059379012697315E-10	1.2059379012697315E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	821	1239	1658	71	13	10657.597972707032	10657.597972707032	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	124	A.HAHLTHQYPAANAAVTASPQA(LT)[-.95]LNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK.	1	26.0	20.0	5.1925812249665856E-12	1.2340051778214046E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1498	2075	2772	55	14	10599.395580312499	10599.315580312501	5878	gi|16766348|ref|NP_461963.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10600.277429776612	1	88	.MDIHNKARIHWACRRGMRELD(IS)[-.96]IMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI.	1	22.0	15.0	6.508426109940766E-10	1.243048490178713E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1670	2298	3070	75	13	10947.950009523438	10947.867208676758	6236	gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2]	11078.90770550293	2	101	M.SKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR.	0	19.0	17.0	1.251344652948858E-10	1.251344652948858E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	37	410	552	73	6	4507.493793398438	4507.493793398438	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKL(C)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG.	1	17.0	16.0	5.246345745347172E-9	1.2998654275668527E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1094	1548	2070	148	11	9229.086861535157	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	20.0	19.0	6.952282147446084E-11	1.3904564294892167E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	11	383	516	75	9	4548.513409269531	4548.513409269531	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.(M)[16.00]KVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	1	16.0	14.0	9.664557853575574E-10	1.399392992372934E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	670	1085	1452	88	10	8969.911404242192	8969.911404242192	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKR(PVTGN)[-.97]NRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	1	17.0	17.0	9.323732271615689E-10	1.4287735674986694E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	296	696	934	140	14	8420.73555965625	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	23.0	17.0	1.444742588171989E-10	1.444742588171989E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	883	1304	1744	96	11	10059.494645925783	10059.494645925783	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.(SL)[-.93]STEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	24.0	20.0	1.4908274667510513E-9	1.462861006335808E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	622	1031	1380	189	15	11527.35570405078	11527.32570405078	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MKAREVKR)[42.01](VALAD)[372.26]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	35.0	27.0	1.0746501575335424E-10	1.5273540761995292E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	697	1112	1488	64	8	7655.99028975	7655.959249692383	702	gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2]	9913.159528928223	22	91	A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK.	0	20.0	17.0	5.491471116744172E-12	1.5376119126883682E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	864	1284	1718	147	16	8948.897176187498	8948.892176187499	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTA)[42.01]EGVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQ)[-85.01]RQLRRAIKRARYLSLLPYTDRHQ.	1	35.0	25.0	1.0140991756734702E-9	1.634789821115697E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	301	701	940	140	12	8420.730336265628	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	26.0	19.0	1.7659337474164386E-10	1.7659337474164386E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	115	500	672	80	11	6310.428251175781	6310.423251175781	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALT(A)[-.97]VTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	20.0	15.0	2.6316932061111556E-9	1.774516022178495E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	863	1283	1716	133	15	8948.905794960936	8948.885794960936	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAEG)[42.01]VQEIDYKDIATLKNYITESGK(IVPSRITGTRAKYQRQLRRAIKRARYLSL)[-85.02]LPYTDRHQ.	1	27.0	22.0	1.1543940191635613E-9	1.8364674466200109E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	702	1117	1495	100	6	6378.599819046875	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	23.0	15.0	1.936741436947521E-10	1.936741436947521E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1107	1566	2094	150	11	9229.068734093751	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	18.0	17.0	1.0234992700869768E-10	2.0469985401739536E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	691	1106	1480	105	12	6378.6096298437515	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	35.0	16.0	2.0850779609998999E-10	2.0850779609998999E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	306	706	947	140	13	8420.723243371094	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	21.0	17.0	2.2129180333442864E-10	2.2129180333442864E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	152	539	724	90	11	6311.406461625	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	20.0	16.0	2.2546499368437545E-10	2.2546499368437545E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	535	942	1262	53	10	7079.478990718749	7079.478990718749	748	gi|16763769|ref|NP_459384.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	7222.519148068847	2	63	M.PTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPK(PDSLISEH)[-12.00]PTAEEAMDAKNRYEDPDKS.	1	14.0	12.0	3.882245221593986E-9	2.2632874310622616E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1576	2175	2906	11	16	13295.160101999998	13294.998323636475	4820	gi|16765815|ref|NP_461430.1| putative arsenate reductase [Salmonella typhimurium LT2]	13426.038820462647	2	119	M.TDTIKIYHNPRCSKSRDTLNLLKSNGVEPEVVLYLDTPADAATVRELLRMLGMSSARELMRQKEDLYKTLHLADSELSEEALIQALVEHPKLMERPIVVANGQARIGRPPEQVLDILG.	0	8.0	8.0	2.2682459388182952E-10	2.2682459388182952E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1244	1733	2316	47	8	6478.508300156249	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	14.0	14.0	1.1780782842711514E-10	2.356156568542303E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	716	1131	1514	47	9	6509.640314382813	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	20.0	14.0	1.185192592276339E-10	2.370385184552678E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1661	2288	3056	144	11	12106.086636382814	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	26.0	23.0	1.1946502077074781E-10	2.3893004154149563E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	737	1153	1543	131	11	9517.343356296878	9517.343356296878	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAA(A)[-.95]LKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	1	22.0	19.0	1.889928560391066E-9	2.470732329262568E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	765	1181	1580	53	15	10278.698373871093	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	15.0	11.0	2.5170880557471574E-10	2.5170880557471574E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	593	1001	1340	166	11	9966.88357294141	9966.83842297119	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	27.0	24.0	1.560326032589886E-11	2.8085868586617953E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1340	1855	2479	83	8	12043.1884504375	12043.1884504375	7904	gi|16767365|ref|NP_462980.1| transcriptional repressor [Salmonella typhimurium LT2]	12173.194353299561	2	105	M.AEWSGEYISPYAEHGKKSEQVK(K)[1.03]ITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMRELGIDPETWEY.	1	21.0	20.0	1.5268030027043707E-9	2.814300328119597E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1235	1723	2303	165	14	11206.305256757812	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	30.0	21.0	1.4163625439568485E-10	2.832725087913697E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1564	2157	2882	93	9	9233.078891562498	9233.058891562498	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.MNKSQLIEKIAAGADISKAAAGRALDAI(IASV)[-.95]TESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	25.0	22.0	1.946647495841771E-9	2.921656815002081E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1773	2474	3304	62	7	8095.207952375	8095.207952375	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLL(SELLSVLEKHKAPTDLSLMV)[-.91]LGNMVTNLINT(S)[.97]VAPAQRQAIANSFARALQSSISEDNAH.	2	19.0	19.0	2.774504336784564E-11	3.2551781318613174E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1840	2626	3507	75	14	12160.552345210937	12160.430410581057	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	24.0	15.0	3.333202648561618E-10	3.333202648561618E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	678	1093	1463	103	8	6378.60650728125	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	24.0	18.0	3.5074843273355595E-10	3.5074843273355595E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	31	403	543	75	11	4532.534798976561	4532.514040189209	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG.	0	19.0	11.0	1.8334816540646165E-10	3.666963308129233E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1973	3117	4162	98	9	11759.484944374995	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	24.0	20.0	9.22775963075814E-11	3.691103852303256E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	294	694	931	140	13	8420.730384484375	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	21.0	18.0	4.187873896379777E-10	4.187873896379777E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1216	1704	2278	91	15	10304.611438808595	10304.534986691895	7548	gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2]	10435.575483518067	2	93	M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK.	0	27.0	16.0	4.24456838227203E-10	4.24456838227203E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1571	2166	2894	88	7	9646.790988804689	9646.760462003174	468	gi|16763627|ref|NP_459242.1| Rho-dependent transcription termination modulator [Salmonella typhimurium LT2]	9777.800958829346	2	86	M.SMNETYQPINCDDYDSLELACMHHLILTLTLKDGEVLQAKANDLILRKNVEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES.	0	21.0	18.0	4.2856962362466627E-10	4.2856962362466627E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	598	1006	1347	166	12	9966.886733953128	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	27.0	24.0	2.2859000307742375E-11	4.3432100584710516E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	253	651	874	47	6	2823.507289691406	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	14.0	12.0	5.289585240755688E-12	4.390355749827221E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1968	3112	4155	95	10	11758.489142984377	11758.439142984378	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFD(HRLID)[-.97]QSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	1	27.0	23.0	2.1535662860261555E-9	4.5144055543454924E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1517	2106	2814	72	13	10850.76821579297	10850.697179990235	6412	gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2]	10850.697179990235	1	95	.MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH.	0	22.0	14.0	1.5208007046331744E-10	4.562402113899523E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1056	1495	1999	186	10	11758.446418375002	11758.446418375002	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.(MQNQ)[-.97]RIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	1	36.0	28.0	2.2043110837073206E-9	4.61013015202088E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	406	812	1088	101	8	7825.9560800625	7825.9560800625	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.02]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	27.0	23.0	2.3746475099116953E-9	5.012145964661547E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	35	408	550	75	8	4507.49498846875	4507.49498846875	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLC)[-25.02]RNCKIVKRDGVIRVICSAEPKHKQRQG.	1	19.0	15.0	2.137315384288365E-8	5.29576238800802E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	120	505	679	30	4	2870.3652785156246	2870.3501951269573	6348	gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2]	97513.55948086304	106	129	A.EEQAQREAEEQARREAEEQAKREA.Q	0	13.0	13.0	2.4249726147771933E-13	5.358893360411791E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	708	1123	1503	60	8	6509.65576909375	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	17.0	14.0	2.6857030499954836E-10	5.371406099990967E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	150	537	722	59	11	6311.406461625	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	13.0	12.0	5.643895812117507E-10	5.643895812117507E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	399	805	1079	130	10	7825.921386460939	7825.921386460939	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.05]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	35.0	24.0	2.6504705393076843E-9	5.679085485280725E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	70	443	596	105	7	6310.404376660156	6310.404376660156	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTA(VT)[-.99]SLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	23.0	16.0	9.436160450849536E-9	6.35474351160435E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	555	962	1288	98	9	6394.593670082031	6394.578670082032	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE.	1	29.0	21.0	2.57426383286362E-9	6.476876066216793E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1133	1606	2147	59	13	8741.649566972657	8741.60516949219	3630	gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2]	8741.605169492188	1	76	.MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK.	0	18.0	15.0	3.265216291920887E-10	6.530432583841774E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	659	1073	1436	126	16	8970.9264640625	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	21.0	17.0	6.833348579281726E-10	6.833348579281726E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1911	2783	3716	22	10	12202.547870875002	12202.440977292483	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	12.0	10.0	6.914805150581446E-10	6.914805150581446E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1195	1675	2239	56	10	7272.032057304688	7271.982057304688	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQ(FNLRMQA)[15.99]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	18.0	17.0	1.831374981967462E-9	7.36623486722779E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	541	948	1270	106	11	6394.606034585937	6394.576034585937	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.00]VKVEE.	1	34.0	19.0	3.014451453890875E-9	7.633279464272473E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	673	1088	1456	61	10	8970.912991156254	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	12.0	12.0	7.855899818466331E-10	7.855899818466331E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	723	1138	1523	91	5	6378.580727859375	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	16.0	14.0	8.399809643982555E-10	8.399809643982555E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	680	1095	1466	101	7	6378.613783281251	6378.573545651854	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	21.0	17.0	9.927360661425484E-10	9.927360661425484E-10	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1704	2349	3138	60	14	11232.854329023437	11232.765684323733	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	16.0	13.0	5.148585863045751E-10	1.0297171726091502E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	591	999	1338	166	12	9966.883804265628	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	27.0	23.0	5.819999624175797E-11	1.0475999323516435E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1712	2359	3151	82	9	11232.84883890625	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	16.0	16.0	5.326943412784075E-10	1.065388682556815E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	726	1141	1527	71	13	9519.32697324219	9519.32697324219	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGD(KAAA)[1.04]LKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	1	17.0	16.0	7.309146261134732E-9	1.0672577748704356E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1723	2380	3179	23	13	11782.23072171875	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	13.0	11.0	1.1075916105168984E-9	1.1075916105168984E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	153	540	726	56	5	3467.688585433594	3467.673635678715	6348	gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2]	97513.55948086304	104	133	L.AAEEQAQREAEEQARREAEEQAKREAQQKA.E	0	16.0	15.0	4.308138484338138E-13	1.1139546958909411E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1533	2124	2838	63	12	9250.102718859378	9250.042718859379	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.M(NKSQLIEKIAAGADISKAAAGRALD)[16.03]AIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	22.0	19.0	3.0656540559064444E-9	1.1488931234184492E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	346	746	1000	64	10	9627.75647549219	9627.75647549219	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLK(NSQSA)[-.97]PGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	1	22.0	19.0	5.16422131333747E-11	1.1806293687043165E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	350	751	1007	119	16	8420.743956875	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	19.0	14.0	1.1905460711046154E-9	1.1905460711046154E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1243	1732	2315	62	8	6478.508300156249	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	15.0	14.0	6.362580715006351E-10	1.2725161430012702E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1875	2683	3583	24	14	12291.577601765624	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	20.0	12.0	6.442633927429692E-10	1.2885267854859384E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1062	1503	2010	184	9	11759.47395804687	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	34.0	24.0	7.04528653283998E-10	1.409057306567996E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	335	735	986	157	12	9627.737406890625	9627.737406890625	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	2	106	M.KITLLV(TLLFGLVFLTAVGATEKPLT)[-2071.27]PQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACLKKAA.	1	37.0	24.0	2.591468559942121E-10	1.4832867852653966E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1514	2103	2810	147	15	10849.759340062501	10849.759340062501	6412	gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2]	10850.697179990235	1	95	.(MQ)[42.01](LNITGHNVEITE)[635.36]ALREFVTTKFAKLEQYFERINQVYVVLKVEKVT(HISDATLHV)[-678.31]NGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH.	2	38.0	26.0	5.794961566786424E-11	1.5214700016663722E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	592	1000	1339	166	12	9966.883804265628	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	27.0	22.0	8.898597911688556E-11	1.60174762410394E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1959	3091	4127	53	11	8112.336685289062	8112.336685289062	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETL(P)[-.95]NTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	1	17.0	15.0	1.1204466807619818E-8	1.6352639759606657E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1408	1950	2606	30	8	9113.786409875	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	11.0	11.0	8.539595922420431E-10	1.7079191844840862E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1392	1931	2580	176	15	15458.081312117187	15457.916312117188	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGI(D)[-1.04]PNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	1	36.0	30.0	8.216579538507387E-9	1.7382750268133031E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	788	1205	1612	77	9	6537.647740671875	6537.637740671875	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.(MAKTIK)[28.02]ITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	1	29.0	18.0	3.0295134398191324E-8	1.8177080638914794E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	999	1429	1911	39	10	8113.3393226171875	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	14.0	12.0	9.211142294924901E-10	1.8422284589849802E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	144	531	714	30	5	4411.16398623047	4411.145437436524	3864	gi|16765337|ref|NP_460952.1| putative endoprotease [Salmonella typhimurium LT2]	16651.30049343628	2	45	M.ALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKY.A	0	14.0	11.0	2.827944535341047E-11	1.8947228386785013E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	689	1104	1478	101	6	6378.604213578125	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	22.0	14.0	1.9172155905877045E-9	1.9172155905877045E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1518	2107	2815	136	15	10850.768251195313	10850.658251195313	6412	gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2]	10850.697179990235	1	95	.(MQLNITGHNVEITEALREF)[42.01]VTTKFAKLEQYF(ERINQVYVVLKVEK)[-42.05]VTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH.	1	34.0	20.0	7.564071559745036E-9	1.957868176983985E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	154	541	727	57	5	3467.688585433594	3467.673635678715	6348	gi|16766584|ref|NP_462199.1| protein chain initiation factor IF-2 [Salmonella typhimurium LT2]	97513.55948086304	104	133	L.AAEEQAQREAEEQARREAEEQAKREAQQKA.E	0	15.0	15.0	7.659347076769551E-13	1.980476178898134E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1327	1828	2443	74	10	9514.221603976566	9514.221603976566	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALEST(L)[-.95]AAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	18.0	17.0	1.4473508256482653E-8	2.0282944096454926E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	302	702	942	140	17	8420.725725064454	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	25.0	16.0	2.045867136415238E-9	2.045867136415238E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1705	2350	3139	55	14	11232.854329023437	11232.765684323733	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	19.0	12.0	1.1035170333707584E-9	2.207034066741517E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1942	2886	3854	106	11	8966.760024238285	8966.695024238285	7662	gi|16767243|ref|NP_462858.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2]	8938.698942380372	1	84	.(MGG)[28.00]ISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV.	1	28.0	21.0	1.6181082007724842E-8	2.2294456718402613E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	935	1358	1816	37	13	9169.751283613283	9169.690111356202	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	2	83	M.ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	11.0	11.0	2.3766541694491567E-9	2.3766541694491567E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	116	501	674	105	11	6311.419889359375	6311.390989499511	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	18.0	14.0	2.547328485058258E-9	2.547328485058258E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	945	1368	1830	74	8	7264.6805204375	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	27.0	18.0	7.32751261449065E-11	2.5646294150717278E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1965	3109	4151	125	9	11759.475056679683	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	27.0	20.0	1.3144348764007829E-9	2.6288697528015658E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1685	2317	3095	53	17	17715.58762402344	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	16.0	13.0	2.6984007760232385E-9	2.6984007760232385E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	159	546	734	88	10	6266.611385460939	6266.601385460939	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIKL)[30.02]VSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	17.0	15.0	4.24707558459168E-8	2.7811681863629007E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	51	424	571	73	6	4416.47244509375	4416.47244509375	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVKKL(CRNCKIVK)[-116.04]RDGVIRVICSAEPKHKQRQG.	1	19.0	16.0	5.706545049444769E-8	2.8324158139294783E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1058	1497	2002	178	14	11759.486284101564	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	37.0	24.0	7.780456257251325E-10	3.11218250290053E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	398	804	1078	77	11	7825.920519152345	7825.920519152345	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKC(H)[-116.06]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	21.0	18.0	1.6739715462076422E-8	3.5332358572219787E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	733	1149	1538	149	17	9518.337297953129	9518.307297953128	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.(ANIKS)[42.01]AKKRAVQ(SEKARKHNASRRS)[-41.99]MMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	1	27.0	20.0	2.5614675443873534E-8	3.534133976226844E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	125	510	686	52	7	4078.237799207032	4078.2187406591793	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	21	57	D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	15.0	11.0	2.4440142793370646E-10	3.666021419005597E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	295	695	932	140	13	8420.730384484375	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	20.0	16.0	3.7256720501312515E-9	3.7256720501312515E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1659	2286	3054	196	14	12106.104969515625	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	30.0	23.0	1.8701344168267167E-9	3.740268833653433E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1177	1657	2215	132	17	12218.833067480471	12218.769315915528	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	16.0	15.0	1.945820929751288E-9	3.891641859502576E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1725	2382	3182	45	14	11782.23711759375	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	14.0	10.0	4.214104329800111E-9	4.214104329800111E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	924	1347	1802	56	10	9169.75754764844	9169.75754764844	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	11	89	K.(IV)[-2.22]SEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	19.0	15.0	1.9175180688396034E-10	4.24079187571657E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	772	1189	1591	196	13	12995.482292179688	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	30.0	23.0	4.377271446358698E-9	4.377271446358698E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1372	1904	2544	67	16	17503.396363625	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	14.0	14.0	4.4241398381457395E-9	4.4241398381457395E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	621	1030	1379	187	15	11527.35570405078	11527.31070405078	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	36.0	25.0	2.4017365499498337E-9	4.439811123925016E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	597	1005	1346	166	13	9966.895815375	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	31.0	21.0	2.357482061220906E-10	4.479215916319722E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1218	1706	2280	63	16	10304.6105715	10304.534986691895	7548	gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2]	10435.575483518067	2	93	M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK.	0	18.0	12.0	4.570582071094483E-9	4.570582071094483E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1660	2287	3055	140	11	12106.086636382814	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	26.0	21.0	2.446411007367701E-9	4.892822014735402E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1404	1945	2599	190	22	14956.465796851562	14956.465796851562	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGG(RGHKGQKSRSGGGVRRGFEG)[-.84]GQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	1	23.0	23.0	1.8431341649678894E-8	4.899583328817492E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	941	1364	1824	52	8	7264.66733684375	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	16.0	16.0	1.487556189740644E-10	4.908935426144125E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1420	1962	2622	67	9	9113.8201495	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	14.0	14.0	2.463958742605247E-9	4.927917485210494E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1361	1892	2528	64	22	17503.454270125007	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	14.0	13.0	5.016043030690089E-9	5.016043030690089E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	259	657	882	47	5	2823.503823503906	2823.499983029786	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	18.0	17.0	6.115769445012957E-11	5.198404028261014E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1305	1804	2411	34	14	10614.6123661875	10614.512960629883	1892	gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2]	10614.512960629883	1	94	.MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG.	0	9.0	9.0	2.645640312393267E-9	5.291280624786534E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	634	1043	1396	192	14	11527.337894601562	11527.312894601562	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(REVKRVALAD)[545.30]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	34.0	25.0	3.188879820230789E-9	5.894911371114533E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1277	1769	2364	65	13	14043.580420640625	14043.501604276124	6612	gi|16766715|ref|NP_462330.1| 30S ribosomal subunit protein S8 [Salmonella typhimurium LT2]	14174.542101102295	2	130	M.SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA.	0	11.0	11.0	6.152612945769564E-9	6.152612945769564E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	648	1058	1416	149	17	8970.932005445315	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	21.0	17.0	6.34083782711254E-9	6.34083782711254E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1427	1971	2634	109	13	16293.847628437503	16293.8076284375	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	24	171	A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRL(NDW)[-.88]ASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	1	24.0	22.0	1.969434935633417E-10	6.386590707532323E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1019	1451	1940	27	8	7283.63021946875	7283.620219468749	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	1	70	.MS(GKM)[-115.01]TGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	1	20.0	13.0	3.247030470972616E-8	7.292149752393142E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1057	1496	2000	143	11	11759.464533	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	26.0	22.0	3.803100513218767E-9	7.606201026437534E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1722	2379	3178	49	12	11782.235556312502	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	13.0	10.0	8.0487324801175E-9	8.0487324801175E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	742	1158	1550	125	18	9518.34039792969	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	23.0	16.0	8.507345557450808E-9	8.507345557450808E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	512	919	1231	57	12	7857.907916093751	7857.907916093751	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEI(T)[-84.07]ATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	16.0	12.0	6.301118342206979E-8	9.643729612632401E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1515	2104	2811	60	14	10849.75916977344	10849.70416977344	6412	gi|16766616|ref|NP_462231.1| putative sigma N modulation factor [Salmonella typhimurium LT2]	10850.697179990235	1	95	.(MQLNITGHNVEITEALREFVTTKFAKLEQY)[-.99]FERINQVYVVLKVEKVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH.	1	22.0	14.0	3.70931882722888E-8	9.738834774317024E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	117	502	675	51	8	11065.876618312499	11065.876618312499	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDIN(TNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKD)[1.01]GRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	22.0	17.0	3.842265262697805E-10	9.98288726990689E-9	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1068	1511	2020	14	7	7398.67485484375	7398.628027158203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	1	70	.MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	10.0	9.0	5.0694662827828124E-9	1.0138932565565625E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	735	1151	1540	148	14	9517.337641578126	9517.317641578125	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTA(Q)[-.97]INKLA.	1	25.0	20.0	7.764426607130277E-8	1.0274471879702471E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	786	1203	1610	47	15	9518.34904233594	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	10.0	10.0	1.032489323197544E-8	1.032489323197544E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	704	1119	1498	26	8	6509.636726125	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	11.0	10.0	5.289273654020323E-9	1.0578547308040647E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1553	2145	2866	17	13	12939.619775351563	12939.526521878663	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	2	115	M.STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE.	0	7.0	7.0	1.101519455504623E-8	1.101519455504623E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1389	1927	2575	49	14	15459.06673753125	15458.961076932375	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	0	16.0	14.0	1.1360841862752518E-8	1.1360841862752518E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	322	722	968	99	10	8420.750747640628	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	17.0	12.0	1.1524691294754778E-8	1.1524691294754778E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	467	874	1171	96	12	8246.032384218752	8246.032384218752	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATC(SC)[304.06]GNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	24.0	18.0	1.9579678701303828E-8	1.15392571904956E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	49	422	568	73	7	4416.462178371094	4416.462178371094	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.MKVRASVK(KLCRNCK)[-116.05]IVKRDGVIRVICSAEPKHKQRQG.	1	16.0	13.0	2.6876598044929573E-7	1.3340068406976204E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	651	1062	1422	45	17	11177.31769148047	11177.31769148047	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.(AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSG)[-.95]KVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	1	16.0	12.0	1.1638146124683839E-7	1.366825042226204E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	394	800	1072	66	12	7958.023375609375	7958.023375609375	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(T)[16.05]CSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	17.0	16.0	5.848925699639166E-8	1.4540928455503678E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	686	1101	1474	100	7	6378.613783281251	6378.573545651854	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	22.0	16.0	1.52147193498365E-8	1.52147193498365E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	681	1096	1467	103	7	6378.613783281251	6378.573545651854	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	20.0	16.0	1.5345292370330196E-8	1.5345292370330196E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1176	1656	2214	57	16	12217.830394749999	12217.92039475	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDIL(TYTNKKAAVLVKKVLESAI)[-.85]ANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	1	13.0	13.0	6.933123952700261E-8	1.5795894060345182E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	281	681	914	40	5	3455.576463851563	3455.56535931152	3040	gi|16764916|ref|NP_460531.1| putative outer membrane porin precursor [Salmonella typhimurium LT2]	39655.11356945556	22	52	A.AEVYNKDGNKLDLYGKVHAQHYFSDDNGSDG.D	0	14.0	10.0	6.833039840834006E-12	1.7104619900232834E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	248	646	867	69	11	9512.696017429691	9512.696017429691	738	gi|16763764|ref|NP_459379.1| phosphate starvation-inducible protein [Salmonella typhimurium LT2]	11830.048254208985	22	106	A.TEKPLTPQQQRMTTCNQQATAQALKGDARKTYLSDCLKNSQSAPGEKSLT(PQQQKMRE)[-116.03]CNVQATEQSLKGDDRSKFMSACLKKAA.	1	25.0	20.0	3.227891437329348E-10	1.728592535019891E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	692	1107	1482	97	6	6378.604213578125	6378.573545651856	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	21.0	13.0	1.772916582678304E-8	1.772916582678304E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	848	1267	1695	12	9	7733.042145816407	7732.998460965573	8942	gi|17233500|ref|NP_490541.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	35413.27932568115	246	313	M.TIAQQLEQKGIEKGIQLGEQRGIEKGRSEGEREATLKIARTMLQNCIDRNTVMKMTGLTEDDLAQIRH.	0	8.0	8.0	5.04906408126625E-10	1.8681537100685125E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	255	653	876	47	6	2823.507289691406	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	12.0	11.0	2.272336157911716E-10	1.8860390110667244E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1377	1909	2551	61	17	17503.39897532031	17503.29734631104	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	13.0	12.0	1.8865277956429052E-8	1.8865277956429052E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1710	2356	3147	48	10	11232.858164468751	11232.765684323733	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	17.0	12.0	9.434733192450416E-9	1.8869466384900832E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	887	1308	1750	89	15	10059.504360285155	10059.399360285155	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDAND(T)[-1.03]GSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	24.0	17.0	1.9580972610505825E-7	1.9222899001651533E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	840	1258	1683	47	12	8906.878176484375	8906.878176484375	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYI(T)[-85.01]ESGKIVPSRITGTRAKYQRQLRRAIKRARYLSLLPYTDRHQ.	1	16.0	13.0	7.398478217251042E-8	2.0734281076149313E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	304	704	944	140	18	8419.734165617188	8419.734165617188	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKP(T)[-.97]TERKRAKASAVKRHAKKLARENARRTRLY.	1	21.0	17.0	2.0308934821711203E-7	2.0763190539620265E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	624	1033	1383	186	19	11527.33752534375	11527.307525343751	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MK)[42.01](AREVKRVALAD)[372.24]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	35.0	23.0	1.4668629061674682E-8	2.0847891969818477E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1393	1932	2582	110	22	14957.376197242187	14957.307417111815	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	15.0	14.0	1.0544499322481588E-8	2.1088998644963176E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1711	2358	3150	50	10	11232.850840250001	11232.765684323733	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	17.0	11.0	1.0739335720624723E-8	2.1478671441249447E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1649	2276	3040	133	14	11210.834065351562	11210.704065351565	4466	gi|16765638|ref|NP_461253.1| putative inner membrane protein [Salmonella typhimurium LT2]	11629.921674924317	1	103	.(MRMSYQFGESR)[42.01](VDDDL)[-461.23]TLLSETLEEVLRSSGDPADQKYIELKARAEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLARR.	1	27.0	21.0	1.4286898154643541E-8	2.221919436933827E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1713	2360	3152	65	14	11232.862019453125	11232.862019453125	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLT(VSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQD)[-18.05]VNDLYELVL(A)[18.15]EVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	2	25.0	19.0	1.046674913791717E-9	2.302045944677205E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	802	1219	1631	41	12	9518.347066625003	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	9.0	9.0	2.3244227391129182E-8	2.3244227391129182E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	792	1209	1618	39	10	6537.654136546875	6537.654136546875	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.(MAKTIKIT)[28.04]QTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	1	19.0	14.0	3.8381523656298583E-7	2.3430581301810183E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1808	2564	3424	26	11	11486.880252414066	11486.847742276612	1792	gi|16764292|ref|NP_459907.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	11486.847742276612	1	107	.MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVGGRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTAVKTRR.	0	9.0	9.0	1.4068423481285669E-8	2.8136846962571338E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	696	1111	1487	98	7	6378.603102128907	6378.573545651854	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	21.0	16.0	2.9107467239247408E-8	2.9107467239247408E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1189	1669	2231	80	9	7272.031459769532	7272.031459769532	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELLNLLREQ(FNLRMQA)[16.04]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	24.0	20.0	7.55364655916075E-8	3.035446858033116E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	710	1125	1506	67	10	6508.6520813515635	6508.6520813515635	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHK(ATLLGLGLRRIGHTVERED)[-.96]TPAVRGMVNAVSFMVKVEE.	1	19.0	16.0	3.881285065569828E-7	3.1315718519629775E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	827	1245	1666	38	10	10658.622669359378	10658.552923398438	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	124	A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK.	0	12.0	12.0	8.54243637186748E-10	3.1607014575909676E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	396	802	1075	42	6	2555.4608369375	2555.4447614721685	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	22	M.PVIKVRENEPFDVALRRFKRS.C	0	16.0	12.0	7.798469676073609E-10	3.5872960509938604E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1349	1868	2496	53	18	13079.369962445313	13079.289797025149	6596	gi|16766707|ref|NP_462322.1| 30S ribosomal subunit protein S13 [Salmonella typhimurium LT2]	13210.330293851319	2	118	M.ARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVKISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK.	0	13.0	10.0	3.761458392196528E-8	3.761458392196528E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	995	1425	1906	127	17	14442.76554548047	14442.689371304932	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	15.0	15.0	2.055692688643122E-8	4.111385377286244E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1066	1508	2016	179	15	11759.475712203124	11759.412664609374	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	31.0	20.0	2.0949683214322937E-8	4.1899366428645875E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	773	1190	1592	125	11	12995.487810976563	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	19.0	17.0	4.824818104539281E-8	4.824818104539281E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	395	801	1074	42	6	2555.4608369375	2555.4447614721685	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	22	M.PVIKVRENEPFDVALRRFKRS.C	0	15.0	12.0	1.066593006769919E-9	4.906327831141627E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	380	784	1051	42	6	2554.4748139882813	2554.469813988281	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFD(VALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLAREN)[-5866.24]ARRTRLY.	1	18.0	14.0	6.050650809731824E-8	5.168050329393054E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	865	1285	1719	79	15	8948.887484414061	8948.887484414061	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.(ARYFRRRKFCRFTAE)[42.01]GVQEIDYKDIATLKNYITE(SGKIVPSRITGTRAKYQRQLRRAI)[-85.01]KRARYLSLLPYTDRHQ.	1	19.0	16.0	3.37746548506978E-7	5.373040151323319E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1971	3115	4159	51	8	11759.4629235	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	13.0	12.0	2.773791039921393E-8	5.547582079842786E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	265	665	892	47	6	2823.5085714296874	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	12.0	10.0	7.180412677593013E-10	5.67252601529848E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1951	3076	4107	34	7	7267.635672414062	7267.58753033203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	2	70	M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	13.0	11.0	5.69775647977125E-8	5.69775647977125E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	319	719	964	139	12	8420.755238609378	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	18.0	14.0	6.027166386167379E-8	6.027166386167379E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1784	2485	3319	49	9	8095.1817426601565	8095.15341015381	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	10.0	10.0	6.422932288068476E-8	6.422932288068476E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1689	2321	3100	37	17	17715.541969726564	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	11.0	10.0	6.906370227299835E-8	6.906370227299835E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1228	1716	2294	143	13	11206.309603070313	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	21.0	17.0	3.490118086297241E-8	6.980236172594481E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	834	1252	1675	57	15	10406.187342542968	10406.197342542968	1966	gi|16764378|ref|NP_459993.1| hypothetical protein STM1018 [Phage Gifsy-2]	11265.5324689917	8	96	L.MYQRMIFEEGKEPRLYSSQHDSKFIPI(SNNNG)[34.06]KVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD.	1	16.0	16.0	3.3415174703415197E-9	7.958590229100194E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1384	1921	2567	80	16	15458.072205062499	15458.0372050625	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.(SEALKILNNI)[-.92]RTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	1	21.0	18.0	3.7770891700220737E-7	7.986844614654717E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	549	956	1280	87	8	6525.63867925	6525.623679249999	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.01]VKVEE.	1	21.0	17.0	3.209531803136372E-7	8.237111868727628E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	400	806	1080	61	12	7825.920140125001	7825.915140125002	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.06]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	17.0	14.0	3.965499792477107E-7	8.369942780884328E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	551	958	1283	58	5	4274.243361039064	4274.226270871578	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	313	350	G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA.	0	12.0	12.0	2.207912619030813E-9	8.61085921422017E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	828	1246	1667	25	10	10658.622669359378	10658.552923398438	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	124	A.HAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK.	0	10.0	10.0	2.506691999890567E-9	9.274760399595097E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1797	2532	3382	25	8	8794.4573683125	8794.4573683125	816	gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2]	8926.463331418458	2	80	M.PKKNEAPASFETALSELEHIVTRLESGD(L)[-.97]PLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE.	1	12.0	12.0	5.271226867993255E-7	9.364995395935392E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	698	1113	1490	37	10	7655.9958793515625	7655.959249692384	702	gi|16763746|ref|NP_459361.1| putative periplasmic protein [Salmonella typhimurium LT2]	9913.159528928223	22	91	A.AEIMKKTDFDKVASEYTKIGTISTTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK.	0	10.0	9.0	3.502345352357453E-9	9.806566986600869E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	501	908	1216	45	8	4366.379621093749	4366.379621093749	6594	gi|16766706|ref|NP_462321.1| 30S ribosomal subunit protein S11 [Salmonella typhimurium LT2]	13936.400747495118	91	129	G.PGRESTIRALNAAGFRITNITDVTPIPH(N)[1.00]GCRPPKKRRV.	1	17.0	13.0	8.866801378608635E-9	9.932033215181839E-8	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	626	1035	1386	185	20	11527.327563796876	11527.302563796877	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MKAREVKRVALA)[414.25]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	35.0	24.0	5.772702962549508E-10	1.0568083395244722E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	625	1034	1384	180	18	11527.336622632814	11527.256622632814	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MK)[42.01]AREVKRVA(LAD)[372.19]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	30.0	22.0	8.563492559931291E-8	1.2045450440649993E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	72	445	599	105	14	6310.40300520703	6310.40300520703	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAV(TS)[-.99]LSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	18.0	14.0	1.840508540081688E-6	1.2393640241125613E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1861	2659	3551	22	16	12291.577454062499	12291.470907407227	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	17.0	8.0	6.339538280261776E-8	1.2679076560523552E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	725	1140	1526	89	14	9517.338496070313	9517.338496070313	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEM(Q)[-.95]PIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	1	19.0	15.0	9.991774537618574E-7	1.3059887910774879E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	815	1232	1648	44	11	9518.389376804691	9518.28966351074	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	9.0	8.0	1.405186714817303E-7	1.405186714817303E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1391	1930	2579	84	21	15458.11474351953	15458.019743519531	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLET(LEEMLEKLEVVVNERREEESAAAAE)[-.94]VEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	1	22.0	17.0	6.888685915928257E-7	1.4600259218740378E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	428	834	1118	87	15	7942.024505828127	7941.9762403540035	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	13.0	12.0	7.377108213393816E-8	1.475421642678763E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	785	1202	1608	57	7	8720.280818421876	8720.280818421876	7294	gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2]	11089.657293515625	22	97	A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQAL)[-116.01]GKVECPEM.	1	25.0	20.0	3.0765674759738086E-9	1.544271418585621E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	618	1027	1375	182	17	11527.328334667971	11527.31833466797	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MKAREVKRVALADKYFAKR)[42.01](AE)[372.25]LKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	38.0	22.0	1.1123154829808797E-7	1.5808861842535652E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1168	1647	2202	34	13	12513.604340015625	12513.507917600098	5146	gi|16765980|ref|NP_461595.1| ribosome stabilization factor [Salmonella typhimurium LT2]	12644.54841442627	2	112	M.TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVKDASFVEAEEE.	0	10.0	10.0	1.584718258159462E-7	1.584718258159462E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	326	726	974	140	14	8420.739832117188	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	13.0	12.0	1.605782128338237E-7	1.605782128338237E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1974	3118	4163	72	10	11758.472053140627	11758.472053140627	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFD(HR)[-.94]LIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	1	19.0	16.0	8.318637461887739E-7	1.7422821802088178E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1906	2767	3695	88	13	12201.572673734378	12201.572673734378	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVA(AGPAEAAEEKTEFD)[-.87]VILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	17.0	15.0	6.611970603048639E-7	1.824387098319913E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	793	1210	1619	33	10	6537.654136546875	6537.639136546874	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.(MAKTIKIT)[28.03]QTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	1	12.0	9.0	3.0933140914813003E-6	1.888360346543817E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	466	873	1170	95	12	8246.032384218752	8246.032384218752	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATC(SCGNVIKTHSTVGHDLNLD)[304.06]VCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	21.0	16.0	3.5365780332888233E-7	2.0842774860069232E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1087	1541	2060	51	7	7446.832323546876	7446.832323546876	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.(MS)[1.02]KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[-.96].	2	28.0	21.0	2.029387313486927E-8	2.1090963249879352E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1131	1604	2144	48	13	8740.668854082032	8740.668854082032	3630	gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2]	8741.605169492188	1	76	.MKTNLAQ(L)[-.94]EQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK.	1	17.0	15.0	1.1709173488567996E-6	2.1668221402332235E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	544	951	1274	105	8	6394.602594031249	6394.602594031249	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.03]VKVEE.	1	26.0	19.0	8.80321164950888E-7	2.2250764739107928E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1192	1672	2235	98	7	7272.032889210937	7272.032889210937	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNT(ELLNLLREQFNLRMQAASGQLQQSHLLKQVRRD)[16.05]VARVKTLLTEKAGA.	1	22.0	20.0	5.617417497948818E-7	2.2594617183593945E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1791	2509	3351	14	7	8119.04828440625	8119.04828440625	3764	gi|16765287|ref|NP_460902.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8234.038629727784	2	74	M.STPDFSTAENNQELATEVNCLKAMLTLML(QAMGQADAGRVILKMEKQIAQMDDEAQA)[16.05]AVFSSTVKQIKQAYRQ.	1	9.0	9.0	7.508104564049667E-7	2.4073383592910176E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1402	1943	2596	66	22	14956.452369117187	14956.357369117188	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANII(GI)[-.95]QIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	1	12.0	12.0	1.0662807817359932E-6	2.832565832471002E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1067	1510	2019	16	7	7398.67485484375	7398.628027158203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	1	70	.MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	9.0	7.0	1.4631556969040956E-7	2.9263113938081913E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1495	2072	2768	27	8	8375.30414	8375.250936704102	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	12.0	10.0	6.156366149342154E-9	3.078183074671077E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	585	993	1330	118	15	8986.908391472656	8986.908391472656	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVE(SEKRFVTLR)[16.03]VSAKGMRIIDKKGIETVLSELRARGEKY.	1	19.0	17.0	8.932792581499377E-7	3.117044243314751E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	4	376	507	89	9	5377.083522140625	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	12.0	11.0	1.5749392449105495E-7	3.149878489821099E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	779	1196	1600	112	11	12995.442156679688	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	17.0	15.0	3.191483220273419E-7	3.191483220273419E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	954	1379	1844	64	10	9300.796338007816	9300.796338007816	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	1	83	.(M)[-2.01]ANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREE(MIKRSGRTTVPQIF)[2.08]IDAQHIGGCDDLYALDARGGLDPLLR.	2	21.0	21.0	1.5404282272526347E-8	3.2135279085688723E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	936	1359	1818	31	7	7264.656912648437	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	13.0	12.0	1.0142771435130028E-8	3.3471145735929094E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1055	1494	1998	178	15	11759.47479667578	11759.412664609374	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	28.0	19.0	1.6869411305751457E-7	3.3738822611502914E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	194	589	791	22	7	6250.612590578125	6250.607590578125	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(AKGIREKIK)[14.03]LVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	9.0	9.0	2.969016539635019E-6	3.604165748984334E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1381	1918	2563	75	15	11230.051093550781	11229.943952756348	2590	gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2]	11360.98444958252	2	99	M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE.	0	12.0	11.0	3.7682010905381474E-7	3.7682010905381474E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	332	732	982	47	10	7210.265708882812	7210.254739957275	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	9.0	8.0	3.8080467364094595E-7	3.8080467364094595E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1119	1586	2120	72	9	9229.065585898436	9229.012678342287	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	13.0	12.0	1.9070748213000867E-7	3.8141496426001734E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1883	2720	3632	66	13	9876.404442332032	9876.304434018555	736	gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10106.413343625489	3	88	V.MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH.	0	17.0	11.0	2.136293348786375E-8	3.8453280278154747E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	617	1026	1374	187	16	11527.333474437499	11527.3084744375	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(MKAREVKRVALAD)[414.25]KYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	40.0	24.0	2.12040878879191E-9	3.881898049448892E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1237	1725	2306	96	17	11206.293621628909	11206.238477902834	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	16.0	12.0	1.970402053665828E-7	3.940804107331656E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1910	2781	3714	35	11	12215.557570648438	12215.557570648438	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQIIEA)[55.13]VSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	17.0	12.0	1.606924278372176E-6	4.024017391583078E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	620	1029	1378	178	17	11527.352199414065	11527.312199414064	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KA(REVKRVALA)[545.30]DKYFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	28.0	21.0	2.2203296240922749E-7	4.104465231222399E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	10	382	515	75	6	4548.516011195313	4548.516011195313	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.(MKVRAS)[42.01](VKKLCRNCKIVKRD)[-26.01]GVIRVICSAEPKHKQRQG.	1	16.0	14.0	2.936164701567211E-6	4.152689877103218E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	456	863	1156	16	11	7977.960023304687	7977.960023304687	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[35.98]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	9.0	8.0	3.178099616072172E-6	4.382252334845537E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1063	1504	2011	166	8	11759.445345375	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	20.0	18.0	2.2052480496462105E-7	4.410496099292421E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	721	1136	1520	90	6	6509.643465625	6509.614042478028	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	16.0	12.0	2.2822048985917338E-7	4.5644097971834676E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1136	1609	2151	19	13	10818.43326585547	10818.344553189698	6004	gi|16766412|ref|NP_462027.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10949.38505001587	2	91	M.SRTIFCTYLQRDAEGQDFQLYPGELGKRIYNEISKDAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEGKDVHIEGYTPEDKK.	0	8.0	7.0	4.858502131649474E-7	4.858502131649474E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	164	551	740	104	9	6265.601571617189	6265.601571617189	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[29.02]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	15.0	13.0	7.005046534528787E-6	5.00774466807287E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	713	1128	1510	54	11	6509.641997734375	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	13.0	10.0	2.643869449865916E-7	5.287738899731832E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	527	934	1251	105	11	6394.599992105468	6394.599992105468	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGM)[16.03]VNAVSFMVKVEE.	1	31.0	17.0	2.1031376342797616E-6	5.306081187403069E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1236	1724	2304	179	19	11206.303239550783	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	28.0	15.0	2.68383448252165E-7	5.3676689650433E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1476	2043	2730	41	12	9387.911537750002	9387.79499645752	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	8.0	8.0	2.7615574134602886E-7	5.523114826920577E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1467	2023	2703	34	14	15292.621965312499	15292.556965312499	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEA(P)[129.13]QEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE.	1	17.0	14.0	1.006920337734426E-6	6.014446502379238E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1782	2483	3316	75	8	8095.18553965625	8095.18553965625	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQL(LSELLSVLEKHKAPTDLSLMVL)[-.93]GNMVTNLINTSVA(PAQRQAIANSFARALQSS)[.97]ISEDNAH.	2	19.0	19.0	5.231583294445255E-8	6.130471655731084E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1708	2353	3143	39	15	11231.859260054687	11231.859260054687	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	2	98	M.FEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYEL(V)[130.13]LAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	1	17.0	11.0	1.6397431716875794E-6	6.287358787145626E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	812	1229	1644	59	13	9517.376655859378	9517.341655859376	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.(ANIKS)[42.01](AKKRAVQSEKARKHNASRRS)[-42.96]MMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	1	11.0	11.0	5.036490726639364E-6	6.596328378495315E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1395	1934	2584	61	21	14957.389698828129	14957.307417111817	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	9.0	9.0	3.3234433480850276E-7	6.646886696170055E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1477	2044	2731	38	12	9387.911537750002	9387.911537750002	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAG(IVA)[-18.99]TGVTQRNGVLVFSGD(Y)[19.11]FLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	2	17.0	14.0	4.153761937150242E-8	6.683922864545658E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1880	2713	3623	60	13	9875.40627338672	9875.40627338672	736	gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10106.413343625489	3	88	V.MKNLIAELLLKLAQKEEESKELVAQVEAL(E)[17.19]IIVTAMLRNMAQNE(Q)[-18.09]EMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH.	2	25.0	18.0	3.055462912765547E-10	6.99755779199657E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	360	762	1022	141	15	9044.940932210939	9044.898699002684	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	21.0	15.0	7.444902036255001E-7	7.444902036255001E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1424	1968	2630	36	15	16294.830512960938	16294.684805112307	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	24	171	A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	0	9.0	9.0	3.7456251360289585E-8	7.491250272057917E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	683	1098	1470	96	7	6378.603956621095	6378.573545651854	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	20.0	14.0	7.560166051318643E-7	7.560166051318643E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	548	955	1279	89	6	6394.603230015624	6394.633230015624	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.06]VKVEE.	1	21.0	15.0	3.0140984385956807E-6	7.618355428435775E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	783	1200	1606	46	9	6537.6422475078125	6537.6422475078125	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.(MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED)[28.03]TPAVRGMVNAVSFMVKVEE.	1	20.0	13.0	1.2575865603009921E-5	7.686903479372991E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1796	2531	3380	100	7	8795.478682398438	8795.422834592286	816	gi|16763804|ref|NP_459419.1| exonuclease VII small subunit [Salmonella typhimurium LT2]	8926.463331418458	2	80	M.PKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQLARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE.	0	16.0	15.0	8.086625761422976E-7	8.086625761422976E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	596	1004	1344	166	14	9965.901356757813	9965.796356757814	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	2	113	M.NNTLSK(RLCLTAMLTLAAVVYTTSAFAETSKLVI)[-2912.57]ESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	1	32.0	22.0	9.716748049997814E-8	8.115723240767657E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1051	1487	1988	114	18	12991.27940827344	12991.187040524905	5162	gi|16765988|ref|NP_461603.1| 50S ribosomal subunit protein L19 [Salmonella typhimurium LT2]	13122.227537351075	2	115	M.SNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRERTGKAARIKERLN.	0	13.0	12.0	8.27440127267736E-7	8.27440127267736E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1907	2768	3696	46	14	12201.582487578125	12201.582487578125	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(SITKDQI)[42.01]IEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVA(A)[-.86]GPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	14.0	12.0	3.0695257287577613E-6	8.465489921333818E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	660	1074	1438	149	17	8969.941099683596	8969.941099683596	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKK(GIE)[-.94]TVLSELRARGEKY.	1	20.0	16.0	5.794180243704627E-6	8.893548441000755E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1370	1902	2542	36	19	17503.405541484375	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	8.0	7.0	8.935916684577766E-7	8.935916684577766E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	434	841	1127	75	13	7825.930015003906	7825.930015003906	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITA(TCSCGNVIKTHSTVGHDLNLDVCGKCH)[-116.05]PFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	20.0	15.0	4.2506732988349154E-6	8.971855794564755E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1908	2769	3698	29	13	12202.558940824221	12202.44097729248	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	12.0	8.0	9.316536499912681E-7	9.316536499912681E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	329	729	978	23	13	7210.284957542971	7210.254739957276	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	7.0	5.0	9.458271914871017E-7	9.458271914871017E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1373	1905	2546	125	17	17502.463062234372	17502.288062234376	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	1	167	.MAHIEKQAGELQEKLIAVNRVSKTVKGGR(IFSFTAL)[-90.04]TVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	1	20.0	18.0	1.4610250251813441E-6	9.954079257191001E-7	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1194	1674	2238	21	8	7272.031106375	7272.031106375	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEEL(NTELLNLLREQFNLRMQAASGQLQQS)[16.04]HLLKQVRRDVARVKTLLTEKAGA.	1	9.0	9.0	2.5457612678969965E-6	1.0230188798771263E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1140	1613	2156	64	15	12762.052158765624	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	12.0	10.0	5.501332462552775E-7	1.100266492510555E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	639	1048	1403	27	6	3656.9929979765634	3656.971136289063	3568	gi|16765185|ref|NP_460800.1| heat shock protein [Salmonella typhimurium LT2]	31915.606332974854	262	293	C.INGKSKSLSELFMTHPPLDKRIEALRSGEYLK.	0	8.0	7.0	5.2985044296697386E-8	1.1126859302306451E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1720	2377	3175	19	11	11782.18021024219	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	6.0	6.0	1.2571107282457329E-6	1.2571107282457329E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1727	2384	3184	66	15	11782.236616496093	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	10.0	10.0	1.2861537009237816E-6	1.2861537009237816E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1837	2622	3502	11	11	12160.538772820317	12160.430410581057	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	8.0	7.0	1.3471232635817496E-6	1.3471232635817496E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	363	765	1026	134	14	9044.944546101562	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	20.0	15.0	1.3525909684164707E-6	1.3525909684164707E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1151	1624	2171	136	16	12762.051474562499	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	19.0	14.0	6.83025125929039E-7	1.366050251858078E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1246	1735	2319	32	8	6478.510741562499	6478.460607724609	3498	gi|16765150|ref|NP_460765.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	6478.460607724609	1	57	.MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETMKGLEGYHVKIKLL.	0	10.0	10.0	6.891411466066301E-7	1.3782822932132603E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1307	1806	2414	103	16	10613.600743875	10613.600743875	1892	gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2]	10614.512960629883	1	94	.MTKSELIERLATQQSHIPA(K)[-.91]AVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG.	1	17.0	15.0	8.034748185620778E-6	1.392906359830242E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	14	386	520	87	11	5377.0877384511705	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	11.0	10.0	7.005473360307385E-7	1.401094672061477E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	724	1139	1524	59	12	6509.6459522031255	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	14.0	9.0	7.022871957510413E-7	1.4045743915020826E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	953	1377	1842	88	10	9300.796338007816	9300.730608182374	7154	gi|16766987|ref|NP_462602.1| glutaredoxin 3 [Salmonella typhimurium LT2]	9300.730608182374	1	83	.MANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR.	0	16.0	15.0	7.268298901048616E-7	1.4536597802097232E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	732	1147	1535	149	17	9518.34248594141	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	18.0	14.0	1.4585145310623103E-6	1.4585145310623103E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1359	1888	2523	25	13	9516.207893652347	9516.207893652347	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	1	90	.MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGD(A)[1.04]VQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	1	9.0	8.0	9.88776520964637E-6	1.4618265722227885E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1643	2269	3031	74	11	9261.102626605472	9261.102626605472	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MNKSQLIEKI)[27.09]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	14.0	13.0	1.3389077181466044E-5	1.4667809271830782E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1018	1448	1936	25	9	8113.319071761719	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	10.0	8.0	7.975698007768091E-7	1.5951396015536182E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	880	1301	1740	66	14	10060.501321343749	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	12.0	10.0	1.6843010064703358E-6	1.6843010064703358E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1663	2290	3059	196	15	12106.086951328125	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	25.0	19.0	8.551657504368956E-7	1.7103315008737912E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1069	1520	2032	27	8	7330.78061909375	7330.78061909375	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	2	69	M.SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVT(AL)[15.04].	1	15.0	11.0	1.1833922114618964E-5	1.8016038578425434E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	715	1130	1512	46	16	10294.728744562499	10294.718744562499	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTI(AVHNGRQHVPV)[16.06]FVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	1	10.0	10.0	4.622618964390968E-6	1.8863407593903104E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1409	1951	2607	23	9	9113.802022058593	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	7.0	7.0	9.595129301429332E-7	1.9190258602858664E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1944	2888	3856	32	12	8966.764650093754	8966.694650093754	7662	gi|16767243|ref|NP_462858.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2]	8938.698942380372	1	84	.(MGG)[28.00]ISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV.	1	15.0	12.0	1.4034071886178095E-5	1.932927624772626E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1772	2473	3303	12	9	8095.215800277344	8095.15341015381	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	7.0	5.0	2.0228212660656575E-6	2.0228212660656575E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1397	1936	2587	89	21	14955.408131445316	14955.223131445315	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.(MRLNTL)[-2.08]SPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	1	13.0	13.0	8.098021314844852E-6	2.0384035346291385E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1396	1935	2586	32	20	14957.390138890627	14957.307417111815	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	7.0	7.0	1.0589808383237469E-6	2.1179616766474938E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	666	1081	1447	149	17	8970.920591871096	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	17.0	13.0	2.166322646303902E-6	2.166322646303902E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	199	594	798	41	7	3734.9746696132815	3734.9691183142086	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	39	70	G.KCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	0	12.0	9.0	8.024377396874719E-8	2.166581897156174E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1356	1877	2508	21	9	9169.596610757812	9169.548193173829	6908	gi|16766864|ref|NP_462479.1| putative RNA-binding protein [Salmonella typhimurium LT2]	9300.58869	2	81	M.SDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIADDPATTRDIPGFCTFMEHDLLAQETEGLPYRYLLRKAH.	0	5.0	5.0	1.134744155315664E-6	2.269488310631328E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	349	750	1006	116	13	8420.74546016797	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	11.0	10.0	2.290751008070422E-6	2.290751008070422E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1371	1903	2543	89	22	17503.416672468757	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	14.0	10.0	2.419648359655896E-6	2.419648359655896E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1234	1722	2302	178	19	11206.303239550783	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	25.0	15.0	1.2855319970876196E-6	2.571063994175239E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	674	1089	1458	57	8	6378.59771821875	6378.573545651855	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	11.0	9.0	2.593958367805542E-6	2.593958367805542E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	539	946	1267	93	6	6394.600300328124	6394.630300328124	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSF(M)[16.06]VKVEE.	1	21.0	15.0	1.036618178494538E-5	2.6153210925320917E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1331	1834	2451	83	23	14686.084263238281	14685.97115154785	6458	gi|16766639|ref|NP_462254.1| 30S ribosomal subunit protein S9 [Salmonella typhimurium LT2]	14817.011648374024	2	130	M.AENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR.	0	15.0	10.0	1.3524752301093607E-6	2.7049504602187215E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	740	1156	1547	132	16	9518.3560485625	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	17.0	12.0	2.7337184456919332E-6	2.7337184456919332E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1	373	503	89	11	5377.089416917967	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	12.0	9.0	1.3949057366645402E-6	2.7898114733290803E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1400	1941	2594	46	20	14957.452394750002	14957.307417111815	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	8.0	8.0	1.4291916108158008E-6	2.8583832216316016E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	595	1003	1343	166	11	9966.905728703128	9966.83842297119	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	19.0	18.0	1.529838695441525E-7	2.9066935213388976E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	126	511	687	35	7	4078.237799207032	4078.2187406591793	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	21	57	D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	9.0	7.0	1.940122877244995E-7	2.9101843158674927E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	712	1127	1508	22	7	6509.6371661875	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	10.0	7.0	1.4744229680268165E-6	2.948845936053633E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	662	1076	1440	11	18	11178.326345656253	11178.269117551268	6618	gi|16766718|ref|NP_462333.1| 50S ribosomal subunit protein L24 [Salmonella typhimurium LT2]	11309.309614377442	2	104	M.AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK.	0	4.0	4.0	3.242033983735569E-6	3.242033983735569E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	382	786	1054	42	6	2554.472250511719	2554.472250511719	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	22	M.PVIKVRENEPFD(VALRRFKRS)[-.97].C	1	17.0	14.0	1.6029995119814979E-7	3.3601892323975447E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	579	987	1322	110	11	9850.82300603125	9850.82300603125	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFD(NRDKCEQSANINAYWEPNTLR)[-116.02]CLDRRTGRVITP.	1	26.0	19.0	6.127653783232806E-8	3.369003806325854E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	12	384	518	89	12	5377.092089648438	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	11.0	9.0	1.7165650958542648E-6	3.4331301917085297E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1203	1688	2256	138	15	15853.369312054685	15853.248838620606	444	gi|16763615|ref|NP_459230.1| outer membrane protein H precursor [Salmonella typhimurium LT2]	17894.370474057618	21	161	A.ADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFEKDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQVK.	0	18.0	17.0	1.0161434410242726E-7	3.454887699482527E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1201	1686	2254	165	16	15853.389501874999	15853.369501874999	444	gi|16763615|ref|NP_459230.1| outer membrane protein H precursor [Salmonella typhimurium LT2]	17894.370474057618	2	161	M.(KKWLLAAGLGLAMVTSAQA)[42.01]ADKIAIVNMGNLFQQVAQKTGVSNTLENEFKGRAAELQKMETDLQSKMQRLQSMKA(GSDRTKLEKDVMSQRQTFAQKAQAFEKDRARRS)[-1951.97]NEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQVK.	1	22.0	21.0	3.732880074540428E-7	3.574009751044291E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1746	2415	3226	33	18	13493.239485140626	13493.076029019776	8572	gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2]	13624.116525845948	2	128	M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR.	0	6.0	6.0	3.777082682328135E-6	3.777082682328135E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	550	957	1282	57	5	4274.243361039064	4274.226270871578	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	313	350	G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA.	0	12.0	10.0	9.798593357013734E-8	3.8214514092353566E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	381	785	1052	42	5	2554.4745826640624	2554.464582664062	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	22	M.PVIKVRENEPFDVALRR(FKRS)[-.98].C	1	13.0	11.0	1.8593735358394826E-7	3.8971505257706015E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	805	1222	1635	44	12	9518.333883031253	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	8.0	7.0	4.0576364813198985E-6	4.0576364813198985E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1896	2742	3662	20	16	12202.5481601875	12202.440977292481	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.(S)[42.01]ITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	8.0	5.0	4.063910257335589E-6	4.063910257335589E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1179	1659	2218	76	18	12218.820359351565	12218.769315915526	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	1	110	.METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	10.0	9.0	2.1293207931491E-6	4.2586415862982E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	6	378	510	89	13	5377.086858326172	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	10.0	9.0	2.5568803649899405E-6	5.113760729979881E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	475	882	1182	130	14	7825.963083242187	7825.963083242187	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDV(CGKCHPFFTGKQRVVD)[-116.01]TGGRVERFNKRFSIPGSK.	1	23.0	15.0	2.4920262283396714E-5	5.259896111767719E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	5	377	508	89	9	5377.083522140625	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	11.0	10.0	2.702971351216028E-6	5.405942702432056E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1380	1917	2562	26	16	11230.0562076875	11229.943952756348	2590	gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2]	11360.98444958252	2	99	M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE.	0	7.0	6.0	5.423775775191486E-6	5.423775775191486E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1612	2235	2986	13	10	8824.824755320316	8824.76904888672	8554	gi|16767695|ref|NP_463310.1| putative regulatory protein [Salmonella typhimurium LT2]	8955.809545712891	2	80	M.ATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRMPVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL.	0	5.0	5.0	5.622008270310007E-6	5.622008270310007E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1202	1687	2255	65	21	15853.383517382812	15853.383517382812	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGA(Y)[6070.57]VLINDTDGKIIKAYDGEIFYHR.	1	23.0	15.0	1.653676945795197E-9	5.6643212298695055E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	888	1309	1751	103	17	10060.505677425783	10060.428564267577	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	15.0	10.0	5.826586815643193E-6	5.826586815643193E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	379	783	1050	42	5	2554.4745826640624	2554.464582664062	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	22	M.PVIKVRENEPFDVALRR(FKRS)[-.98].C	1	17.0	11.0	2.87680346916054E-7	6.029630914003473E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1656	2283	3050	24	13	12106.045228914063	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	7.0	7.0	3.0190311194578837E-6	6.038062238915767E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1410	1952	2608	16	9	9113.802022058593	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	5.0	5.0	3.140793881889371E-6	6.281587763778742E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	522	929	1244	92	7	6394.588934972656	6394.588934972656	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVERED(TPAVRGMVNA)[16.02]VSFMVKVEE.	1	20.0	15.0	2.5985041859672046E-5	6.519969444716982E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1531	2122	2835	31	11	9249.118356675783	9249.118356675783	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	1	90	.(MNKSQLIEKI)[15.11]AAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	1	8.0	8.0	2.7122104831577598E-5	6.720973280096081E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	124	509	684	84	10	6326.401408523438	6326.401408523438	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAV(TSL)[15.01]SVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	16.0	11.0	5.270824168891487E-5	6.912556287070803E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1462	2018	2696	29	14	15163.544098453125	15163.423299985352	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE.	0	8.0	7.0	3.5785651432682716E-6	7.157130286536543E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	7	379	511	89	9	5377.080226242188	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	10.0	10.0	3.58501774570312E-6	7.17003549140624E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1479	2048	2736	37	9	9387.833390164062	9387.794996457518	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	9.0	8.0	3.6258462777486117E-6	7.251692555497223E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	330	730	979	30	10	7210.276084859374	7210.254739957275	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	7.0	5.0	7.405168065425826E-6	7.405168065425826E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1165	1643	2196	42	10	10929.704147328126	10929.704147328126	3624	gi|16765215|ref|NP_460830.1| putative exported protein [Salmonella typhimurium LT2]	12834.850965695801	20	117	A.APQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVIN(PS)[-.96]TLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS.	1	22.0	16.0	2.9103998463072385E-7	7.455410889921702E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	118	503	676	53	8	11065.876618312499	11065.876618312499	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKK(VETGNGVNND)[1.01]VNTKTDGTTQ.	1	18.0	14.0	3.0272945684513665E-7	7.865448724493313E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	280	680	912	72	11	6293.628813699219	6293.628813699219	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIRE(KIKLVSS)[-73.99]AGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	11.0	10.0	9.221805842130407E-5	7.97473746300926E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	841	1259	1684	93	14	8905.873390109375	8905.873390109375	8452	gi|16767639|ref|NP_463254.1| 30S ribosomal subunit protein S18 [Salmonella typhimurium LT2]	9122.931947904053	2	75	M.ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQ(RQLRRAIKRARYLSLL)[-86.02]PYTDRHQ.	1	15.0	12.0	2.9743030578470115E-5	8.225825093086224E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	146	533	716	22	8	4490.436883	4490.436883	6598	gi|16766708|ref|NP_462323.1| 50S ribosomal subunit protein X [Salmonella typhimurium LT2]	4532.514040189209	1	38	.M(KVRASVKKLCRNCKIVKRDGVIRVIC)[-42.08]SAEPKHKQRQG.	1	9.0	7.0	2.992345390833366E-4	8.378254618636691E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1964	3107	4148	30	12	11759.48508903125	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	8.0	7.0	2.0946354354644495E-6	8.378541741857798E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1394	1933	2583	94	21	14957.389698828129	14957.307417111817	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	10.0	10.0	4.2380519466170306E-6	8.476103893234061E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1863	2661	3554	14	15	12291.559034261718	12291.470907407229	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	6.0	6.0	4.299931129906728E-6	8.599862259813457E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1061	1502	2008	184	16	11759.510184249999	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	23.0	16.0	2.173595291408128E-6	8.694381165632511E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1124	1593	2130	79	9	9229.077670859373	9229.012678342287	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	12.0	11.0	4.462245574035758E-6	8.924491148071516E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1423	1967	2628	46	10	9113.81763424219	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	8.0	8.0	4.564443072731187E-6	9.128886145462374E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1287	1780	2379	95	17	11642.059642910159	11642.040060239258	8534	gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2]	13903.336981015625	23	128	A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR.	0	19.0	14.0	2.347461487775572E-7	9.389845951102287E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	731	1146	1534	19	15	9518.337140480471	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	6.0	6.0	9.504059053924608E-6	9.504059053924608E-6	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	184	573	770	90	11	6348.56906028125	6348.56906028125	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MA(KGIREKIKLVSSAG)[-19.05]TGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	12.0	11.0	1.8832962013862355E-4	1.0001769755591732E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	327	727	975	135	14	8420.739832117188	8420.707170682374	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	0	11.0	10.0	1.0011280041416698E-5	1.0011280041416698E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	876	1297	1735	67	15	10060.492214289061	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	12.0	8.0	1.0038760771873413E-5	1.0038760771873413E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1870	2668	3563	26	17	12289.560900718752	12289.520900718751	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.(MSITKDQ)[-1.95]IIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	8.0	8.0	3.697453874411378E-5	1.010364534156691E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	577	985	1319	31	4	3091.434616453125	3091.4212324194305	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	48	A.APKDNTWYAGAKLGWSQYHDTGFIHND.G	0	7.0	6.0	4.351110455351521E-9	1.0283748607055009E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	88	466	627	66	14	11080.9325716875	11080.9325716875	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTA(V)[4769.54]TSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	15.0	12.0	7.124560641063772E-7	1.0475852227038638E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1217	1705	2279	33	14	10304.6026625625	10304.534986691897	7548	gi|16767186|ref|NP_462801.1| peptidyl-prolyl cis-trans isomerase C [Salmonella typhimurium LT2]	10435.575483518067	2	93	M.AKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK.	0	10.0	6.0	1.0966634236082083E-5	1.0966634236082083E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	889	1310	1752	126	18	10060.497485898437	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	18.0	11.0	1.1109919428074902E-5	1.1109919428074902E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1230	1718	2296	31	12	11206.310409343752	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	11.0	8.0	5.607122296605824E-6	1.1214244593211648E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	668	1083	1450	149	19	8970.916782058595	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	17.0	12.0	1.1333312055626966E-5	1.1333312055626966E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	775	1192	1595	76	12	12995.51654571875	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	11.0	11.0	1.1525390756977913E-5	1.1525390756977913E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	547	954	1278	42	9	6525.639154714844	6525.6141547148445	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVS(FM)[16.00]VKVEE.	1	14.0	11.0	4.632731482076543E-5	1.1900594632857176E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	819	1237	1655	19	5	5143.510761429689	5143.484304624019	3658	gi|16765232|ref|NP_460847.1| putative peptidase [Salmonella typhimurium LT2]	48938.380041318356	51	97	K.TIELEKSEIRSLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHE.Y	0	8.0	8.0	3.4269467522241016E-9	1.1907314208406772E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	594	1002	1342	166	13	9965.907961371095	9965.797961371094	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	2	113	M.NNTLSK(RLCLTAMLTLAAVVYTTSAFAETSKLVI)[-2912.57]ESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	1	28.0	20.0	1.5167094324301186E-6	1.2668018072432581E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	857	1277	1708	45	15	9699.296621578125	9699.24207897705	6622	gi|16766720|ref|NP_462335.1| 30S ribosomal subunit protein S17 [Salmonella typhimurium LT2]	9830.282575803223	2	84	M.TDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL.	0	11.0	8.0	1.2694414514062158E-5	1.2694414514062158E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1111	1571	2100	143	11	9229.068062707032	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	11.0	11.0	6.360082836257411E-6	1.2720165672514822E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	459	866	1160	99	15	7824.960629019534	7824.960629019534	7898	gi|16767362|ref|NP_462977.1| 50S ribosomal subunit protein L31 [Salmonella typhimurium LT2]	7941.9762403540035	1	70	.MKKGIHPNYVE(ITATCSCGNV)[-117.02]IKTHSTVGHDLNLDVCGKCHPFFTGKQRVVDTGGRVERFNKRFSIPGSK.	1	17.0	12.0	6.1206874922891E-5	1.2918877006959243E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	804	1221	1634	27	15	9518.336224953127	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	6.0	6.0	1.3229109350279425E-5	1.3229109350279425E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	763	1179	1578	55	18	10278.712617648436	10278.658636289065	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	7.0	6.0	1.414462662728955E-5	1.414462662728955E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1146	1619	2164	177	21	12762.069659992187	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	21.0	13.0	7.232994032764013E-6	1.4465988065528026E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	96	476	640	184	14	11063.960647859374	11063.915647859374	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNV(A)[-.95]PNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	27.0	22.0	5.628337760869272E-7	1.4518020717335886E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1103	1559	2084	52	10	9229.073934898439	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	9.0	9.0	7.882146059918802E-6	1.5764292119837604E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	599	1007	1348	166	10	9966.889689273441	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	18.0	17.0	8.450250706186672E-7	1.6055476341754677E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1835	2615	3492	20	13	13985.377175570315	13985.277311520995	3710	gi|16765258|ref|NP_460873.1| chemotaxis regulator [Salmonella typhimurium LT2]	14116.317808347168	2	129	M.ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM.	0	8.0	7.0	8.157099775585636E-6	1.6314199551171272E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	630	1039	1391	190	19	11527.344483351562	11527.254483351564	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KAREVKRVALADKYFAKRAELK(A)[545.24]IISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	28.0	19.0	9.325961056402313E-6	1.723981992961357E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1232	1720	2299	26	12	11206.310409343752	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	9.0	7.0	8.967075048156258E-6	1.7934150096312517E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1859	2654	3544	12	15	12291.5837535	12291.470907407229	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	1	121	.MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	7.0	6.0	9.227438133096243E-6	1.8454876266192487E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	215	612	822	67	11	6348.573759988281	6348.573759988281	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MA(K)[-19.05]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	10.0	9.0	3.475811124076884E-4	1.8461987970309517E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1387	1924	2571	52	19	15459.068504503908	15458.961076932374	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	0	15.0	10.0	1.8786722613098423E-5	1.8786722613098423E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1139	1612	2155	66	17	12762.04114680469	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	13.0	9.0	1.081279253468765E-5	2.16255850693753E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1783	2484	3318	16	9	8095.1817426601565	8095.15341015381	4302	gi|16765556|ref|NP_461171.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8226.193906979981	2	75	M.PQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNLINTSVAPAQRQAIANSFARALQSSISEDNAH.	0	7.0	5.0	2.362502848828717E-5	2.362502848828717E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	877	1298	1736	70	17	10059.491944515627	10059.456944515627	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	1	89	.MS(LSTEATAKIVSEFGRDANDTGSTDVQ)[-132.01]VALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	1	14.0	11.0	7.171492842229794E-5	2.3870652326962507E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	183	570	766	78	11	6348.578459695313	6348.598459695312	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.(MAK)[-19.02]GIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	11.0	10.0	4.93274816518873E-4	2.620446639647726E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	946	1369	1831	65	6	7264.683109546875	7264.683109546875	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQA(Q)[-1.88]NLQPMGTISVSQIGSTPMD(MRQEIVAKAEKAGANSYRIIELKEGD)[1.95]NWHATAELYK.	2	23.0	20.0	1.4851502227059617E-8	2.6646415951075235E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1401	1942	2595	80	24	14957.405224343755	14957.307417111815	6602	gi|16766710|ref|NP_462325.1| 50S ribosomal subunit protein L15 [Salmonella typhimurium LT2]	14957.307417111817	1	144	.MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE.	0	8.0	8.0	1.3333658568888992E-5	2.6667317137777984E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1715	2367	3162	61	15	11232.859931441406	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	8.0	8.0	1.3333965336545332E-5	2.6667930673090664E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	160	547	735	75	12	6266.609894984377	6266.604894984377	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[30.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	9.0	8.0	4.164046950244024E-4	2.6767069540683233E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	601	1009	1351	66	14	9966.895131171876	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	9.0	8.0	1.4143868253439129E-6	2.6873349681534344E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1292	1785	2386	74	15	11642.146338464843	11642.040060239258	8534	gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2]	13903.336981015625	23	128	A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR.	0	14.0	12.0	8.167750606248112E-7	2.695357700061877E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1580	2183	2916	34	21	18177.834724175784	18177.729724175784	838	gi|16763815|ref|NP_459430.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	19010.01853008789	8	169	M.PSFDIVSEVDLQEARNGVDNAVREVE(SRFDFRGVEATIELND)[1.09]ANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEAKLKQGIESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQPFQFKNFRD.	1	11.0	11.0	8.905322897552956E-7	3.001174879232541E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	631	1040	1392	186	17	11526.341579296877	11526.326579296876	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KAREVKRVALAD(KYFAKRAELK)[544.31]AIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	23.0	18.0	1.6930113106807258E-5	3.0868009382049835E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1152	1625	2172	29	8	8747.4886113125	8747.436094479981	3798	gi|16765304|ref|NP_460919.1| putative transcriptional regulator [Salmonella typhimurium LT2]	8747.436094479981	1	77	.MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK.	0	5.0	5.0	1.65639825625465E-5	3.3127965125093E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1592	2206	2947	34	14	11546.293103796874	11546.193456845704	6172	gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	11546.193456845704	1	99	.MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE.	0	8.0	7.0	1.176978488415279E-5	3.530935465245837E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1919	2808	3750	77	21	15024.870632859374	15024.768743710938	6346	gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella typhimurium LT2]	15155.80924053711	2	133	M.AKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED.	0	12.0	8.0	3.896555645709008E-5	3.896555645709008E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1382	1919	2564	37	16	11230.0562076875	11229.943952756348	2590	gi|16764690|ref|NP_460305.1| integration host factor alpha subunit [Salmonella typhimurium LT2]	11360.98444958252	2	99	M.ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE.	0	7.0	6.0	3.9337002387906245E-5	3.9337002387906245E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1229	1717	2295	129	15	11206.311469527343	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	19.0	12.0	2.0316665187226437E-5	4.0633330374452874E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1143	1616	2160	86	15	12762.049412183593	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	11.0	9.0	2.150245023456847E-5	4.300490046913694E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	514	921	1234	40	9	5288.947383707033	5288.937299924318	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	41	90	D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	7.0	6.0	3.924977273090184E-6	4.317475000399203E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	738	1154	1544	147	17	9518.347673929691	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	19.0	10.0	4.46917058261816E-5	4.46917058261816E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1390	1929	2578	23	17	15459.091174179692	15458.961076932372	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	2	137	M.SEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	0	6.0	6.0	4.5357763537281916E-5	4.5357763537281916E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	85	461	620	18	8	11136.831227562501	11136.831227562501	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	1	128	.(MKMT)[42.01](KLTTLLLTATLGLASGAALAAESNAQSSNGQANSAANAGQVAPD)[-2341.40]ARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	8.0	7.0	5.773637079388871E-6	4.53648027367189E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1683	2315	3092	131	22	17715.538548710945	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	18.0	12.0	4.642412522278905E-5	4.642412522278905E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	623	1032	1382	182	16	11526.337380687499	11526.3123806875	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	96	.(M)[42.01](KAREVKRVALADKYFAKRAELKAI)[371.25]ISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	23.0	18.0	3.3340942143939236E-5	4.728051108885992E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	328	728	976	20	10	7210.282188374999	7210.254739957275	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	5.0	4.0	4.978820893752963E-5	4.978820893752963E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1150	1623	2170	106	16	12762.051474562499	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	16.0	11.0	2.5112467087057555E-5	5.022493417411511E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1211	1697	2268	12	11	9782.884054187502	9782.813444333497	4144	gi|16765477|ref|NP_461092.1| putative periplasmic protein [Salmonella typhimurium LT2]	11884.955469327393	20	104	A.APATTGIDQYELKSFIADFTHFKPGDTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFYHR.	0	7.0	5.0	1.815822863865747E-6	5.084304018824091E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	806	1223	1636	56	8	6392.611871374999	6392.611871374999	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMV(KV)[14.04]EE.	1	12.0	11.0	3.464003769183873E-4	5.145975337989798E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1362	1893	2530	23	21	17503.464964093757	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	6.0	5.0	5.882962298854169E-5	5.882962298854169E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	142	529	711	37	4	3075.304739640625	3075.2924787573284	1850	gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2]	148381.19957180542	212	236	W.VDDEEYDDEYDEETDGVQRESRRAR.I	0	9.0	7.0	2.491794553380155E-8	5.892305045047879E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	347	747	1002	19	10	7210.262046773437	7210.254739957275	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	5.0	4.0	5.992002202457981E-5	5.992002202457981E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	937	1360	1819	10	8	7264.66050090625	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	6.0	5.0	1.7459606566329611E-6	6.110862298215364E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1706	2351	3140	50	15	11232.847114058593	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	12.0	8.0	3.0932526292821194E-5	6.186505258564239E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1411	1953	2610	18	10	9113.770637171878	9113.737188535157	4692	gi|16765751|ref|NP_461366.1| phosphohistidinoprotein-hexose phosphotransferase [Salmonella typhimurium LT2]	9113.737188535157	1	85	.MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE.	0	5.0	5.0	3.1835337892768164E-5	6.367067578553633E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	127	512	688	35	7	4078.237799207032	4078.2187406591793	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	21	57	D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	8.0	6.0	4.272255936420375E-6	6.408383904630562E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	13	385	519	88	8	5377.085671187499	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	8.0	8.0	3.28122512902859E-5	6.56245025805718E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1745	2414	3224	12	12	13493.19158840625	13493.076029019776	8572	gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2]	13624.116525845948	2	128	M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR.	0	4.0	4.0	6.627144939616353E-5	6.627144939616353E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	628	1037	1388	188	21	11527.335668656251	11527.31566865625	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KAREVKRVALAD(K)[545.30]YFAKRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	27.0	18.0	3.7414950078868915E-5	6.91646681917428E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	314	714	958	108	16	8517.6706916875	8517.6456916875	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAE(VRRR)[96.94]EFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	1	13.0	11.0	3.8219215983094926E-4	7.004278715607007E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1917	2805	3746	22	19	15861.200210812502	15861.200210812502	6346	gi|16766583|ref|NP_462198.1| ribosome-binding factor A [Salmonella typhimurium LT2]	15155.80924053711	2	133	M.AKEFGRPQRVAQEMQKEIAIILQREI(KD)[836.43]PRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED.	1	8.0	8.0	1.7290915697672014E-5	7.114305622063955E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	884	1305	1746	71	16	10060.481398249998	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	11.0	7.0	7.640392947828664E-5	7.640392947828664E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1496	2073	2770	40	7	8375.36170896875	8375.250936704102	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	9.0	9.0	1.6436720053704994E-6	8.218360026852497E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1344	1863	2490	81	20	13079.341128218752	13079.289797025147	6596	gi|16766707|ref|NP_462322.1| 30S ribosomal subunit protein S13 [Salmonella typhimurium LT2]	13210.330293851319	2	118	M.ARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVKISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKPIKK.	0	10.0	7.0	8.346239600184246E-5	8.346239600184246E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	875	1295	1732	61	15	10060.497707453123	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	10.0	7.0	8.604045366228846E-5	8.604045366228846E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1812	2582	3448	18	9	12217.493875578124	12217.493875578124	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAV(SAMSVMDVVELISAMEEKFGVSAAAA)[57.06]VAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	1	9.0	7.0	3.8022369245708045E-4	9.321052158283759E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1193	1673	2236	53	9	7272.039699515626	7272.039699515626	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELL(NLLREQFNLRMQA)[16.05]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	14.0	12.0	2.3873929726871495E-4	9.638405117639283E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	873	1293	1730	31	14	10060.482522515624	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	6.0	6.0	9.855287782388232E-5	9.855287782388232E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1360	1889	2524	105	23	17501.350314437506	17501.255314437505	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(AHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTAL)[42.01]T(VVGDGNGRVGFGYGKAREVPAAI)[-2.04]QKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	1	16.0	13.0	2.9503428216577594E-4	9.966946082916222E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1376	1908	2550	87	25	17503.37574046485	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	8.0	8.0	9.987635865238451E-5	9.987635865238451E-5	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1751	2425	3239	12	10	13493.156824000002	13493.076029019776	8572	gi|16767703|ref|NP_463318.1| putative translation initiation inhibitor [Salmonella typhimurium LT2]	13624.116525845948	2	128	M.SKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAEDVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR.	0	4.0	4.0	1.0290220431444585E-4	1.0290220431444585E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	665	1080	1446	54	18	8970.92253217969	8970.880617337647	7206	gi|16767013|ref|NP_462628.1| 50S ribosomal subunit protein L28 [Salmonella typhimurium LT2]	9101.921114163819	2	78	M.SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY.	0	7.0	6.0	1.0839437219062616E-4	1.0839437219062616E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1805	2554	3411	20	14	15998.610811390627	15998.482710080565	802	gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2]	15998.482710080567	1	156	.MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA.	0	8.0	5.0	6.0131585915914E-5	1.20263171831828E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	816	1233	1650	40	11	8339.088770519535	8339.088770519535	8154	gi|16767490|ref|NP_463105.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8454.089437680665	2	70	M.(MNKDEAGGNWKQFKGKMKEQWGKLTDDDMTV)[16.04]IEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRNNYRW.	1	7.0	7.0	3.77509798813693E-4	1.2385949961077726E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1308	1807	2415	104	16	10613.600743875	10613.600743875	1892	gi|16764342|ref|NP_459957.1| integration host factor beta subunit [Salmonella typhimurium LT2]	10614.512960629883	1	94	.(M)[-.91]TKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG.	1	12.0	12.0	7.298448687569781E-4	1.2652612575966105E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1102	1557	2082	69	10	9229.073934898439	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	8.0	8.0	6.453514523264109E-5	1.2907029046528218E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1833	2609	3484	14	12	12863.55467465625	12863.466947751465	5722	gi|16766271|ref|NP_461886.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12863.466947751465	1	109	.MTTHDRVRQQLHTLETLLREHRHWRQDAPQAHLFTSTQPFFMDTMEPLEWLQWVLIPRMHTLLDNAQPLPEAFAVAPYYEMALAADHPQRETILAVLQDLDALFARDKS.	0	5.0	4.0	6.624854862771956E-5	1.324970972554391E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1738	2396	3200	32	15	11782.254011515624	11782.113416867676	7558	gi|16767191|ref|NP_462806.1| thioredoxin 1 [Salmonella typhimurium LT2]	11913.153913693848	2	109	M.SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA.	0	6.0	6.0	1.3683593515798317E-4	1.3683593515798317E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	325	725	972	59	11	8518.706156160159	8518.706156160159	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	1	71	.(MPV)[-33.04]IKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENARRTRLY.	1	10.0	9.0	0.0010659062408090562	1.369863796555977E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	822	1240	1659	30	12	10657.609093921878	10657.609093921878	3628	gi|16765217|ref|NP_460832.1| putative copper resistance protein [Salmonella typhimurium LT2]	13312.989523129883	27	124	A.HAHLTHQYPAANAAV(TASPQALTLNF)[-.94]SEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK.	1	12.0	11.0	5.818327097980221E-6	1.3830064497967983E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	553	960	1286	52	5	4274.242445511721	4274.226270871578	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	313	350	G.NTCDNVKPRAALIDCLAPDRRVEIEVKGVKDVVTQPQA.	0	10.0	9.0	3.779810271380541E-6	1.474126005838411E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1428	1973	2636	42	12	16293.836838031251	16293.836838031251	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	24	171	A.(ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPL)[-.85]GVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	1	12.0	11.0	4.8437888023048725E-6	1.569859406031889E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	216	613	823	27	10	4930.724773640625	4930.70897503418	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	48	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAG.T	0	11.0	8.0	3.71901009365883E-6	1.5991743402732968E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1803	2551	3407	24	14	15997.643526234377	15997.538526234377	802	gi|16763797|ref|NP_459412.1| riboflavin synthase beta chain [Salmonella typhimurium LT2]	15998.482710080567	1	156	.MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDS(GV)[-.94]PVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA.	1	11.0	9.0	5.102680298693586E-4	1.6402177100885708E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	797	1214	1624	28	9	8138.216837875	8138.216837875	162	gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2]	10296.443510251465	22	96	A.AEQVSKQEISHFKLVKVGTINVSQSGGQI(SSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEA)[-.96]VAEVYNDATK.	1	13.0	12.0	8.90327814619501E-6	1.7762155395321938E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	123	508	683	91	10	6326.401408523438	6326.401408523438	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	1	57	.MA(VQQNKPT)[-116.03]RSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	11.0	9.0	0.0017107265907892846	1.8690486313674862E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2005	3165	4226	154	20	13357.686141781249	13357.631246762698	2584	gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2]	13488.671743588868	2	118	M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA.	0	12.0	10.0	1.8756438432418368E-4	1.8756438432418368E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	983	1413	1890	143	18	14441.764311960938	14441.664311960938	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHE(IIKTTLPKAKELRRVVE)[-1.03]PLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	1	18.0	15.0	6.668820710274058E-4	1.9414091664497188E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	703	1118	1496	101	5	6377.577309890625	6377.577309890625	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKV(EE)[-1.00].	1	13.0	11.0	0.0038449751203608077	2.0275515975056992E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	358	760	1019	133	13	9044.935769855469	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	13.0	11.0	2.07012709856605E-4	2.07012709856605E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	711	1126	1507	19	7	6509.6371661875	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	6.0	5.0	1.0361470901107689E-4	2.0722941802215377E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1186	1666	2227	30	8	7272.03159465625	7272.021594656249	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEEL(NTELLNLLREQFNLRMQAASGQLQQS)[16.03]HLLKQVRRDVARVKTLLTEKAGA.	1	10.0	10.0	5.380734203668002E-4	2.162258004066586E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	605	1013	1356	23	12	8842.415541000002	8842.415541000002	3420	gi|16765111|ref|NP_460726.1| cation transport regulator [Salmonella typhimurium LT2]	8943.40267010254	2	76	M.PYKAKSDLPDNVRNVLPAHAQDIYKEAFNSAWEQYKDKADRRD(DASREETAHKVAWAAVKNDYEKGED)[30.05]DKWHKKK.	1	8.0	8.0	9.321220430443351E-4	2.2216891915781292E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1717	2369	3164	54	13	11232.848360394531	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	8.0	7.0	1.140479442148103E-4	2.280958884296206E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1700	2345	3132	23	12	11232.843124187502	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	8.0	5.0	1.1833329894839442E-4	2.3666659789678884E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1147	1620	2166	109	19	12762.04801814453	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	12.0	9.0	1.2098166697263657E-4	2.4196333394527314E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	951	1374	1838	54	18	13673.581110945313	13673.504202084961	6620	gi|16766719|ref|NP_462334.1| 50S ribosomal subunit protein L14 [Salmonella typhimurium LT2]	13673.504202084961	1	123	.MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGPVTRELRNEKFMKIISLAPEVL.	0	6.0	6.0	1.2229068075765787E-4	2.4458136151531574E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1952	3077	4108	17	7	7267.635672414062	7267.58753033203	7050	gi|16766935|ref|NP_462550.1| major cold shock protein [Salmonella typhimurium LT2]	7398.628027158203	2	70	M.SGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL.	0	7.0	5.0	2.552305854018773E-4	2.552305854018773E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1481	2050	2739	39	13	9387.878932160158	9387.79499645752	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	5.0	5.0	1.34265121100048E-4	2.68530242200096E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1609	2231	2980	25	12	9950.276879671877	9950.207769589844	4760	gi|16765785|ref|NP_461400.1| putative detox protein [Salmonella typhimurium LT2]	9950.207769589844	1	96	.MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI.	0	8.0	6.0	1.3984731502116014E-4	2.7969463004232027E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	186	575	772	19	12	6348.575212015628	6348.575212015628	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	1	55	.MAKGIREKIKLVSS(A)[-19.04]GTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	6.0	5.0	0.005414623412666587	2.8761525111547874E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1130	1603	2143	15	11	8741.656184402347	8741.605169492186	3630	gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2]	8741.605169492188	1	76	.MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK.	0	5.0	5.0	1.518264038576082E-4	3.036528077152164E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1666	2294	3064	134	30	21894.017219109373	21894.017219109373	6236	gi|16766528|ref|NP_462143.1| putative inner membrane protein [Salmonella typhimurium LT2]	11078.90770550293	2	101	M.SKDNTTEHLRAELKSLTDTLE(E)[10946.15]VLSSSGEKSKEELSKIRSKAERALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR.	1	21.0	18.0	4.022456858420491E-6	3.0391785418387604E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1674	2304	3078	67	23	17715.565818609382	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	10.0	7.0	3.1371337409762595E-4	3.1371337409762595E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	734	1150	1539	27	15	9518.330731789065	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	4.0	4.0	3.1635219900135884E-4	3.1635219900135884E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2	374	504	89	12	5377.09318828125	5377.076475339355	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	10.0	7.0	1.687158948772887E-4	3.374317897545774E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	764	1180	1579	60	20	10278.701361546873	10278.658636289063	6632	gi|16766725|ref|NP_462340.1| 30S ribosomal subunit protein S19 [Salmonella typhimurium LT2]	10409.699133115235	2	92	M.PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK.	0	6.0	5.0	3.50594743054282E-4	3.50594743054282E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1691	2328	3110	27	20	18104.787998062508	18104.706731992188	4696	gi|16765753|ref|NP_461368.1| glucose-specific IIA component [Salmonella typhimurium LT2]	18235.74722881836	2	169	M.GLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAEKIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVGETPVIRIKK.	0	4.0	4.0	3.623600476459982E-4	3.623600476459982E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	331	731	980	29	13	7210.284957542971	7210.254739957276	2582	gi|16764686|ref|NP_460301.1| 50S ribosomal subunit protein L35 [Salmonella typhimurium LT2]	7341.295236783447	2	65	M.PKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHLRPKAMVSKGDLGLVIACLPYA.	0	7.0	4.0	3.7440611034394593E-4	3.7440611034394593E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1608	2230	2979	17	11	9950.272803132815	9950.207769589844	4760	gi|16765785|ref|NP_461400.1| putative detox protein [Salmonella typhimurium LT2]	9950.207769589844	1	96	.MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAMVRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI.	0	7.0	5.0	2.091721166594395E-4	4.18344233318879E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1474	2031	2714	10	14	16294.793477437503	16294.684805112305	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	24	171	A.ATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	0	4.0	4.0	2.0017275758083484E-5	4.2036279091975316E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1658	2285	3052	121	14	12106.039173617188	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	14.0	12.0	2.1551581412891253E-4	4.3103162825782506E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	384	790	1059	31	6	3042.7958519101567	3042.7908519101566	6592	gi|16766705|ref|NP_462320.1| 30S ribosomal subunit protein S4 [Salmonella typhimurium LT2]	23527.645174222413	2	28	M.ARYLGPKLKLSRREGTDLFLKSGVR(AI)[-.99].D	1	12.0	11.0	1.821849387939018E-5	4.4573509432714706E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	74	447	602	21	10	6408.35758828125	6408.35758828125	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTAVT(SL)[96.97]SVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	9.0	6.0	0.006473431363601976	4.647418417936415E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	324	724	971	49	11	8518.706156160159	8518.73615616016	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKASAVKRHAKKLARENAR(RTR)[98.03]LY.	1	8.0	8.0	0.0026447754213698806	4.8469712721620054E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1011	1441	1927	48	9	8113.319621078125	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	8.0	7.0	2.539169757800878E-4	5.078339515601756E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	719	1134	1518	52	11	6509.643340507812	6509.658340507812	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMV(N)[131.08]AVSFMVKVEE.	1	10.0	8.0	0.005831002893957573	5.221339231503583E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1842	2629	3511	20	16	12160.54133325	12160.430410581055	7986	gi|16767406|ref|NP_463021.1| 50S ribosomal subunit protein L7/L12 [Salmonella typhimurium LT2]	12291.470907407227	2	121	M.SITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAGPAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEVK.	0	9.0	4.0	5.23694244641224E-4	5.23694244641224E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	0	372	502	89	10	5377.086988328124	5377.076475339356	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	10.0	7.0	2.8712082497900127E-4	5.742416499580025E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1185	1665	2226	27	9	7272.036403617189	7272.036403617189	6624	gi|16766721|ref|NP_462336.1| 50S ribosomal subunit protein L29 [Salmonella typhimurium LT2]	7255.987646298828	1	63	.MKAKELREKSVEELNTELL(NLLREQFNLRMQA)[16.05]ASGQLQQSHLLKQVRRDVARVKTLLTEKAGA.	1	9.0	9.0	0.00147264989685937	5.934355201828845E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	162	549	738	89	10	6266.608944054689	6266.608944054689	7204	gi|16767012|ref|NP_462627.1| 50S ribosomal subunit protein L33 [Salmonella typhimurium LT2]	6367.619703488769	2	55	M.(A)[30.03]KGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK.	1	9.0	9.0	0.009169316560082965	6.006284691365945E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2001	3160	4219	65	22	13357.685627867186	13357.631246762696	2584	gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2]	13488.671743588868	2	118	M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA.	0	7.0	6.0	6.18602260755753E-4	6.18602260755753E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1454	2010	2686	38	20	15478.140755312497	15477.992399411622	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	8.0	7.0	2.3114388516833683E-4	6.934316555050105E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1222	1710	2286	38	14	11206.319783125	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	8.0	5.0	3.5751569450349343E-4	7.150313890069869E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	558	965	1292	19	7	5311.911622738281	5311.890394406739	870	gi|16763832|ref|NP_459447.1| DNA-binding protein HU-beta [Salmonella typhimurium LT2]	9234.010030942383	40	90	G.DDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN.	0	5.0	5.0	3.025902275191743E-5	7.262165460460183E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	811	1228	1643	37	16	9518.372650125	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	4.0	4.0	7.285179630878052E-4	7.285179630878052E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1451	2005	2679	40	19	15478.092855531248	15477.992399411623	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	8.0	7.0	2.4639314667308234E-4	7.39179440019247E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1593	2207	2948	70	17	11546.292516031252	11546.193456845704	6172	gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	11546.193456845704	1	99	.MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE.	0	8.0	7.0	2.5205730636800814E-4	7.561719191040244E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	78	452	608	26	12	6408.355487453127	6408.355487453127	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	2	57	M.AVQQNKPTRSKRGMRRSHDALTA(VT)[96.96]SLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	1	7.0	6.0	0.010960791779262513	7.868992923370817E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1461	2017	2695	38	21	15478.148310855468	15477.992399411622	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	8.0	7.0	2.6277933872853387E-4	7.883380161856017E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1052	1489	1991	22	15	11759.497684859374	11759.412664609374	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	4.0	4.0	2.001479911450914E-4	8.005919645803656E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1219	1707	2282	33	16	11206.336481125	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	8.0	5.0	4.2110174002478744E-4	8.422034800495749E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1171	1650	2206	26	13	12512.560944019531	12512.555944019532	5146	gi|16765980|ref|NP_461595.1| ribosome stabilization factor [Salmonella typhimurium LT2]	12644.54841442627	2	112	M.TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHI(ILSKEPQGF)[-.95]IADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVKDASFVEAEEE.	1	8.0	8.0	0.003760411122335786	9.489597381399191E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1464	2020	2699	13	19	15163.532987007815	15163.423299985354	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE.	0	5.0	4.0	4.895637466835285E-4	9.79127493367057E-4	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	717	1132	1515	38	7	6509.6448566171875	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	6.0	6.0	5.135760752779973E-4	0.0010271521505559947	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	722	1137	1522	76	7	6509.6363116953125	6509.614042478027	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	1	59	.MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	0	9.0	8.0	5.356597296570267E-4	0.0010713194593140534	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	516	923	1236	44	8	5288.95044828125	5288.937299924317	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	41	90	D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	6.0	5.0	9.781087342444483E-5	0.0010759196076688931	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1701	2346	3134	15	12	11232.873885906252	11232.765684323731	6542	gi|16766680|ref|NP_462295.1| factor-for-inversion stimulation protein [Salmonella typhimurium LT2]	11232.765684323731	1	98	.MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN.	0	6.0	4.0	5.394450105386233E-4	0.0010788900210772466	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1614	2237	2988	18	11	8823.825841136722	8823.72296734375	516	gi|16763651|ref|NP_459266.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	18960.890054898682	90	164	H.KWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSRITFF.	0	5.0	5.0	5.703641025715638E-5	0.0010836917948859712	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1442	1995	2666	14	15	15163.566302433594	15163.423299985352	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEE.	0	6.0	4.0	5.52990634506679E-4	0.001105981269013358	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1480	2049	2738	47	13	9387.878932160158	9387.79499645752	3320	gi|16765059|ref|NP_460674.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9387.79499645752	1	83	.MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD.	0	7.0	5.0	5.951410002224217E-4	0.0011902820004448434	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2014	3176	4240	46	23	13357.656379210937	13357.631246762696	2584	gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2]	13488.671743588868	2	118	M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA.	0	4.0	4.0	0.0011967184129554696	0.0011967184129554696	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	493	900	1206	53	8	5389.987038374999	5389.955358701172	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	63	110	D.GADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	7.0	7.0	6.135602072438441E-5	0.001227120414487688	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	984	1414	1891	72	22	14442.761086867185	14442.68937130493	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	8.0	7.0	6.173110383434848E-4	0.0012346220766869696	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1231	1719	2298	136	16	11206.318903	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	14.0	9.0	6.524597719669865E-4	0.001304919543933973	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	810	1227	1642	70	17	9518.363237894535	9518.289663510743	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	87	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA.	0	6.0	5.0	0.001470523037306802	0.001470523037306802	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1429	1975	2639	34	18	15590.127576351564	15590.001573758545	3388	gi|16765095|ref|NP_460710.1| DNA-binding protein HLP-II [Salmonella typhimurium LT2]	15590.001573758545	1	137	.MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE.	0	9.0	6.0	7.423145647716214E-4	0.0014846291295432428	0.0
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	53	426	574	80	10	5377.081495164061	5377.076475339356	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	6.0	6.0	7.583922075772713E-4	0.0015167844151545427	7.898894154818325E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1110	1570	2099	23	13	10089.119131011717	10089.058084683838	1668	gi|16764234|ref|NP_459849.1| glutaredoxin 1 [Salmonella typhimurium LT2]	10089.058084683838	1	87	.MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGITKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA.	0	4.0	4.0	7.632079706360459E-4	0.0015264159412720919	7.892659826361484E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	777	1194	1598	115	9	12994.463910828124	12994.463910828124	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	1	112	.MAESFTTTNRYFDNKHYPRGFSRHGDF(TIKEAQLLER)[-131.99]HGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	1	15.0	14.0	0.0021842577336493663	0.0015383321500985715	7.886435331230284E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1448	2001	2674	17	17	15292.586892683597	15292.496892683597	8448	gi|16767637|ref|NP_463252.1| 30S ribosomal subunit protein S6 [Salmonella typhimurium LT2]	15163.423299985352	1	131	.MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPMVKAKD(ERRERRDDFANETADDAEAGDSEE)[129.07].	1	10.0	7.0	0.0026115688076557256	0.0015599189223120483	7.880220646178094E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	807	1224	1638	59	9	6392.61777896875	6392.61777896875	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.(AK)[14.04]TIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVSFMVKVEE.	1	9.0	9.0	0.01039693910203166	0.0015760174109648356	7.874015748031496E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	780	1197	1602	71	8	8720.2776928125	8720.2776928125	7294	gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2]	11089.657293515625	22	97	A.DSPFSSLQSAHEKNTIL(KD)[-116.02]LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPEM.	1	17.0	14.0	3.300493425835193E-5	0.0016567499041802232	7.867820613690008E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1014	1444	1931	56	13	8113.326161609377	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	9.0	7.0	8.32403233994702E-4	0.001664806467989404	7.861635220125787E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1086	1538	2056	35	9	7446.834067933595	7446.7773954443355	1216	gi|16764006|ref|NP_459621.1| negative regulator [Salmonella typhimurium LT2]	7446.7773954443355	1	69	.MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPSAANVTAL.	0	7.0	5.0	9.295833396720988E-4	0.0018591666793441976	7.855459544383347E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	975	1402	1875	31	10	6851.681786507814	6851.6541196875	5446	gi|16766132|ref|NP_461747.1| carbon storage regulator [Salmonella typhimurium LT2]	6851.6541196875	1	61	.MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQQSSY.	0	4.0	4.0	0.0010054314070067664	0.0020108628140135328	7.849293563579278E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1588	2202	2942	34	15	11546.336425941407	11546.193456845704	6172	gi|39546361|ref|NP_462111.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	11546.193456845704	1	99	.MIDPKKIEQIARQVHESMPKGIREFGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKPEEVKPAPAIPPVDPQQE.	0	7.0	5.0	6.830072732663749E-4	0.0020490218197991247	7.84313725490196E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1118	1585	2119	76	11	9229.066048546876	9229.012678342286	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	1	82	.MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA.	0	7.0	7.0	0.0010282995477659447	0.0020565990955318894	7.836990595611285E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	495	902	1208	56	8	5389.987038374999	5389.955358701172	6630	gi|16766724|ref|NP_462339.1| 50S ribosomal subunit protein L22 [Salmonella typhimurium LT2]	12218.769315915528	63	110	D.GADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSDR.	0	8.0	7.0	1.0705589349598828E-4	0.0021411178699197657	7.830853563038371E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	128	513	690	26	8	11047.855133937499	11047.855133937499	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVA(PNDVNNND)[-17.01]INTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	10.0	9.0	8.34681089059762E-5	0.0021506937811632916	7.82472613458529E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1615	2238	2990	10	11	12122.052212554689	12122.028196530764	2012	gi|16764400|ref|NP_460015.1| probable minor tail protein [Phage Gifsy-2]	12481.154554562989	4	109	N.ELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSFSDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGVRFEPESR.	0	5.0	4.0	6.845629795065662E-5	0.002259057832371668	7.818608287724785E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	130	515	692	18	8	4078.2316828750004	4078.2187406591793	2302	gi|16764546|ref|NP_460161.1| 50S ribosomal subunit protein L32 [Salmonella typhimurium LT2]	6442.431486325683	21	57	D.ALTAVTSLSVDKTSGEKHLRHHITADGYYRGRKVIAK.	0	4.0	4.0	1.4127390186108687E-4	0.00226038242977739	7.8125E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	575	982	1315	26	5	3148.454066851563	3148.442693906247	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	49	A.APKDNTWYAGAKLGWSQYHDTGFIHNDG.P	0	9.0	7.0	9.619409063300248E-7	0.0022694195621913308	7.8064012490242E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1768	2469	3298	28	21	18697.94860184766	18697.77667446655	3348	gi|16765073|ref|NP_460688.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	18697.776674466553	1	167	.MNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAFQSHLEETQGQIERIDQIVESESGIKLKRMKCVAMEGLIEEANEVIESTEKNEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNKSAERKSK.	0	4.0	4.0	0.0014015393110043425	0.002803078622008685	7.8003120124805E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1339	1853	2476	13	19	14919.142309937504	14919.092516141354	3274	gi|16765036|ref|NP_460651.1| peptide transport protein [Salmonella typhimurium LT2]	36144.478410916745	2	133	M.IIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLF.F	0	4.0	4.0	3.794798286583092E-5	0.002808150732071488	7.79423226812159E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1453	2007	2682	18	18	15478.107699890626	15477.99239941162	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	7.0	5.0	9.368521666905231E-4	0.0028105565000715693	7.78816199376947E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	546	953	1276	53	12	6393.597904093749	6393.597904093749	6604	gi|16766711|ref|NP_462326.1| 50S ribosomal subunit protein L30 [Salmonella typhimurium LT2]	6509.614042478027	2	59	M.AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAVRGMVNAVS(FM)[15.02]VKVEE.	1	11.0	8.0	0.017354436313854027	0.0029100426745791814	7.782101167315176E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1134	1607	2148	16	11	8741.645442214847	8741.605169492186	3630	gi|16765218|ref|NP_460833.1| DNA polymerase III theta subunit [Salmonella typhimurium LT2]	8741.605169492188	1	76	.MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK.	0	4.0	4.0	0.0017986213540226955	0.003597242708045391	7.776049766718507E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	766	1182	1582	175	15	12995.466702582033	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	14.0	9.0	0.0036094737362537444	0.0036094737362537444	7.77000777000777E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1054	1493	1996	38	11	11759.492731242188	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	5.0	5.0	9.135197448786991E-4	0.0036540789795147964	7.763975155279503E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1233	1721	2300	59	18	11206.316191820315	11206.238477902833	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	5.0	4.0	0.0019390272545973298	0.0038780545091946597	7.757951900698216E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	54	427	575	79	10	5377.081495164061	5377.076475339356	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	5.0	5.0	0.0020198199883456145	0.004039639976691229	7.751937984496124E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	988	1418	1896	75	24	14442.799879593753	14442.68937130493	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	7.0	6.0	0.0022855954510073765	0.004571190902014753	7.74593338497289E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	204	601	807	21	4	2932.531299140625	2932.522665219727	5104	gi|16765959|ref|NP_461574.1| anti sigma-E factor [Salmonella typhimurium LT2]	24264.167574124756	149	175	V.SLGVPSEAAPVGSQQQQVQEQRRRINA.M	0	10.0	8.0	2.1829341211124757E-6	0.004814703119146697	7.739938080495357E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1611	2234	2984	20	12	12122.01039065625	12122.028196530762	2012	gi|16764400|ref|NP_460015.1| probable minor tail protein [Phage Gifsy-2]	12481.154554562989	4	109	N.ELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSFSDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGVRFEPESR.	0	6.0	5.0	1.4460243784784101E-4	0.004916482886826595	7.733952049497294E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	885	1306	1747	113	18	10060.491992734374	10060.428564267579	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR.	0	9.0	7.0	0.004992111826593719	0.004992111826593719	7.727975270479134E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1298	1793	2396	41	17	11642.103222011721	11642.040060239258	8534	gi|16767685|ref|NP_463300.1| cytochrome b562 [Salmonella typhimurium LT2]	13903.336981015625	23	128	A.ADLEDNMDILNDNLKVVEKTDSAPELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLANEGNVKEAKAAAEALKTTRNTYHKKYR.	0	8.0	6.0	1.2187549259817362E-4	0.0049968951965251186	7.722007722007722E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1329	1830	2446	29	9	12434.101377523437	12434.01762218994	2174	gi|16764480|ref|NP_460095.1| putative periplasmic protein [Salmonella typhimurium LT2]	14522.176363187256	20	131	A.DECASASTQLEMNRCAAAQYQAADKKLNETYQSALKRAQPPQRELLQKAQVAWIALRDADCALIRSGTEGGSVQPMIASQCLTDKTNEREAFLASLLQCEEGDLSCPLPPAG.	0	6.0	6.0	1.9899819201616367E-4	0.005372951184436419	7.716049382716049E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	312	712	955	72	14	8518.732973179689	8518.732973179689	6198	gi|16766509|ref|NP_462124.1| 30S ribosomal subunit protein S21 [Salmonella typhimurium LT2]	8551.747667508545	2	71	M.PVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTERKRAKA(SAVKRHAKKLARENARRTR)[98.03]LY.	1	7.0	7.0	0.031263066076682874	0.005729453696862389	7.710100231303007E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1966	3110	4152	21	11	11759.508844523438	11759.412664609375	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	103	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISLG.	0	4.0	4.0	0.0014524873077130657	0.005809949230852263	7.704160246533128E-4
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1956	3083	4116	16	14	16293.776631734378	16293.776631734378	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	1	171	.(MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKMSGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAY)[42.01](RLNDWASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGA)[-2288.15]GLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	1	7.0	7.0	5.613660260496392E-4	0.006599659640019162	0.001539645881447267
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1225	1713	2290	66	17	11206.32371196094	11206.238477902834	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE.	0	5.0	5.0	0.0034498662159418774	0.006899732431883755	0.0015384615384615385
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	220	617	828	56	9	4930.729425128908	4930.70897503418	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	48	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAG.T	0	8.0	6.0	1.6514630032968348E-4	0.006936144613846706	0.0015372790161414297
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	770	1187	1588	140	14	12995.484903875	12995.41010494751	7524	gi|16767174|ref|NP_462789.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13126.450601773682	2	112	M.AESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFNDLDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVEGAEDYTEADD.	0	13.0	9.0	0.006964895352911207	0.006964895352911207	0.0015360983102918587
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	600	1008	1350	63	15	9966.89054071875	9966.838422971192	2906	gi|16764848|ref|NP_460463.1| putative periplasmic protein [Salmonella typhimurium LT2]	13009.40887661499	29	113	A.ETSKLVIESGDSAQSRQEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRCLDRRTGRVITP.	0	7.0	6.0	3.669356980223948E-4	0.006971778262425501	0.0015349194167306216
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	568	975	1306	24	5	4095.9032301132816	4095.888776975095	2072	gi|16764429|ref|NP_460044.1| putative hydrogenase membrane component precurosr [Salmonella typhimurium LT2]	37605.86566753906	22	58	A.APKDNTWYAGAKLGWSQYHDTGFIHNDGPTHENQLGA.G	0	8.0	6.0	2.508910326283785E-6	0.007383036996122705	0.0015337423312883436
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1115	1575	2106	17	10	10089.118070828124	10089.05808468384	1668	gi|16764234|ref|NP_459849.1| glutaredoxin 1 [Salmonella typhimurium LT2]	10089.058084683838	1	87	.MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGITKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA.	0	4.0	4.0	0.003818910099041827	0.007637820198083654	0.0015325670498084292
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1501	2078	2776	25	7	8375.3036035	8375.250936704102	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	5.0	5.0	1.5349497572068207E-4	0.007674748786034104	0.0015313935681470138
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1500	2077	2775	17	9	8375.309986558594	8375.2509367041	2828	gi|39546317|ref|NP_460424.2| putative cytoplasmic protein [Salmonella typhimurium LT2]	9025.52433605713	6	76	Y.MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQVPQSVWRYVQ.	0	7.0	5.0	1.5827280888912248E-4	0.00823018606223437	0.001530221882172915
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1367	1899	2538	109	22	17503.418015242194	17503.297346311036	6606	gi|16766712|ref|NP_462327.1| 30S ribosomal subunit protein S5 [Salmonella typhimurium LT2]	17592.32727642578	2	167	M.(A)[42.01]HIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK.	0	9.0	6.0	0.009921032191688446	0.009921032191688446	0.0015290519877675841
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	796	1213	1623	37	11	8139.228408921875	8139.172796445313	162	gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2]	10296.443510251465	22	96	A.AEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK.	0	5.0	5.0	2.5205058511697557E-4	0.010334073989795998	0.0015278838808250573
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2004	3163	4223	76	24	13357.72051434375	13357.631246762696	2584	gi|16764687|ref|NP_460302.1| 50S ribosomal subunit protein L20 [Salmonella typhimurium LT2]	13488.671743588868	2	118	M.ARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFDKVAFTALVEKAKAALA.	0	4.0	4.0	0.010892607832563482	0.010892607832563482	0.0015267175572519084
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1989	3147	4202	64	15	9044.949171957032	9044.898699002684	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	4.0	4.0	0.01207361725266969	0.01207361725266969	0.0015255530129672007
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	122	507	682	29	8	11048.841462062499	11048.841462062499	1452	gi|16764124|ref|NP_459739.1| hypothetical protein STM0759 [Salmonella typhimurium LT2]	13436.224081235352	25	128	A.AESNAQSSNGQANSAANAGQVAPDARQNVA(PNDVNNNDI)[-16.02]NTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRCPDINKKVETGNGVNNDVNTKTDGTTQ.	1	10.0	8.0	5.451082774773354E-4	0.014042602200979588	0.001524390243902439
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	387	793	1063	136	14	9044.93856465625	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	10.0	8.0	0.014491955204515513	0.014491955204515513	0.0015232292460015233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	515	922	1235	53	8	5288.95044828125	5288.937299924317	8022	gi|16767424|ref|NP_463039.1| DNA-binding protein HU-alpha [Salmonella typhimurium LT2]	9515.17277355713	41	90	D.AVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK.	0	7.0	4.0	0.001332816149205058	0.014660977641255638	0.0015220700152207
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	3	375	506	89	10	5377.083936570311	5377.076475339356	7424	gi|16767124|ref|NP_462739.1| 50S ribosomal subunit protein L34 [Salmonella typhimurium LT2]	5377.076475339355	1	46	.MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK.	0	8.0	5.0	0.007659520212914737	0.015319040425829473	0.001520912547528517
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	943	1366	1827	42	9	7264.632717093751	7264.61311932129	6494	gi|16766657|ref|NP_462272.1| putative periplasmic protein [Salmonella typhimurium LT2]	9528.873335080567	23	88	A.AVHQVNAEQAQNLQPMGTISVSQIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK.	0	5.0	4.0	4.878927719227092E-4	0.016100461473449405	0.001519756838905775
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	952	1376	1840	39	20	13672.566436875	13672.651796536868	1620	gi|16764209|ref|NP_459824.1| putative asparaginase [Salmonella typhimurium LT2]	32737.213960843506	181	313	V.GAVARDKFGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVVMEKLPALGGSGGLIAVDHEGNVALPFNSEGMYRAWGYAGDTPTTGIYRE.	0	4.0	4.0	6.92539825262189E-4	0.018698575282079105	0.0015186028853454822
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1680	2311	3087	51	25	17715.50793164844	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	4.0	4.0	0.0187212847854164	0.0187212847854164	0.0015174506828528073
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1679	2310	3086	53	23	17715.577049078132	17715.418695645752	7984	gi|16767405|ref|NP_463020.1| 50S ribosomal subunit protein L10 [Salmonella typhimurium LT2]	17846.459192471924	2	165	M.ALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRDAKEAA.	0	5.0	4.0	0.020136710578418766	0.020136710578418766	0.001516300227445034
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	203	600	806	17	4	2932.531299140625	2932.522665219727	5104	gi|16765959|ref|NP_461574.1| anti sigma-E factor [Salmonella typhimurium LT2]	24264.167574124756	149	175	V.SLGVPSEAAPVGSQQQQVQEQRRRINA.M	0	9.0	7.0	9.498445784422793E-6	0.02094987480520025	0.0015151515151515152
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1657	2284	3051	46	12	12106.044326203126	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	6.0	5.0	0.010497628554962845	0.02099525710992569	0.001514004542013626
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	370	772	1035	66	16	9044.941102499999	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	5.0	4.0	0.021617661716355305	0.021617661716355305	0.0015128593040847202
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1617	2243	2996	15	13	10629.682560433594	10629.612560433594	5306	gi|16766060|ref|NP_461675.1| putative transcriptional regulator [Salmonella typhimurium LT2]	13352.732820706788	23	118	I.(VIGKRLKISRVRADLTQAELG)[32.00]ALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI.	1	6.0	6.0	0.0010044663479984322	0.024229774400422198	0.0015117157974300832
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	997	1427	1908	69	13	14442.77066266406	14442.689371304934	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	6.0	5.0	0.012548732866929752	0.025097465733859504	0.0015105740181268882
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	843	1261	1687	66	15	10076.488316039062	10076.478316039062	6342	gi|16766581|ref|NP_462196.1| 30S ribosomal subunit protein S15 [Salmonella typhimurium LT2]	10191.46906109375	2	89	M.SLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKD(HHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR)[16.05].	1	12.0	8.0	0.07985729077021567	0.025210286779826674	0.0015094339622641509
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	374	776	1040	56	18	9044.922033898438	9044.898699002686	6376	gi|16766598|ref|NP_462213.1| 50S ribosomal subunit protein L27 [Salmonella typhimurium LT2]	9175.939195828858	2	85	M.AHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTKFHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE.	0	6.0	4.0	0.02686936290498545	0.02686936290498545	0.0015082956259426848
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	266	666	894	47	6	2823.5071065859374	2823.4999830297857	354	gi|16763570|ref|NP_459185.1| aspartate 1-decarboxylase [Salmonella typhimurium LT2]	13992.038381772461	1	24	.MIRTMLQGKLHRVKVTQADLHYEG.S	0	6.0	5.0	3.263676692204342E-4	0.027088516545296037	0.0015071590052750565
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	957	1382	1848	72	21	13673.567705796873	13673.504202084963	6620	gi|16766719|ref|NP_462334.1| 50S ribosomal subunit protein L14 [Salmonella typhimurium LT2]	13673.504202084961	1	123	.MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGPVTRELRNEKFMKIISLAPEVL.	0	4.0	4.0	0.013811439666473366	0.027622879332946732	0.0015060240963855422
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1455	2011	2687	75	16	15478.147398374998	15477.992399411622	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	7.0	7.0	0.010933015415404678	0.032799046246214034	0.002257336343115124
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	542	949	1271	72	12	6393.595706828124	6393.587953763428	7666	gi|16767245|ref|NP_462860.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2]	29281.496580319825	2	57	M.(A)[42.01]VEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHLVAAPLIKQMPQGA.T	0	8.0	5.0	0.0013061214776887782	0.033959158419908236	0.0030075187969924814
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1830	2606	3480	21	7	8158.94281165625	8158.94281165625	1592	gi|16764195|ref|NP_459810.1| outer membrane protease precursor [Salmonella typhimurium LT2]	18539.917421536866	99	171	D.(WASIYGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGA)[-43.95]GLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF.	1	6.0	6.0	0.0016230024991709235	0.03534590562154748	0.003005259203606311
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	787	1204	1611	75	8	6537.644518624999	6537.62254925293	958	gi|16763875|ref|NP_459490.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	17043.211942868653	98	159	G.YLVGGISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD.	0	8.0	6.0	0.0023804086755946073	0.040466947485108325	0.003003003003003003
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1457	2013	2690	30	19	15478.088216859373	15477.992399411623	5400	gi|16766110|ref|NP_461725.1| DNA-binding protein [Salmonella typhimurium LT2]	15477.992399411622	1	133	.MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGEEKTWTGQGRTPKPIAQALAAGKSLDDFLI.	0	6.0	4.0	0.014504437619397256	0.043513312858191766	0.003000750187546887
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1662	2289	3058	106	15	12106.086951328125	12105.95568295044	938	gi|16763865|ref|NP_459480.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	12063.945116239014	1	109	.(M)[42.01]FGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKVTINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLPPGFKMPF.	0	7.0	6.0	0.022785341273496226	0.04557068254699245	0.0029985007496251873
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	985	1415	1892	50	16	14442.742364937498	14442.689371304932	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	4.0	4.0	0.022800935128089995	0.04560187025617999	0.00299625468164794
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1010	1440	1926	39	13	8113.326955066408	8113.281858640137	1836	gi|16764314|ref|NP_459929.1| protein chain initiation factor IF-1 [Salmonella typhimurium LT2]	8244.32235546631	2	72	M.AKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR.	0	5.0	4.0	0.023083546858637942	0.046167093717275884	0.0029940119760479044
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1596	2210	2952	26	11	11546.241567539062	11546.241567539062	4682	gi|16765746|ref|NP_461361.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	8737.707044797364	1	75	.(MPEMEK)[2808.53]EQLVEIANTVMPFGKYQGRRLIDLPEEYLLWFARKDQFPAGKLGELMQITLLIKTEGLTQLVQPLKRPL.	1	8.0	8.0	3.875784828381778E-5	0.0499326501253745	0.0029917726252804786
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	569	976	1307	42	6	3894.1233470703137	3894.112180905762	6642	gi|16766730|ref|NP_462345.1| 30S ribosomal subunit protein S10 [Salmonella typhimurium LT2]	11759.412664609375	1	33	.MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTG.A	0	4.0	4.0	6.671036119666663E-4	0.055369599793233304	0.0037369207772795215
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1926	2853	3810	16	7	7433.991024953125	7433.976024953125	736	gi|16763763|ref|NP_459378.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10106.413343625489	3	69	V.MKNLIAELLLKLAQKEEESKELVAQVEALE(IIVTAMLRNMAQNEQEMLIRQVEGALEGVKPDASVPD)[-21.96].H	1	9.0	8.0	1.196784142504174E-5	0.055906001212876866	0.0037341299477221808
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	991	1421	1900	60	15	14442.754401679686	14442.689371304932	6588	gi|16766703|ref|NP_462318.1| 50S ribosomal subunit protein L17 [Salmonella typhimurium LT2]	14442.689371304932	1	127	.MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEKTEAAAE.	0	4.0	4.0	0.02802619887098813	0.05605239774197626	0.0037313432835820895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1148	1621	2167	90	20	12762.06094478125	12761.967558103028	6608	gi|16766713|ref|NP_462328.1| 50S ribosomal subunit protein L18 [Salmonella typhimurium LT2]	12761.967558103028	1	117	.MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF.	0	5.0	4.0	0.02936421361143312	0.05872842722286624	0.0037285607755406414
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1562	2155	2879	15	12	10770.601981843753	10770.491872983399	624	gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	11851.001493649903	10	107	M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV.	0	5.0	4.0	0.001606488785251885	0.05944008505431975	0.0037257824143070045
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	268	668	896	24	4	2926.443164375	2926.4307310156255	7904	gi|16767365|ref|NP_462980.1| transcriptional repressor [Salmonella typhimurium LT2]	12173.194353299561	66	91	A.FTGQPLPDDADLRKERSDEIPEAAKE.I	0	6.0	4.0	2.9828067835119984E-5	0.06580241131474959	0.0037230081906180195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	201	597	802	16	6	3364.863271234376	3364.863271234376	8262	gi|16767544|ref|NP_463159.1| putative putrescine/ornithine transport protein [Salmonella typhimurium LT2]	47357.90213604492	1	125	.M(SSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIYGWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGN)[-9998.05]IAMVVIGVGYLSYFFPILKDPLVL.T	1	9.0	9.0	2.144945500438996E-5	0.06604896437648948	0.003720238095238095
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	633	1042	1395	185	20	11526.338794265626	11526.338794265626	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KAREVKRVALAD(KYFAKRAELKAIISDV)[544.33]NATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	25.0	14.0	0.03604563932333716	0.06640518608405156	0.0037174721189591076
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1214	1701	2274	44	20	18051.333409218758	18051.189726071778	6702	gi|16766760|ref|NP_462375.1| peptidyl-prolyl cis-trans isomerase A [Salmonella typhimurium LT2]	20319.481222348633	25	190	A.AKGDPHVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPTKPVVILSAKVLP.	0	5.0	5.0	0.0022355502261622844	0.09165755927265366	0.008172362555720654
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	506	913	1223	79	13	7709.9004249531245	7709.889826016843	4950	gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2]	49441.89538403076	153	225	R.MVAQSDVSVLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLF.Q	0	9.0	8.0	2.8955711417223532E-5	0.13812605231108344	0.011135857461024499
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1227	1715	2292	114	13	11205.3241294375	11205.2891294375	6636	gi|16766727|ref|NP_462342.1| 50S ribosomal subunit protein L23 [Salmonella typhimurium LT2]	11206.238477902833	1	100	.MIREERLLKVLRAPHVSEKASTAME(KTNT)[1.06]IVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGA(E)[-2.00].	2	22.0	17.0	0.01031142401239886	0.13975879897608756	0.01112759643916914
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	526	933	1250	100	8	6394.596734656249	6394.527944760746	4102	gi|16765457|ref|NP_461072.1| putative outer membrane receptor [Salmonella typhimurium LT2]	112087.83976955933	342	399	R.DTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLM.A	0	13.0	11.0	3.5096332459309456E-5	0.14610269922796637	0.011860637509266123
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	616	1025	1372	188	19	11543.343271648437	11543.323271648436	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.(KAREVKRVALADKYFA)[42.01](KRAELKAIISD)[519.30]VNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	18.0	13.0	0.08051952123552615	0.15190557896058732	0.011851851851851851
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	714	1129	1511	70	13	6377.595151695313	6377.5822507910125	6500	gi|16766660|ref|NP_462275.1| putative multidrug resistance protein [Salmonella typhimurium LT2]	34524.2361433081	2	58	M.KTLTRKLSRTAITLVLVILAFIAIFRAWVYYTESPWTRDARFSADVVAIAPDVAGLI.T	0	5.0	4.0	0.006795138521638525	0.15628818599768607	0.011843079200592153
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1877	2694	3598	45	15	12290.604139242187	12290.709917264401	6980	gi|16766900|ref|NP_462515.1| C4-dicarboxylic acids transport protein [Salmonella typhimurium LT2]	45647.78961010498	1	116	.MKTSLFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPGAGMNVDPATLDAQA.V	0	6.0	5.0	0.0017712816905259999	0.161186633837866	0.011834319526627219
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1567	2161	2887	23	13	10770.536234164063	10770.491872983399	624	gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	11851.001493649903	10	107	M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV.	0	4.0	4.0	0.0039954992757636094	0.17979746740936242	0.012564671101256468
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	615	1024	1371	183	16	11543.344225624998	11543.289225624998	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	2	96	M.KAREVKRVA(LADKYFA)[561.28]KRAELKAIISDVNATDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW.	1	15.0	13.0	0.09626914144176187	0.18161831370027207	0.012555391432791729
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	191	586	787	65	10	6348.5748714374995	6348.503797727051	1108	gi|16763952|ref|NP_459567.1| putative inner membrane protein [Salmonella typhimurium LT2]	25827.148351865235	189	247	P.ALGFALLISMMLSSKLMPYLGLGFLIAAYTKLDIIAIALFAVVLAFIISQFLNTSQQEG.	0	5.0	4.0	0.012235190086345637	0.1957630413815302	0.013284132841328414
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1141	1614	2158	88	20	12761.063620328123	12760.954931455079	3164	gi|16764980|ref|NP_460595.1| putative ABC-type transport system membrane component [Salmonella typhimurium LT2]	25567.802118497315	116	226	Y.NALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINNLKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRLLRHYGQGY.	0	5.0	5.0	0.012575537143447687	0.201208594295163	0.01327433628318584
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	845	1263	1690	49	12	10075.494641109377	10075.567381101071	1142	gi|16763969|ref|NP_459584.1| ferric enterobactin/enterochelin transporter [Salmonella typhimurium LT2]	34300.02796001953	115	212	F.STPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGAVLEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQTLKVALAPVVIAGIVALF.L	0	8.0	8.0	3.8000857534608476E-5	0.21424726980550413	0.013264554163596167
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	977	1404	1878	47	20	16007.650885624998	16007.507131772461	8076	gi|16767451|ref|NP_463066.1| putative phage tail protein [Salmonella typhimurium LT2]	23763.634641843262	1	141	.MDKLLLPPPLASDERFSILANIAAERFAQIDLTALLVYLVDIVDASALPSLAEQFHVQGLEGWLFAANEQEKRELIKQAIELHKYKGTPWAVRRVLEILSLPGTISEWFEYGGKAYFFKVEIKLINQGMDENLFNNLVDLI.H	0	6.0	6.0	0.0028945026150261374	0.22287670135701257	0.013254786450662739
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1271	1762	2355	42	15	14043.623852039062	14043.655828671872	7660	gi|16767242|ref|NP_462857.1| putative ubiquinone biosynthetic protein [Salmonella typhimurium LT2]	63369.52639217895	425	546	D.LWKTAKPFLESWIKDQVGIPALTRALKEKAPFWVEKMPEIPELVYDSLRQGKYLQHSVDKIARELQVNHVRQSQSRYLLGIGATLLLSGSFLLVNRPEWGLMPGWLMVGGVVVWLVGWRKTR.	0	4.0	4.0	0.01194551370322584	0.22696476036129096	0.013980868285504048
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1341	1856	2480	132	20	14919.1174558125	14919.092516141356	3274	gi|16765036|ref|NP_460651.1| peptide transport protein [Salmonella typhimurium LT2]	36144.478410916745	2	133	M.IIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFSIPVFWLALLLTLF.F	0	8.0	8.0	0.0037581589609511773	0.2818619220713383	0.016176470588235296
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1516	2105	2812	50	14	10849.75916977344	10849.67129345459	3172	gi|16764984|ref|NP_460599.1| putative inner membrane protein [Salmonella typhimurium LT2]	29696.24273510498	172	266	T.DAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPRLRDDETGYGPRGKDFIIHVDIPRDIENAWQVLQADTTLRSALGQRALR.	0	7.0	5.0	0.007674382804765081	0.2993009293858382	0.01763409257898604
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1198	1683	2250	93	17	15852.360314253909	15852.216402249753	4782	gi|16765796|ref|NP_461411.1| putative periplasmic protein [Salmonella typhimurium LT2]	39098.22964687866	1	142	.(M)[42.01]RYRVILFCLFGLLPVQLLWAAPAQRTFSDWQVTCNNQNFCVARNTGEHHGLVMTLSRSAGARTDAVLRIDRGGLAPPDAKEAAIAPRLLLDGKPLSFNSPHWRVSPWHLMTGDPATITAFLQTIQDAQAITLKNGVQTLSL.A	0	7.0	7.0	0.0024272920257550866	0.3301117155026918	0.018355359765051395
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	351	752	1008	78	17	8419.757127652345	8419.681341367184	7176	gi|16766998|ref|NP_462613.1| O-antigen ligase [Salmonella typhimurium LT2]	46062.06461544555	2	73	M.(L)[42.01]TTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIILMVITAIYQVSRSPKSFPPLFKNSVFYSVA.V	0	4.0	4.0	0.013267065712696664	0.3316766428174166	0.018341892883345562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	552	959	1284	39	10	6525.637554984376	6525.586622434079	8150	gi|16767488|ref|NP_463103.1| DNA-damage-inducible protein F [Salmonella typhimurium LT2]	47905.33693905395	2	63	M.PLFTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVFLGGVAVGATATSFLFMLLL.F	0	7.0	4.0	0.007358464777656475	0.3605647741051673	0.020527859237536656
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1786	2487	3322	22	11	9309.051696285158	9308.96030636353	8560	gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella typhimurium LT2]	80820.45850964112	394	477	N.ENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVS.E	0	6.0	6.0	7.45698561888545E-5	0.40192685268314815	0.023443223443223443
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1435	1982	2648	29	26	20431.469980546874	20431.324041562497	1602	gi|16764200|ref|NP_459815.1| putative ABC transporter ATPase component [Salmonella typhimurium LT2]	59778.26546688598	2	187	M.LVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNERIGKLRQDQFAFETFTVLDTVIMGHGELWEVKQERDRIYALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPLEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLD.I	0	4.0	4.0	0.0035904821354045143	0.43444833838394625	0.024890190336749635
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	795	1212	1622	40	10	8139.2218909765625	8139.172796445313	162	gi|16763472|ref|NP_459087.1| putative secreted protein [Salmonella typhimurium LT2]	10296.443510251465	22	96	A.AEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK.	0	4.0	4.0	0.010779891649239457	0.44197555761881774	0.02487198244330651
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	354	756	1014	141	15	9044.95100301172	9044.938635068358	2066	gi|16764426|ref|NP_460041.1| beta-hydroxydecanoyl thioester dehydrase [Salmonella typhimurium LT2]	19148.760793881836	91	172	L.VGFYLGWLGGEGKGRALGVGEVKFTGQVLPTARKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTAHDLKVGLFQDTSAF.	0	6.0	6.0	0.027442145920585262	0.46651648064994944	0.02631578947368421
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1832	2608	3483	10	14	12861.5415875	12861.5415875	1504	gi|16764150|ref|NP_459765.1| putative pectinesterase [Salmonella typhimurium LT2]	46049.95704098266	1	122	.(MNTLSVSRLALALAFGVTLSACSSTPPD)[127.05]QIPSDQTAPGTASRPILSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVDAAMVKRTNKRQYIAIMPGDY.Q	1	5.0	5.0	0.0028511328052361258	0.4685857792556531	0.026296566837107377
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1941	2884	3851	24	25	21159.18897798047	21159.233679013676	7924	gi|16767375|ref|NP_462990.1| putative transaldolase [Salmonella typhimurium LT2]	23624.402174191895	2	200	M.ELYLDTANVAEVERLARIFPIAGVTTNPSIVAASKESIWDVLPRLQNAIGEEGTLFAQTMSRDAKGMVEEAKRLNNAIPGIVVKIPVTAEGLAAIKLLKKEGIVTLGTAVYSASQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEHHAPDSMVLAASFKTPRQALDCLLAGCQAITLPLDVAQQMLNTPAV.E	0	4.0	4.0	0.004410013389481016	0.4718714326744687	0.026277372262773723
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	119	504	678	61	8	4415.42176028125	4415.434278684079	3972	gi|16765392|ref|NP_461007.1| DD-carboxypeptidase [Salmonella typhimurium LT2]	43127.08493252319	2	43	M.LLKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVL.M	0	5.0	4.0	0.008960980708049661	0.474931977526632	0.0262582056892779
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	798	1215	1626	139	9	10619.491519625	10619.364240842286	6496	gi|16766658|ref|NP_462273.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	10708.394170957032	2	90	M.(N)[42.01]VYTFDFNDIKNQSDFYREFTQTFGLASEKVSDLDTLWDAVMSDILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVRH.	0	6.0	5.0	0.48591445587320425	0.48591445587320425	0.026239067055393587
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	869	1289	1724	104	17	9698.29391039844	9698.376547055665	3160	gi|16764978|ref|NP_460593.1| putative ABC transporter permease component [Salmonella typhimurium LT2]	23596.1850912146	129	215	L.QVIINIELPQMLRFSVPGIINEFSSVLKATPFAYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS.	0	7.0	5.0	0.02483850178043064	0.49677003560861277	0.026219956300072834
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	842	1260	1686	46	14	10075.480577390626	10075.573782163086	8978	gi|17233439|ref|NP_490558.1| PsiA [Salmonella typhimurium LT2]	28890.093927579346	1	90	.(M)[42.01]IHSSHALVTLKPARQAALQAILTVEESRRRGARLPALPHARTFLRVLSGSSRINTTVAQRIPGLNWEPKNRLTSLKQVEEALDRLISSH.G	0	4.0	4.0	0.00906108306853567	0.4983595687694618	0.026200873362445413
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	479	886	1187	15	12	7977.955066640626	7977.9780027441375	2374	gi|16764582|ref|NP_460197.1| putative peptidase T [Salmonella typhimurium LT2]	44991.87104244751	212	284	A.SVNIKIVGNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMHYIIRDFDR.K	0	4.0	4.0	1.0648781777261822E-4	0.5184022472520091	0.02618181818181818
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	789	1206	1614	61	16	9517.33554075	9517.234163480225	7666	gi|16767245|ref|NP_462860.1| Sec-independent protein secretion pathway component [Salmonella typhimurium LT2]	29281.496580319825	1	85	.(M)[42.01]AVEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHLVAAPLIKQMPQGATMIATDVASPFFTPIKLTFMVSLILSAP.V	0	4.0	4.0	0.013777333018181646	0.5235386546909025	0.02616279069767442
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1121	1588	2123	94	9	9228.06143550781	9228.081678586426	8580	gi|16767708|ref|NP_463323.1| putative arginine repressor [Salmonella typhimurium LT2]	18266.679712491456	53	137	R.LLKLLGAIKIRNTKGQKIYSVNPQRRPSPDAGRSIAEMVVSVEHNSEFILIHTAAGYGRAVARILDYHALPEILGVVAGSSIVWV.A	0	10.0	10.0	1.029546973071132E-4	0.5495151903257155	0.027596223674655047
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1563	2156	2880	30	11	10770.596745636722	10770.491872983399	624	gi|16763707|ref|NP_459322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	11851.001493649903	10	107	M.PTAIEKALDFIGGMNTSASVPHSMDESTAKGILKYLHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQLKELV.	0	4.0	4.0	0.015239439446274861	0.5638592595121699	0.02830188679245283
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1696	2337	3122	11	8	8719.4925365625	8719.529363828122	8164	gi|16767495|ref|NP_463110.1| quinone oxidoreductase [Salmonella typhimurium LT2]	35243.43764324707	73	154	V.GNGVEHIRVGDRVVYAQSTLGAYSSVHNVTADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVG.L	0	4.0	4.0	1.2279445842427027E-4	0.6248227557219473	0.02973168963016679
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1000	1430	1912	23	12	8113.340273546876	8113.224020200196	416	gi|16763601|ref|NP_459216.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	15141.941797452393	2	70	M.YDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAKSVKFKYPRQRKTVVADGIGQGYKEVQ.E	0	4.0	4.0	0.005646166663792021	0.6380168330084983	0.029710144927536233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1138	1611	2154	89	19	12761.041416347656	12760.975858884274	5752	gi|16766286|ref|NP_461901.1| gcv operon regulator [Salmonella typhimurium LT2]	34540.169260220944	1	112	.(M)[42.01]SKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPPSFAIQWLVPR.L	0	5.0	5.0	0.014669678645927662	0.6454658604208171	0.029688631426502535
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1101	1556	2080	14	7	7446.832323546876	7446.889784055172	2842	gi|16764816|ref|NP_460431.1| replication termination protein [Salmonella typhimurium LT2]	35578.93446941894	1	65	.MSRYDLVERLNGTFRQIEQHLAALTDNLQQHSLLIARVFSLPQVTKEAEHAPLDTIEVTQHLGKE.A	0	4.0	4.0	0.006432609038404488	0.7011543851860892	0.029667149059334298
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1652	2279	3044	48	12	11210.745223796877	11210.88941021484	4066	gi|16765439|ref|NP_461054.1| GDP-D-mannose dehydratase [Salmonella typhimurium LT2]	42069.23163052124	270	373	Q.LGIKLRFEGEGINEKGIVVSVTGHDAPGVKPGDVIVAVDPRYFRPAEVETLLGDPSKAHEKLGWKPEITLSEMVSEMVANDLEAAKKHSLLKSHGYEVAIALES.	0	5.0	4.0	0.019163532878460624	0.7090507165030431	0.02964569775849602
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	581	989	1324	44	12	9850.825007375002	9850.764925198979	6182	gi|16766501|ref|NP_462116.1| adenylyl transferase for glutamine synthetase [Salmonella typhimurium LT2]	108425.38737316651	1	88	.MTPLSSPLSQYWQTVVERLPEGFTETSLSVQAKSVLTFSDFALDSVIAHPEWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMR.E	0	4.0	4.0	0.011997725036696579	0.7198635022017947	0.029624277456647398
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	528	935	1252	106	10	6394.599028359375	6394.553331571045	3842	gi|16765326|ref|NP_460941.1| putative permease [Salmonella typhimurium LT2]	32493.734552579346	247	306	A.YVNPVVAVLLGTGLGGERLSPVEWAALGVIVFAVVLVTLGKYLFPVKAVVTPCKTEDSRQ.	0	5.0	4.0	0.0673790623662014	0.7411696860282154	0.0296028880866426
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	356	758	1016	150	21	13870.591350437502	13870.635870175778	8702	gi|16767768|ref|NP_463383.1| type I restriction enzyme specificity protein [Salmonella typhimurium LT2]	52162.5976125769	344	469	W.LRSSYLQDIINSEIKSGAQGKLALARIKSLPLILPPLQEQHEIVRRVEQLFAYADTIEKQVNNALTRVNSLTQSILAKAFRGELTAQWRAENPELISGENSAAALLEKIKAERAASGGKKTSRKKA.	0	6.0	6.0	0.03793581312060869	0.7587162624121737	0.02958152958152958
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1854	2648	3536	99	14	12159.528663570312	12159.57216091675	8778	gi|16767806|ref|NP_463421.1| pyruvate formate lyase-activating enzyme [Salmonella typhimurium LT2]	32258.24780102295	178	287	A.WKSECHHRLTGRDNTHIKHSIRFLAARGKLAELRLLVIPGQVDYAAHIDSLAAFITSLGEVPVRLNAFHAHGVYGEAKAWPGATPQEVERLADGLRARGVAKLILPALYL.	0	12.0	5.0	0.03490697368752204	0.7679534211254849	0.03028118240807498
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1921	2814	3758	14	42	32684.81492428125	32684.50573559326	8532	gi|16767684|ref|NP_463299.1| putative antibiotic maturation protein [Salmonella typhimurium LT2]	48663.59182949585	141	439	L.AARAEQASLKADKRITNTEGGSFNSHYGIKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMADLQAPEWVGAECARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGAVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASSPFDSEGVRTERRDIVKDGVLTQWLLTNYSARKLGLKSTGHAGGIHNWRIAGQGLNFEQLLKEMGTGLVVTELMGQGVSGITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKEMWRNIVTVGDDIETRSNIQCGS.V	0	4.0	4.0	1.1727519198175676E-4	0.790802892020792	0.03025936599423631
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	317	717	962	22	12	8517.718350375002	8517.635519223628	7642	gi|16767233|ref|NP_462848.1| putative transport protein [Salmonella typhimurium LT2]	33562.75118084472	92	165	T.VLTPLYITLIYDVMSQRRLRWGYAFSALLAVIGAGIIRYDRVTDHFWVGLLLVQLSNISFAIGMVGYKRLMETR.P	0	4.0	4.0	1.5850572182641583E-4	0.8013033315453485	0.03095752339812815
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	809	1226	1640	68	9	6392.61777896875	6392.667501645506	4256	gi|16765534|ref|NP_461149.1| fructose-specific transport protein [Salmonella typhimurium LT2]	57679.74790783447	297	360	P.GLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYMAKLISTKLKLPQSMEALKPILIIPLISSLVVG.L	0	9.0	7.0	2.0079798875904175E-4	0.8359641669984905	0.031654676258992806
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1986	3144	4198	79	17	9042.942310386718	9042.86401196045	8910	gi|17233419|ref|NP_490523.1| putative inner membrane protein [Salmonella typhimurium LT2]	17116.203489499512	77	161	G.GQAVFLNTLGLRPDCLLPRTASATQLKAAVSSWLRRARGWRQATTESLSLRERQALCATLAGLSARTAPGSASAPKPFTAIAAAR.	0	6.0	5.0	0.039632432426146474	0.8719135133752225	0.03235082674335011
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	247	645	866	42	6	6247.03710290625	6247.049921231687	5474	gi|16766146|ref|NP_461761.1| putative flavoprotein [Salmonella typhimurium LT2]	54725.84311886352	386	440	C.RQHGRDIARQWALAPLPETTQQIAPVEETITCTAADLGPKMQCSVCQWIYDPALG.E	0	4.0	4.0	2.1357990775460145E-4	0.8773867768147194	0.032327586206896554
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	987	1417	1895	136	17	14441.781902902345	14441.984804349362	6256	gi|16766538|ref|NP_462153.1| putative transport protein [Salmonella typhimurium LT2]	48681.927782254636	315	443	G.WVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS.	0	6.0	6.0	0.04442835024294209	0.8885670048588418	0.03230437903804738
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	521	928	1243	102	8	6394.590875281249	6394.531557279053	2200	gi|16764495|ref|NP_460110.1| putative curli operon transcriptional regulator [Salmonella typhimurium LT2]	30531.95692272705	2	59	M.(P)[42.01]RLLILVAVLLLSGCLTAPPKQAAKPTLMPRAQSYKDLTHLPAPTGKIFVSVYNIQDE.T	0	7.0	6.0	0.02240603880782601	0.9186475911208665	0.03299856527977044
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1187	1667	2228	28	8	7272.03159465625	7271.942014890134	7836	gi|16767331|ref|NP_462946.1| putative Na+/galactoside symporter [Salmonella typhimurium LT2]	49818.180238919675	2	69	M.KLSIVEKIGFGAGDMAINVVIIAMQLLLAYFYTDIYGLSAADVGVLFVVVRMIDAIIDPAMGVLTDKL.N	0	4.0	4.0	0.011700551060629266	0.9360440848503412	0.03369175627240143
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	614	1023	1370	93	18	11543.356895304687	11543.359296994626	1150	gi|16763973|ref|NP_459588.1| 2,3-dihydroxybenzoate-AMP ligase [Salmonella typhimurium LT2]	59731.54228420776	435	536	Q.INRGGEKIAAEEIENLLLRHPVVIHAALVSMEDELLGEKSCAYLVVKEPLRAVQVRRFLREQGVAEFKLPDRVECVASLPLTPVGKVDKKQLRQRLASRSPL.	0	5.0	4.0	0.046905021290495647	0.9381004258099129	0.0336676217765043
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1221	1709	2284	38	17	11206.328899949222	11206.210199552	7244	gi|16767032|ref|NP_462647.1| putative purine/xanthine transport protein [Salmonella typhimurium LT2]	48928.30660839599	128	233	T.MMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGY.L	0	5.0	5.0	1.5912943291785344E-4	0.9510297443128122	0.03364352183249821
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	619	1028	1376	170	18	11527.336622632814	11527.25863476318	7138	gi|16766979|ref|NP_462594.1| L-lactate dehydrogenase [Salmonella typhimurium LT2]	42857.98211880249	282	396	D.GVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLVQELGKSLPAALAPMSKGDAA.	0	7.0	7.0	0.04774637655466339	0.9549275310932679	0.033619456366237484
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	435	842	1128	53	13	7825.930015003906	7825.94056530518	8630	gi|16767733|ref|NP_463348.1| putative DNA helicases [Salmonella typhimurium LT2]	132378.04018230957	996	1061	A.LTFDYKERKDLKTAETKIYTLHGVEQHDNFLNQTFENTDKHITIVSPWLTWQKLEQTGFLDSMITA.C	0	8.0	7.0	1.9935951372221359E-4	0.9614172531459613	0.034310221586847746
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	245	643	863	70	6	6247.033440796875	6247.004049497072	4604	gi|16765707|ref|NP_461322.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	9972.923879819336	1	57	.MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELESGDDHSVEAVYANV.S	0	6.0	5.0	0.013222378496432392	0.9652336302395645	0.03428571428571429
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	316	716	960	93	14	8517.661439976564	8517.561269956055	6240	gi|16766530|ref|NP_462145.1| putative inner membrane protein [Salmonella typhimurium LT2]	11541.227422910157	27	99	S.ASRRDWLETTGAYDRGWNTVLSLRSWALVGSSVMAIWTIRHPNMLVRWAKRGLGIWSAWRLVKTTLRQQQLRG.	0	4.0	4.0	0.032544447250672945	1.0414223120215342	0.034261241970021415
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	90	469	631	57	9	11063.957599148434	11063.822340207516	5378	gi|16766099|ref|NP_461714.1| tricarboxylic transport [Salmonella typhimurium LT2]	53017.26645870727	1	106	.(M)[42.01]DTWIYLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPINGVAILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPMAQQG.K	0	5.0	5.0	0.01002890346915833	1.0730926711999413	0.03566333808844508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	607	1015	1359	79	13	9533.33148184375	9533.210653500975	8032	gi|16767429|ref|NP_463044.1| phosphoribosylglycinamide synthetase [Salmonella typhimurium LT2]	45892.11824627441	1	93	.MKVLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQNVAIGVTDIPALLSFAQHEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFG.P	0	4.0	4.0	0.02557381497324537	1.0741002288763055	0.03563791874554526
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1348	1867	2495	116	39	26846.585956253908	26846.64525433105	6950	gi|16766885|ref|NP_462500.1| putative inner membrane protein [Salmonella typhimurium LT2]	46877.53336544555	191	439	K.GKELKDDPEYQRRLAEGLIKPAQKESKNTVVTSRAKLSVALFLTSAIVIVLLGLIPALRPMVETAKGLQPLSMSAAIQITMLSFACLIVLLCRPQVDQIISGTVFRAGALAIVCAFGLAWMSETFVNGHIALIKAEVQTLLQQHTWLIAIMMFFVSAMVSSQAATTLILLPLGLALGLPAYALIGSWPAVNGYFFIPVAGQCLAALAFDDTGTTRIGKYVLNHSFMRPGLVNVIVSVIVGLLIGKMVLA.	0	6.0	6.0	0.028532367429843625	1.1127623297639013	0.03632478632478633
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	508	915	1226	97	14	7709.887167507812	7709.8898260168435	4950	gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2]	49441.89538403076	153	225	R.MVAQSDVSVLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLF.Q	0	9.0	8.0	2.502398007957205E-4	1.1937070140319515	0.03772241992882562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	113	498	670	47	8	4568.47349809375	4568.47349809375	2230	gi|16764510|ref|NP_460125.1| putative transport protein [Salmonella typhimurium LT2]	43739.90258999389	1	40	.(MSPSDVPINW)[-.86]KRNLTVTWLGCFLTGAAFSLVMPFLPLYVE.Q	1	6.0	6.0	0.03583965086640701	1.257866853937762	0.03982930298719772
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	566	973	1303	50	12	9980.868686546875	9980.95139141602	9048	gi|17233470|ref|NP_490592.1| oriT nickase/helicase [Salmonella typhimurium LT2]	191565.82770367188	102	192	R.LTEAHNQAVDIAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVVNVTQHDGEWKTLSSDKVGKTGFIENVYAN.Q	0	5.0	5.0	2.2946786982906074E-4	1.2829940608505708	0.03980099502487562
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	874	1294	1731	48	13	10059.481131523436	10059.38583202881	9006	gi|17233452|ref|NP_490572.1| OrfG2 [Salmonella typhimurium LT2]	18464.817602353516	2	85	M.(H)[42.01]KSDAEKMESIIDKHDRIYRRQVRVFKNLGFLSIITAVLSVITALFSTSLLLKYTLCVVICVCLIYLVFMFFCLDRYIALSRQT.L	0	4.0	4.0	0.014139199421839554	1.2866671473873994	0.03977272727272727
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	217	614	824	46	9	4929.728021320314	4929.691465573734	5512	gi|16766165|ref|NP_461780.1| formate hydrogen-lyase transcriptional activator [Salmonella typhimurium LT2]	78646.77528591675	513	553	Q.TDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLR.E	0	5.0	5.0	3.77060359512367E-4	1.2895523357120549	0.0397444996451384
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1963	3102	4142	10	14	11759.490556562501	11759.470556562499	3374	gi|16765087|ref|NP_460702.1| oligopeptide transport protein [Salmonella typhimurium LT2]	37181.87880535644	233	335	G.ICDKVLV(MYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPPLEAFSPGRLRACF)[29.57]KPVEELL.	1	5.0	5.0	0.05148171785708757	1.3485092926293127	0.0425531914893617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1940	2880	3846	28	11	8982.77258748047	8982.65128155274	442	gi|16763614|ref|NP_459229.1| putative outer membrane protein precursor [Salmonella typhimurium LT2]	89585.15330334229	1	83	.(M)[42.01]AMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNT.L	0	4.0	4.0	0.010784235690490685	1.3588136970018263	0.04323175053153792
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	586	994	1331	147	13	8985.905731558596	8985.793592648924	8666	gi|16767751|ref|NP_463366.1| uxu operon transcriptional repressor [Salmonella typhimurium LT2]	29577.95916958374	2	80	M.KSNTSQQRPYQEVGAMIRDLIVQTPYRPGERLPPEREIAERLNVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSADNN.E	0	8.0	8.0	0.01338096883339373	1.3648588210061605	0.04320113314447592
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	390	796	1067	82	11	7882.958824230468	7882.92496319336	1830	gi|16764311|ref|NP_459926.1| SlsA [Salmonella typhimurium LT2]	24206.31694241089	155	225	Q.EITLARIVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNNEMLDSQR.	0	6.0	5.0	0.027807309927357547	1.3903654963678773	0.043170559094125975
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	523	930	1246	97	7	6394.600897863281	6394.53962536377	4216	gi|16765514|ref|NP_461129.1| vancomycin sensitivity [Salmonella typhimurium LT2]	27472.551542478028	1	55	.(M)[42.01]LKRVFYSLLVLVGLLLLTVLGLDRWMSWKTAPYIYDELQDLPYRQVGVVLGTAK.Y	0	6.0	6.0	0.0375983437595974	1.3911387191051037	0.04314002828854314
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	114	499	671	40	6	4568.477429976563	4568.468877988282	3558	gi|16765180|ref|NP_460795.1| putative exported protein [Salmonella typhimurium LT2]	10616.525942044678	19	58	S.MVVLVVGLALWFFVNRASSRANEQIELLEALLDQQKRQNA.L	0	7.0	6.0	4.6224909300002546E-4	1.4510000990254417	0.04381625441696113
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	781	1198	1603	61	8	8720.2776928125	8720.2776928125	7294	gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2]	11089.657293515625	22	96	A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPE)[15.03].M	1	17.0	12.0	2.854571643226833E-4	1.4723671571444688	0.043785310734463276
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	784	1201	1607	20	9	8720.287750796875	8720.287750796875	7294	gi|16767058|ref|NP_462673.1| putative inner membrane protein [Salmonella typhimurium LT2]	11089.657293515625	22	96	A.DSPFSSLQSAHEKNTILKD(LRKMCTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPE)[15.04].M	1	11.0	9.0	2.951351384934633E-4	1.5017135488426026	0.04446012702893437
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1470	2026	2707	40	21	15479.12499542578	15478.957624631354	266	gi|16763526|ref|NP_459141.1| preprotein translocase [Salmonella typhimurium LT2]	101989.5971967749	534	668	Q.IAQIKADWQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLD.V	0	9.0	8.0	2.2586859410604209E-4	1.5683585398927224	0.04442877291960508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1524	2113	2823	63	20	15617.1250903125	15617.06384487671	6420	gi|16766620|ref|NP_462235.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	24710.583868222657	78	210	G.YVYDMITDFNGAPSITLTEFAAQCRYEEDVAVLRRLLKKLKRYLLDNHIVTMSLKPQNILCQRISESEVVPVVCDNLGESTFIPLATWSTWCCERKLERVWQRFIAQPALAVALERDAQPKDKKRLALTSHEA.	0	5.0	5.0	0.04547850896597895	1.6372263227752422	0.04580690627202255
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	582	990	1326	101	11	9850.820320484376	9850.76289959473	3016	gi|16764904|ref|NP_460519.1| putative alpha amylase [Salmonella typhimurium LT2]	65790.15470333619	48	137	G.DGWFTLDVAGVTPGTEYNFVLSDGMVVPDPASRAQKTDVNGPSYVVDPGSYTWRNTGWKGSRWEQAVVYEMHTGTFTPEGTFRAAIAKLP.Y	0	11.0	10.0	2.9771202081611554E-4	1.6526240943959967	0.045774647887323945
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	505	912	1222	72	12	7709.896470484375	7709.865602689207	2512	gi|16764650|ref|NP_460265.1| NADP-specific glutamate dehydrogenase [Salmonella typhimurium LT2]	48885.46839733642	377	447	G.VATSGLEMAQNAARLSWKAEKVDARLHHIMLDIHHACVEYGGDNKHTNYVQGANIAGFVKVADAMLAQGVI.	0	4.0	4.0	0.04094514406824665	1.6787509067981126	0.04574243490499648
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1595	2209	2951	71	16	11546.277819374998	11546.186987119145	1100	gi|16763948|ref|NP_459563.1| putative inner membrane protein [Salmonella typhimurium LT2]	102595.46957989258	2	102	M.NKESIFRQLELRLAGCSLTADALGAFSAMAIADSLRQKRSIISHHLNNLHREQRVVKVNSRPVLFLPVEALRRHHRLAVRQGDYASIQALCAERQDSLELL.I	0	4.0	4.0	0.021409784420973084	1.777012106940766	0.04781997187060478
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1925	2849	3804	12	10	9989.00152467969	9988.868726926266	7760	gi|16767294|ref|NP_462909.1| putative acetyltransferase [Salmonella typhimurium LT2]	37007.82546062988	14	98	E.STAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDGWDALAHHQMVVDEEGNLVAVGRLYINADNEASIRFMAVHPSVQD.K	0	4.0	4.0	3.183942235159348E-4	1.8008384970735252	0.04848910751932537
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1375	1907	2548	86	26	17485.506701093753	17485.556772427983	8142	gi|16767484|ref|NP_463099.1| p-hydroxybenzoate/octaprenyltransferase [Salmonella typhimurium LT2]	32751.379053311768	2	157	M.EWSLTQSKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGMPQLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVVLVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMA.F	0	4.0	4.0	0.02514064614595109	1.8352671686544295	0.04985955056179775
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	525	932	1248	103	7	6394.600897863281	6394.544172482914	7756	gi|16767292|ref|NP_462907.1| tRNA processing exoribonuclease BN [Salmonella typhimurium LT2]	32746.631536679688	1	56	.(M)[42.01]LKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSLLSLVPLIAVVFA.L	0	7.0	6.0	0.04969539725448626	1.8387296984159915	0.04982456140350877
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	503	910	1219	106	11	7709.880736230468	7709.806993680416	8410	gi|16767618|ref|NP_463233.1| putative potassium channels [Salmonella typhimurium LT2]	40487.64872570556	247	318	N.LSAEQLSRSIQDPGSSQSVASIMNPMLGDTGFALPVPASVAPMRYGALMRYMKLHHDATVLGISHCKNGRGM.E	0	12.0	9.0	3.9313316178283734E-4	1.8469315502464623	0.05119214586255259
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	270	670	899	75	7	4506.4671082187515	4506.471807675778	6930	gi|16766875|ref|NP_462490.1| low-affinity phosphate transporter [Salmonella typhimurium LT2]	53568.62865276855	2	43	M.LHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVI.Y	0	4.0	4.0	0.02911311146013855	1.8632391334488672	0.05185704274702172
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	386	792	1062	109	15	9043.943007406251	9043.826910214839	7474	gi|16767149|ref|NP_462764.1| F1-F0-type proton-ATPase subunit beta [Salmonella typhimurium LT2]	50308.82936306518	1	85	.MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQQQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATL.G	0	8.0	7.0	0.01945066014004886	1.8672633734446904	0.05182072829131653
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	820	1238	1656	36	7	6068.330193910156	6068.330193910156	86	gi|16763433|ref|NP_459048.1| 30S ribosomal subunit protein S20 [Salmonella typhimurium LT2]	9649.330160336915	2	55	M.ANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAALKA(FNEMQ)[20.06].P	1	6.0	6.0	0.04074556969030557	1.870608496696016	0.05178446466060182
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	871	1291	1727	128	17	8948.89759061719	8948.801199155268	840	gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2]	48739.14178295654	373	454	L.AGAVLAMVWLAVASTMKEPPYVSSLRVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQLISKG.	0	7.0	5.0	0.08506151244102708	1.8713532737025957	0.05174825174825175
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1996	3155	4212	56	18	13355.740122492187	13355.90869732422	3778	gi|16765294|ref|NP_460909.1| sigma 28 [Salmonella typhimurium LT2]	27456.151739316407	2	119	M.NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETE.V	0	4.0	4.0	0.015305949876845158	1.9438556343593352	0.053109713487071976
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1174	1654	2211	145	20	12217.854757546875	12217.72862835449	2848	gi|16764819|ref|NP_460434.1| outer membrane protein N precursor [Salmonella typhimurium LT2]	41695.435972409665	272	377	G.NDDCRSCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATYYFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF.	0	4.0	4.0	0.1333769966756058	2.000654950134087	0.05307262569832402
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	315	715	959	89	15	8518.673023839843	8518.619611936036	3360	gi|16765079|ref|NP_460694.1| putative septation protein [Salmonella typhimurium LT2]	20806.436227994385	1	73	.MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAIVLIYSWVRYRKIEKMALITFVLVAVFGGLTLFFHNDEF.I	0	4.0	4.0	0.03972980743773772	2.1851394090755747	0.055826936496859735
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	156	543	730	70	8	5240.6110928125	5240.606863217774	4700	gi|16765755|ref|NP_461370.1| pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase [Salmonella typhimurium LT2]	31233.06537838501	59	105	L.FSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSA.D	0	5.0	5.0	6.641577909208883E-4	2.3524900253857868	0.056485355648535567
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	454	861	1154	86	14	7824.973581289062	7824.929563718263	828	gi|16763810|ref|NP_459425.1| 2-aminoethylphosphonate transport protein [Salmonella typhimurium LT2]	27749.213274198	173	239	H.YNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH.	0	4.0	4.0	0.05817072586985238	2.4431704865337998	0.05853658536585366
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	571	978	1310	49	6	4958.548331234375	4958.56438274902	5730	gi|16766275|ref|NP_461890.1| putative serine transport protein [Salmonella typhimurium LT2]	46942.99149151367	244	287	A.EKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPADLAAAKEQNIS.I	0	5.0	5.0	7.339322459949907E-4	2.449361611978724	0.0584958217270195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1431	1977	2642	35	26	19647.180766835943	19647.2003042273	2640	gi|16764715|ref|NP_460330.1| putative oxidase [Salmonella typhimurium LT2]	114144.6244146399	578	744	E.CNGNGLCFNFDAKSPMCPSMKISLNRIHSPKGRATLVREWLRLLADRGVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQCPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVRNLAK.K	0	5.0	5.0	3.329293246488602E-4	2.457169279262005	0.05845511482254697
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1512	2101	2807	45	20	15617.129973125	15617.129973125	132	gi|16763457|ref|NP_459072.1| carbamoyl-phosphate synthase large subunit [Salmonella typhimurium LT2]	118862.74195690674	340	1075	I.TGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELK(DAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSIDRDKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIRRSALQYKVHYDTTL)[-66009.90]NGGFATTMALNADATEKVTSVQEMHAQIKKS.	1	14.0	11.0	2.0326077217227155E-4	2.4601241192476446	0.0584144645340751
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1684	2316	3094	85	18	17714.62526989844	17714.889677243653	7710	gi|16767268|ref|NP_462883.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	19201.697485166016	15	171	G.KQRRKTREELNQEARDRKRLKKHRGHAPGSRAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLLETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQEDMMRLLRGGN.	0	4.0	4.0	0.08024851184517014	2.6482008908906147	0.06323835997220292
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	362	764	1024	67	17	9043.945667320311	9043.848837094733	3296	gi|16765047|ref|NP_460662.1| putative diguanylate cyclase/phosphodiesterase [Salmonella typhimurium LT2]	75088.02853985352	582	660	Q.AFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAFLTKNGVNERQGFLFAKPMPAVSFERWYKRYQTKKMR.	0	4.0	4.0	0.10242824252521857	2.663134305655683	0.06319444444444444
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	389	795	1066	92	10	7881.955297007812	7881.87919064087	4878	gi|16765846|ref|NP_461461.1| nucleoside diphosphate kinase [Salmonella typhimurium LT2]	15568.856470303956	71	143	G.PIVVSVLESENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRTR.	0	6.0	5.0	0.08460254846159052	2.7072815507708965	0.06315058986814712
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1507	2090	2792	13	12	9314.993822140626	9314.997137265625	1988	gi|16764388|ref|NP_460003.1| lysozyme [Phage Gifsy-2]	16407.42389126343	65	149	N.TGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFL.S	0	5.0	4.0	5.1751719581825E-4	2.788782559931703	0.0638002773925104
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1164	1642	2195	11	11	10929.697908925784	10929.697908925784	3624	gi|16765215|ref|NP_460830.1| putative exported protein [Salmonella typhimurium LT2]	12834.850965695801	20	117	A.APQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGK(TRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS)[-.96].	1	4.0	4.0	0.11195829025886489	2.8688505417849743	0.06514206514206514
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1836	2620	3499	30	10	12175.534931421877	12175.454946713873	4888	gi|16765851|ref|NP_461466.1| penicillin-binding protein 1c [Salmonella typhimurium LT2]	85279.63439007325	156	265	D.ILTLYLNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPARAEAARNKVLDRMAAQGVWPAETVRESREEPVWLAPRQMPQLAPLFARMMLS.K	0	10.0	6.0	4.63043449426236E-4	2.8941435301554477	0.06578947368421052
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	980	1410	1886	44	20	14442.72839765625	14442.739038663327	7854	gi|16767340|ref|NP_462955.1| putative ABC-type aldose transport system ATPase component [Salmonella typhimurium LT2]	55938.046255307614	131	261	C.QLDPASAAGTLDVADRQIVEIMRGLMRDSRILILDEPTASLTPAETDRLFTRLQELLKKGVGIVFISHKLPEIRQLAHCVSVMRDGKIALFGKTHDLSTDEIIQAITPATQGVSLSANQKLWLELPGSRPQ.N	0	5.0	5.0	4.3085019871172804E-4	2.924839987056301	0.06643598615916955
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	504	911	1220	121	13	7709.886936183593	7709.913183408204	7202	gi|16767011|ref|NP_462626.1| formamidopyrimidine DNA glycosylase [Salmonella typhimurium LT2]	30555.94174786133	203	269	I.KAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRHCQK.	0	6.0	5.0	0.06680613757832354	3.0062761910245595	0.06639004149377593
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	800	1217	1628	62	13	9714.282170878909	9714.147031979981	4784	gi|16765797|ref|NP_461412.1| putative pyrophosphohydrolase [Salmonella typhimurium LT2]	21910.141279416504	1	83	.(M)[42.01]SQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDRGNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLIET.C	0	4.0	4.0	0.03504602015031908	3.013957732927441	0.0663441603317208
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	483	890	1192	50	14	7977.932702140624	7977.955351071774	7950	gi|16767388|ref|NP_463003.1| argininosuccinate lyase [Salmonella typhimurium LT2]	50849.03147335571	274	345	V.TSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALV.L	0	6.0	5.0	6.413501512051924E-4	3.076299771105161	0.06698895027624309
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	290	690	926	69	7	4538.440489890625	4538.465489890625	3256	gi|16765027|ref|NP_460642.1| putative inner membrane protein [Salmonella typhimurium LT2]	39372.580057340085	2	135	M.SEPL(KPRIDFAEPLKEEPTSAFKAQQTFSEAESRTFAPAAIDERPEDEGAAEAAVDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDW)[-10115.99]VALGGCAAGALIVGAGVGSVVTEWRRLWRLRQRAHE.R	1	8.0	8.0	7.091708124203467E-4	3.0813174884720738	0.06694271911663216
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1693	2334	3118	20	14	11253.867143406249	11253.913809018552	7116	gi|16766968|ref|NP_462583.1| selenocysteine synthase [Salmonella typhimurium LT2]	51111.632959561764	76	183	A.AQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGA.F	0	4.0	4.0	5.14277210544807E-4	3.1006989237995457	0.06689655172413793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	768	1185	1586	90	17	12995.4777243125	12995.487997250983	2898	gi|16764844|ref|NP_460459.1| putative dimethyl sulphoxide reductase chain A1 [Salmonella typhimurium LT2]	90761.74472637696	1	116	.(M)[42.01]MPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAAVQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACLRGRSIRRRINHPDR.L	0	5.0	5.0	0.028140974104916942	3.1517890997506974	0.06753962784286699
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	583	991	1327	164	10	9849.823079882815	9849.909578519288	3046	gi|16764919|ref|NP_460534.1| putative transcriptional regulator [Salmonella typhimurium LT2]	21589.007974820557	107	192	I.LADRDPHIRDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATDIAWRLIALVCGLDGMYVLGIPEMADPAFKFHLDRMITLELFA.	0	9.0	7.0	0.1020216693385887	3.1626717494962495	0.0674931129476584
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1688	2320	3099	79	26	17716.542281625007	17716.364401059567	4206	gi|16765509|ref|NP_461124.1| putative sugar transporter [Salmonella typhimurium LT2]	48683.99262447876	283	452	N.HRGIDLQQASWVTAAFQVGGTLGALLLGVLMDRLNPFRVLAVSYALGAVCIVMIGLSENGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAIGRCGAIVGSLSGGMMMALNFSFDTLFFVIAIPAAISAVMLTLLTVVVRLSISVPDDLPRASVVNE.	0	4.0	4.0	0.08241330355158821	3.3789454456151167	0.07019958706125258
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1522	2111	2820	59	16	15617.092670875	15617.111921506345	458	gi|16763622|ref|NP_459237.1| acetylCoA carboxylase alpha subunit [Salmonella typhimurium LT2]	35435.30261059326	175	319	E.RGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA.	0	5.0	4.0	0.09388624893165652	3.379904961539635	0.07015130674002751
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	635	1044	1398	135	18	11526.334669507814	11526.245409207762	6610	gi|16766714|ref|NP_462329.1| 50S ribosomal subunit protein L6 [Salmonella typhimurium LT2]	18905.156564908448	72	177	L.LNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVVNLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK.	0	4.0	4.0	0.18147648364944308	3.4480531893394186	0.07216494845360824
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1114	1574	2104	18	10	10088.130522	10088.070020871579	7946	gi|16767386|ref|NP_463001.1| N-acetyl-gamma-glutamylphosphate reductase [Salmonella typhimurium LT2]	36268.6537000708	86	175	S.HDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGCYPTAAQLSLKPLIDGGLLDLT.Q	0	8.0	5.0	6.15396969401398E-4	3.4679501323535784	0.07211538461538461
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1374	1906	2547	80	23	17504.538363753913	17504.34740276855	3476	gi|16765139|ref|NP_460754.1| putative inner membrane protein [Salmonella typhimurium LT2]	27650.717657285157	2	156	M.(S)[42.01]GYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKILAVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFITPLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLE.S	0	4.0	4.0	0.039051195842524936	3.4755564299847195	0.0720658888126287
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	269	669	898	75	7	4506.4671082187515	4506.449835019532	1494	gi|16764145|ref|NP_459760.1| molybdate transporter [Salmonella typhimurium LT2]	27503.34425945801	110	151	L.VVVAPKASEQKPFTIDNKTDWIRLLNGGRLAVGDPQHVPAGI.Y	0	7.0	6.0	0.001175959848631255	3.6988524572709265	0.0747599451303155
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	502	909	1218	66	12	7709.884751734375	7709.84344311279	7776	gi|16767301|ref|NP_462916.1| formate dehydrogenase-O beta subunit [Salmonella typhimurium LT2]	33946.148679929196	233	300	D.KPNLYHGLPENPEISETVKFWKGVWKPLAAFGFAATFAASVFHYVGVGPNRAEEEDDNLHEEKDEVRK.	0	4.0	4.0	0.09392823832774282	3.7571295331097128	0.07470870459218643
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	849	1269	1698	27	13	8948.887021765626	8948.798979001464	6640	gi|16766729|ref|NP_462344.1| 50S ribosomal subunit protein L3 [Salmonella typhimurium LT2]	22290.807253079834	4	86	G.LVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAE.G	0	6.0	4.0	7.219948560130288E-4	3.793106305616236	0.07465753424657534
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	273	673	903	75	8	4506.4652033125	4506.455923276368	8138	gi|16767482|ref|NP_463097.1| periplasmic protein precursor [Salmonella typhimurium LT2]	31860.70844479126	146	186	V.MRLTPALGQQKLYVLVFTTEKDLQQTTTLLDPAKAYAKGVG.N	0	6.0	6.0	0.001217159397138822	3.8284375739483085	0.07529089664613278
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1153	1626	2174	176	21	12761.060921964843	12760.872671323237	1290	gi|16764043|ref|NP_459658.1| apolipoprotein N-acyltransferase [Salmonella typhimurium LT2]	57732.550928311764	1	117	.MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIVSLIGLQALTFNRRPLQSAAIGYCWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLSLYTGLFAGILSRLWP.K	0	6.0	6.0	0.06284771384026859	3.833710544256384	0.07523939808481532
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	727	1142	1528	56	16	9517.3326110625	9517.248327451169	856	gi|16763825|ref|NP_459440.1| muropeptide transporter [Salmonella typhimurium LT2]	53796.69495220703	199	287	T.DTIPSPKSLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGALYGGILMQRLS.L	0	5.0	5.0	7.153678817678075E-4	3.874998200839894	0.07518796992481203
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	95	475	639	184	14	11063.960647859374	11063.967825131842	374	gi|16763580|ref|NP_459195.1| penicillin-binding protein 1B [Salmonella typhimurium LT2]	93922.27541180176	1	94	.MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMPRKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKV.W	0	7.0	7.0	0.049478756583249225	3.9088217700766887	0.07513661202185792
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	993	1423	1903	169	15	14441.772956367186	14441.799364285886	768	gi|16763779|ref|NP_459394.1| branched-chain amino acid transporter [Salmonella typhimurium LT2]	46476.02149410766	309	439	Q.YIPLSYRTLVFILGGFSMVVSNLGLSHLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAFGDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH.	0	5.0	5.0	0.20458751613177664	4.091750322635533	0.07508532423208192
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1530	2121	2834	83	13	9249.082686511721	9248.989763455807	2756	gi|16764773|ref|NP_460388.1| putative transport protein [Salmonella typhimurium LT2]	49649.63062496704	266	353	P.LGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTVTLRKHIALLYNDNPEVVAL.A	0	6.0	6.0	7.676340281235596E-4	4.094170653134064	0.07503410641200546
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	769	1186	1587	68	17	12995.4777243125	12995.59712429566	2676	gi|16764733|ref|NP_460348.1| tetrathionate reductase complex subunit A [Salmonella typhimurium LT2]	111436.55753536744	1	116	.(M)[42.01]ANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRAIDGLLNGTSGKVTRDRIFGNALIPEAQAQTHWQQNPQQTIAMTQCFGCWTQCGIRARVNADGKVIRIAGNPYHPLSQEHPIDS.S	0	5.0	5.0	0.0329670841903136	4.186819692169827	0.07498295841854125
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1459	2015	2692	16	20	15477.128792421872	15477.330480771483	5612	gi|16766217|ref|NP_461832.1| putative permease [Salmonella typhimurium LT2]	43853.649309354245	244	385	L.MIPWSIASFVAIMLTGRYFNRLGPRPLIIVGCLLQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASALWNLNRQISFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYA.V	0	4.0	4.0	5.986943149063978E-4	4.189665531369252	0.07493188010899182
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1589	2203	2943	12	12	11545.316933140626	11545.193723874516	1238	gi|16764017|ref|NP_459632.1| cell elongation-specific transpeptidase [Salmonella typhimurium LT2]	70989.61105175538	58	158	N.RIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTLDALRSVVDLNDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEV.K	0	5.0	4.0	7.049747857155862E-4	4.292323320303706	0.07556160653505786
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	790	1207	1615	98	35	19595.97533222266	19595.693269925534	3154	gi|16764975|ref|NP_460590.1| secreted effector protein [Salmonella typhimurium LT2]	46503.92202587646	238	408	D.LAIFLLGANDYMTLHKDNVIMVVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETADAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHHYSTE.	0	4.0	4.0	0.11301879162844965	4.407732873509536	0.07687074829931972
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	226	624	838	47	4	2839.5046898125	2839.530378537602	2158	gi|16764472|ref|NP_460087.1| suppression of copper sensitivity protein [Salmonella typhimurium LT2]	69022.01381130738	38	62	S.IRLRADTSANGETRLLLDVKLENGW.K	0	4.0	4.0	0.0021360981078061814	4.5433071748406775	0.07681849082256968
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	237	635	852	64	11	6307.635282425781	6307.595739560551	1768	gi|16764280|ref|NP_459895.1| putative minor tail protein [Phage Fels-1]	113533.37662334961	694	749	Q.LLALQQRISDLSGKKLTADEKSVLAHKTELVQALTLLDLKQQELQRQSALNDLKKK.A	0	4.0	4.0	0.0011202161398284865	4.592235406826316	0.078125
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	572	979	1311	40	6	4958.548331234375	4958.490522580571	1354	gi|16764075|ref|NP_459690.1| high-affinity potassium transport system chain B [Salmonella typhimurium LT2]	72266.76664944214	490	537	D.FLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNS.G	0	4.0	4.0	0.0014005258641997247	4.673993147287803	0.07942973523421588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1561	2154	2878	13	12	10770.601981843753	10770.465730863034	904	gi|16763848|ref|NP_459463.1| hypothetical protein STM0468 [Salmonella typhimurium LT2]	58085.554556088864	81	174	L.AMRRVSYSFRYVQEVLYLKNSIPVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSDSYIVMIDPASFIDVIPFGAWPIDV.A	0	5.0	4.0	8.247894605687428E-4	4.851014984643637	0.0814111261872456
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1159	1632	2182	68	18	12859.993928812502	12859.901811795658	6498	gi|16766659|ref|NP_462274.1| putative inner membrane protein [Salmonella typhimurium LT2]	74339.38910885376	1	116	.(M)[42.01]GIFSIANQHIRFAVKLACAIVLALFIGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALIIIISMIRAPLLMILVCCVWAGFCTWISSLVRIE.N	0	5.0	4.0	0.060627164057624694	4.9108002886676	0.08135593220338982
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2006	3166	4227	128	21	13355.682588925782	13355.768308835452	4886	gi|16765850|ref|NP_461465.1| putative anaerobic dimethylsulfoxide reductase [Salmonella typhimurium LT2]	89156.96390362305	1	120	.MGFYLTSRIMKNIKSQGNGEQPAISRRHFIQASSALIALPFVSSPATAQARAVTATENRPAEKVVQTCSTFDCGGKCDIRAHVSDGIVTRISTRPDNALDAQMPVMRACVRGRAYRKFVY.H	0	6.0	6.0	0.03734203654454235	5.003832896968675	0.08333333333333333
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1664	2291	3060	13	10	12106.053751250003	12105.980978208005	2128	gi|16764457|ref|NP_460072.1| 4-hydroxyphenylacetate catabolism [Salmonella typhimurium LT2]	59349.18441601318	260	362	R.FDENDAILVMDKVLIPWENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTVEFRGVQADLGEVVAWRNMFWALSDSMCSEATP.W	0	5.0	4.0	8.405784693014194E-4	5.216065544276453	0.08598510494245092
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1385	1922	2568	19	20	15457.092173328125	15457.146330075688	7990	gi|16767408|ref|NP_463023.1| RNA polymerase beta prime subunit [Salmonella typhimurium LT2]	155992.24630947632	1071	1213	G.GKDLRPALKIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDG.P	0	6.0	4.0	8.005385371398206E-4	5.56361406878128	0.08592692828146144
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1450	2003	2676	20	16	15291.573233624998	15291.574300961918	7292	gi|16767057|ref|NP_462672.1| putative transcriptional regulator [Salmonella typhimurium LT2]	105971.99165554566	89	226	E.VRSVADVLPHEEHYAPDDPFTSLIGYDRSLRDAVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACEQASGAIPPLVYFNCAEYAHNPELLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLDEVHRLSYE.G	0	5.0	5.0	8.099930692834834E-4	5.622854130826932	0.0872210953346856
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	393	799	1071	59	11	7881.988670421874	7882.007505612797	8196	gi|16767511|ref|NP_463126.1| putative inner membrane protein [Salmonella typhimurium LT2]	594547.7961179785	2102	2174	T.DKAGNKTTQQLDFIIDTLLSEPTIVLDSTDDSGTKGDHLTNVNKPTFLLGNIDADARYVTVEVQHGGTKEVLT.A	0	6.0	6.0	0.001170173982752308	5.631937517658432	0.08783783783783784
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	803	1220	1632	23	8	10620.479264375	10620.35539455933	2972	gi|16764883|ref|NP_460498.1| putative hydrogenase-1 large subunit [Salmonella typhimurium LT2]	67217.92457027955	42	135	N.VITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHALDWVDVV.A	0	4.0	4.0	9.843561235129846E-4	5.7579896668628585	0.08777852802160702
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1860	2658	3550	15	9	12159.522318960937	12159.461012082522	3760	gi|16765284|ref|NP_460899.1| excinuclease ABC subunit C [Salmonella typhimurium LT2]	68390.84030361695	482	591	E.LDVPWDKHRPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIA.K	0	6.0	4.0	9.277118273928275E-4	5.80192372475911	0.08771929824561403
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1333	1843	2463	51	18	14918.076465820315	14917.935770230719	7464	gi|16767144|ref|NP_462759.1| putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component [Salmonella typhimurium LT2]	67643.49490566773	134	263	S.LCPGIPLRRSEQHLVRQIFSGLTRINEEKGEVEADLAHHWRQIDPLRWRFYLRPAVLWHDGQELTIDAVIASLTRSAKLPLFSHLQTIQATGPLSLEITLAHPDNRLPLLLSHIDAMILPPDHTQRADFP.A	0	7.0	6.0	8.687952158836299E-4	5.978544760877339	0.08833445718138908
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	158	545	732	57	6	5240.611606726563	5240.606863217774	4700	gi|16765755|ref|NP_461370.1| pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase [Salmonella typhimurium LT2]	31233.06537838501	59	105	L.FSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYMGSA.D	0	4.0	4.0	0.0017232365160045526	6.103815645466317	0.0889487870619946
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	458	865	1159	80	14	7825.963937734375	7825.860151486817	8280	gi|16767553|ref|NP_463168.1| response regulator [Salmonella typhimurium LT2]	27887.021524625245	1	68	.MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIFNSENHIDLILLDIYMQQENGLDLL.P	0	4.0	4.0	0.05938984051372515	6.235933253941141	0.08956228956228957
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1163	1641	2194	36	11	10929.697908925784	10929.622908925783	8592	gi|16767714|ref|NP_463329.1| ornithine carbamoyltransferase 1 [Salmonella typhimurium LT2]	36945.519857602536	35	132	K.KNGKEEQKLVGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGSSGSQIGHKESIKDTARVLGRMFDGIQYRGYGQEIVETLAEYSGV(PVWNGLTDE)[15.14].Y	1	11.0	8.0	0.001068066884940062	6.312875858388484	0.0901749663526245
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	976	1403	1876	41	22	16007.58115784375	16007.754930692143	7398	gi|16767111|ref|NP_462726.1| sensor kinase [Salmonella typhimurium LT2]	100724.38930721802	237	376	K.LNQLVKILSRRQQRIEDPTVRAQIADALETINQYTTLVTLFRKENAIRDQLQTLMANNLFQFTRFSTEVSQLVNAIEKRNEAGLARLTHASQRGQIGLVILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDI.D	0	5.0	5.0	8.942174487310907E-4	6.313848915115525	0.09011432414256892
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	433	840	1126	101	11	7825.921861925783	7825.972891049802	8784	gi|16767809|ref|NP_463424.1| thymidine phosphorylase [Salmonella typhimurium LT2]	47085.88679333252	356	430	D.TRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDSIDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPAS.T	0	9.0	8.0	0.0013110858176059283	6.32273698327317	0.09005376344086022
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1386	1923	2570	49	21	15458.080136585937	15457.944868283692	5252	gi|16766034|ref|NP_461649.1| capsid scaffold-like protein [Salmonella typhimurium LT2]	30595.470934110108	2	144	M.TVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALINLEHIKSYLPESTFNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKLFTSMEVSTKFADTGKAYLVGLGATDDPASLGTEMLAFSASAA.H	0	4.0	4.0	0.04993279635166857	6.391397933013577	0.08999328408327736
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1597	2211	2954	10	10	9189.661731453127	9189.65755291504	4428	gi|16765619|ref|NP_461234.1| putative transcriptional regulator [Salmonella typhimurium LT2]	29496.48537273926	56	135	I.SLDHQDNYCLWTKLVELSGHALSKMDLRELARPRLTQLMDETGLLCHLGIIDHENAYYILKVESSSTISVRSHEGKSLSL.Y	0	4.0	4.0	0.0012188331418975205	6.514548475123881	0.09060402684563758
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	397	803	1076	37	10	7880.964696421875	7880.878519254148	6946	gi|16766883|ref|NP_462498.1| glutathione oxidoreductase [Salmonella typhimurium LT2]	49003.813970761716	6	78	Y.DYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINQ.F	0	5.0	5.0	0.001370653205743153	6.597090971399336	0.09054325955734406
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	357	759	1018	47	14	9044.9351466875	9044.852682309569	4474	gi|16765642|ref|NP_461257.1| hypothetical protein STM2315 [Salmonella typhimurium LT2]	64714.14790936035	197	277	P.FAVKYELAPSPWNAQRTLLKVDVQARDMQTRDLPPANLVFLIDTSGSMQPAERLPLIRSALKLLVNDLRAQDNITIVTYAG.G	0	5.0	5.0	0.001260348219468612	6.598273715694191	0.09048257372654156
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1274	1765	2359	13	14	14043.589746203124	14043.589746203124	1690	gi|16764245|ref|NP_459860.1| putative inner membrane protein [Salmonella typhimurium LT2]	48794.785722928464	318	447	A.VDVAALLPFSPNAATLGFVFCTFGTIFSMGILLLIHSPIMVLPGFVPLFFSGGPIGVLANRMGGYRSVIICTFLLGIIQTFGTVWAIPLTGLAKEGVGWTGIFDWATLWPAICELLKFIASTFHLGPY(SI)[-29.87].	1	4.0	4.0	0.2284682451219182	6.6861984567922	0.09109176155391828
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1536	2127	2842	31	7	10088.907721093748	10088.907721093748	2772	gi|16764781|ref|NP_460396.1| putative glutaredoxin protein [Salmonella typhimurium LT2]	13070.567018704834	27	115	K.(LPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW)[-12.02]PTFPQLWVDGELVG(GCDIVIEMYQRGELQQLIKETAAKYKTQEPDAE)[.97].	2	11.0	10.0	0.002986254173756562	6.91356505810943	0.09370816599732262
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1799	2537	3388	12	8	8794.4827589375	8794.494077878418	6322	gi|16766571|ref|NP_462186.1| putative lipid carrier protein [Salmonella typhimurium LT2]	19792.296442227784	60	136	S.IHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIE.L	0	4.0	4.0	0.001361799708810918	7.005215155348474	0.09431438127090301
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1953	3079	4111	12	11	12201.508124171878	12201.42598934692	400	gi|16763593|ref|NP_459208.1| putative chlorine transport protein [Salmonella typhimurium LT2]	50676.2064268164	350	467	S.SGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILARTLAKQDAEQAEKNQNA.P	0	4.0	4.0	0.001165436583248871	7.348395980847183	0.09558823529411764
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1732	2389	3191	25	16	11782.2123116875	11782.223505216061	612	gi|16763700|ref|NP_459315.1| putative hydrolase [Salmonella typhimurium LT2]	47414.72976131958	222	328	R.GIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMH.D	0	4.0	4.0	0.0012004505918148532	7.392553965824452	0.09552438209752839
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1892	2737	3655	57	16	12201.5598789375	12201.486036496586	4388	gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella typhimurium LT2]	97175.22016354126	660	775	A.LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIK.V	0	9.0	6.0	0.0012156366619953402	7.590476732610348	0.09612817089452604
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	494	901	1207	58	10	7977.9554584843745	7978.008501248784	7108	gi|16766964|ref|NP_462579.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	74870.05223675293	148	216	V.AFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQR.G	0	6.0	6.0	0.0016184273300009282	7.878786902119172	0.09606404269513008
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	846	1265	1692	14	14	10076.506822507814	10076.437471585692	1700	gi|16764250|ref|NP_459865.1| arginine transport system component [Salmonella typhimurium LT2]	26508.288938718262	10	101	S.AAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIAWIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDV.S	0	4.0	4.0	0.001415295962211409	7.979109289056197	0.09666666666666666
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1769	2470	3299	100	25	18696.97589433203	18696.75744076294	2310	gi|16764550|ref|NP_460165.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Salmonella typhimurium LT2]	25586.172670560303	1	177	.MSFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIGFSKSLAREVASRGITVN.V	0	5.0	5.0	0.07240010536676755	8.108811801077966	0.09926715522984676
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	590	998	1336	50	16	8985.9166794375	8985.79895229858	4582	gi|16765696|ref|NP_461311.1| putative aspartate-semialdehyde dehydrogenase [Salmonella typhimurium LT2]	36379.40492077392	88	174	T.NAGCLVIDSSGLFALEPDVPLVVPEVNPYVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIAVTSMLSASAQGKKAVDALAG.Q	0	5.0	5.0	0.0015926157797139966	8.355970465519928	0.09986684420772303
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1366	1897	2535	35	21	17505.404234113288	17505.30851955932	4790	gi|16765800|ref|NP_461415.1| sensory histidine kinase [Salmonella typhimurium LT2]	63929.04719372314	332	485	P.LLNSVSTMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRAIPEDNAGAQSIMADFSRALNDAYRQLRELLTTFRLTLQQADLPSALHEMLEDLQSQTPAKLTLDCRLPTLALDAQMQVHLLQIVREAVLNAIKHA.N	0	5.0	4.0	0.0011582161062816826	8.377291451333459	0.0998003992015968
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1021	1453	1943	129	14	8113.320960804688	8113.4038373999	3934	gi|16765373|ref|NP_460988.1| propanediol dehydratase reactivation protein [Salmonella typhimurium LT2]	64586.27412243408	2	78	M.RYIAGIDIGNSSTEVALARQDETGALTITHSALAETTGIKGTLRNVFGIQEALALVAKRAGINVRDISLIRINEATP.V	0	4.0	4.0	0.09265669193574817	8.61707235002458	0.09973404255319149
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1568	2162	2888	17	12	10770.530204500003	10770.623274045407	2176	gi|16764482|ref|NP_460097.1| major sodium/proline symporter [Salmonella typhimurium LT2]	54567.64023800415	250	348	F.GQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNNNPALAGAVNQNSERVFIELAQILFNPWIAGVLLSAILAAVMSTLSCQLLV.C	0	6.0	4.0	0.0015524412631282016	9.130628727698355	0.10299003322259136
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1665	2292	3062	17	11	12106.094693023439	12106.147352414557	2028	gi|16764408|ref|NP_460023.1| host specificity protein J [Phage Gifsy-2]	90287.34394283814	32	144	S.EGPIVGPVNGLQSVLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRS.G	0	4.0	4.0	0.0015048127359530892	9.430230999704806	0.10358565737051793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1912	2784	3718	24	10	12215.486111296876	12215.393522458493	3106	gi|16764950|ref|NP_460565.1| putative benzoate membrane transport protein [Salmonella typhimurium LT2]	40773.909116940915	176	290	V.MGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPLFLVTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQSPDAHPDPTRRWLA.A	0	5.0	5.0	0.0015244741871352741	9.513836115976957	0.1041804910418049
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	758	1174	1571	113	20	10277.707709203123	10277.614855008544	4178	gi|16765494|ref|NP_461109.1| putative ABC-type proline/glycine betaine transport system permease component [Salmonella typhimurium LT2]	41623.97608776611	204	301	G.VWCYFSASRQGPVFTVLNVIQTIPSVALFGLLIAPLAGLVKQFPWLAAFGVAGTGMTPALIALVLYALLPLVRGVVAGLNQVPRDVLESARAMGMSSG.Q	0	8.0	6.0	0.0016862088450742743	9.657505345487248	0.10411140583554376
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	229	627	842	71	7	5124.548037277344	5124.569505887452	326	gi|16763556|ref|NP_459171.1| spermidine synthase/putrescine aminopropyltransferase [Salmonella typhimurium LT2]	32416.59283276123	82	128	V.LIIGGGDGAMLREVTRHKNVETITMVEIDAGVVSFCRQYLPNHNAGS.Y	0	4.0	4.0	0.002742776413766307	9.752933159688073	0.10470510271703115
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1988	3146	4200	24	13	9044.934976398437	9044.874976398438	1314	gi|16764055|ref|NP_459670.1| N-acetylglucosamine-specific enzyme IIABC [Salmonella typhimurium LT2]	68730.95855160279	485	650	P.APAAKPQAVPNAVTIAELVSPITGEVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAA(GTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALNGQGFKRLVEEGAEVTAGQPVLELDLDFLNANARSMISPVVCSNSDDF)[-8236.11]SALVIKADGHVVAGKTPLYEIKSK.	1	6.0	6.0	0.0032469071800089173	10.127544164300367	0.10529801324503311
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	507	914	1224	71	10	7709.890514671874	7709.916330533445	6334	gi|16766577|ref|NP_462192.1| tryptophan-specific transport protein [Salmonella typhimurium LT2]	44778.789446072995	2	73	M.ATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGS.S	0	4.0	4.0	0.07290529138277617	10.206740793588663	0.10522832561217736
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1703	2348	3136	22	11	11232.8504001875	11232.691442685551	8486	gi|16767656|ref|NP_463271.1| putative periplasmic protein [Salmonella typhimurium LT2]	136366.22488995118	645	745	V.QGEPVSGQLSLTGSFDREAARWKGTLSDTRFQTPVGPWSLTRAIALDYRNKEQKISIGPHCWLNPNAELCIPQTIDAGAAGRAVVNLNRFDLAMLKPFMPD.T	0	4.0	4.0	0.0016986797127237668	10.250091481234605	0.10515873015873016
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1406	1948	2603	92	57	34098.30868592579	34098.30225201172	2972	gi|16764883|ref|NP_460498.1| putative hydrogenase-1 large subunit [Salmonella typhimurium LT2]	67217.92457027955	2	306	M.AYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRNMMQATLHVHDHLVHFYHLHALDWVDVVAALKADPHQTSAIAQSLSAWPLSSPGYFRDLQNRLKRFIESGQLGPFRNGYWGHPAMKLPPEANLLAVAHYLEALDFQKEIVKIHTVFGGKNPHPNWLVGGVPCAINLDETGAVGAVNMERLNLVSSIIQKARQFCEQVYLPDVLLIASYYKDWAKIGGGLSSMNLLAYGE.F	0	4.0	4.0	0.09860432282084007	10.254849573367368	0.10508922670191673
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	272	672	902	75	7	4506.4671082187515	4506.482108218751	7116	gi|16766968|ref|NP_462583.1| selenocysteine synthase [Salmonella typhimurium LT2]	51111.632959561764	1	338	.M(TSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSLVSFSGDKLL)[-32237.66]GGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATL.R	1	9.0	9.0	0.0012233704809190317	10.383169003914752	0.10634081902245707
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1999	3158	4216	106	32	22491.6608765	22491.706728177494	1346	gi|16764071|ref|NP_459686.1| ornithine decarboxylase isozyme [Salmonella typhimurium LT2]	83252.50953121705	537	732	L.NSILFLLTPAEDMAKLQQLVALLARFEKLLEADAPLAEVLPSIYKQHEARYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKSHFPKVSMNPQEANYAYLRGEVELVRLPEAEGRIAAEGALPYPPGVLCVVPGEIWGGSVLRYFSALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQRSLLKEEKL.	0	4.0	4.0	0.17354821313186777	10.412892787912066	0.10627062706270628
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	962	1388	1856	30	21	16007.675164800781	16007.588449674075	2814	gi|16764802|ref|NP_460417.1| putative NADH-quinone reductase [Salmonella typhimurium LT2]	24416.262289243165	73	223	Y.VMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVP.A	0	4.0	4.0	0.0014996589232398304	10.588719923241683	0.10686015831134564
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	509	916	1227	63	11	7709.892821191405	7709.806665616452	2384	gi|16764587|ref|NP_460202.1| adenylosuccinate lyase [Salmonella typhimurium LT2]	51628.67388744873	243	308	N.PYTTQIEPHDYIAELFDCIARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFE.N	0	5.0	5.0	0.002267978162414438	10.654905085022587	0.10678971654581411
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	108	493	663	71	7	4568.483154464844	4568.436727719723	4650	gi|16765730|ref|NP_461345.1| putative chloride channel permease [Salmonella typhimurium LT2]	43126.637407498776	31	71	A.MKVASVFQQFLWQRLPTSIGIAYDSPFWIVGMLTLTGIVVG.L	0	7.0	6.0	0.003399210397451814	10.670141293320507	0.1067193675889328
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	559	966	1294	47	6	4628.4342180859385	4628.417196469723	7402	gi|16767113|ref|NP_462728.1| 2-oxo-3-deoxygalactonate 6-phosphate aldolase/galactonate dehydratase [Salmonella typhimurium LT2]	42579.669676022946	157	199	N.SRAVDAAVNTVAQIREAFGSEIEFGLDFHGRVSAPMAKVLIKE.L	0	4.0	4.0	0.0033413026654618666	10.736228387446031	0.10730743910467412
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	829	1247	1668	18	9	10657.620668015625	10657.592954831547	3174	gi|16764985|ref|NP_460600.1| ATP-dependent helicase [Salmonella typhimurium LT2]	149189.22620983643	161	253	F.SDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRT.Y	0	5.0	4.0	0.0018772990010651304	10.966148629593533	0.10789473684210527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	275	675	906	75	8	4506.46569159375	4506.485691593751	2560	gi|16764674|ref|NP_460289.1| putative regulatory protein [Salmonella typhimurium LT2]	20484.881208615723	2	178	M.(TYQQAGRIAI)[42.01]LKRVVGWV(IFIPALLSTLISVLKFMYAHSEKQEGINAVMLDFTHVMIDMMRVNTPFLNVFWYNSPTPNFQGSLNIGFWLIFILIFVGLAMQDSGARMSRQSRFLREGVEDQLILEKAKGAEGLTREQIESRIVVPHHTIFLQFFPLYILPVIIIVLGYFFFSLLGF)[-15889.37]M.	1	6.0	6.0	1.1110116790067561	11.122226106762128	0.10848126232741617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	919	1342	1795	54	15	10157.466680593749	10157.566381650387	3712	gi|16765259|ref|NP_460874.1| methyl esterase [Salmonella typhimurium LT2]	37641.57352276367	96	192	R.ALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIAIGASTGGTEAIRHVLQPLPLSSPAVIITQHMP.P	0	5.0	5.0	0.0019978604180081903	11.229469837183462	0.10840998685939553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1445	1998	2670	25	18	15163.590067695313	15163.474542813718	1932	gi|16764362|ref|NP_459977.1| putative diaminopropionate ammonia lyase [Salmonella typhimurium LT2]	44580.18616314453	120	256	V.FVTATDGNHGRGVAWAAEQLGLKAVVYMPKGSSLIRAENIRHHGAECTITDLNYDDAVRLAHRMAQTKGWVLLQDTAWTGYEEIPTWIMQGYMTLAVEAYEQLAETNSPLPTHLILQAGVGSFAGSVMGYFVEKMQE.N	0	4.0	4.0	0.0016328375641977615	11.30419434825497	0.10965200262639527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1490	2062	2755	25	36	27428.457667875005	27428.237436490483	7108	gi|16766964|ref|NP_462579.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	74870.05223675293	29	268	V.VIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGAQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAV.R	0	4.0	4.0	0.0015683648393017612	11.416791113698496	0.11023622047244094
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	274	674	904	75	6	4506.466205507813	4506.413896756589	840	gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2]	48739.14178295654	195	234	L.NRESGMVKGSFSKVLAEPRLLKLNFGIMCLHILLMSTFVA.L	0	5.0	5.0	0.003959597606555646	12.454512161129975	0.11409836065573771
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	672	1087	1455	12	5	4428.058822656251	4428.058822656251	8788	gi|16767811|ref|NP_463426.1| purine-nucleoside phosphorylase [Salmonella typhimurium LT2]	26189.099310117188	154	194	N.(LFS)[4.03]ADLFYSPDGEMFDVMEKYGVLGVEMEAAGIYGVAAEFG.A	1	6.0	5.0	0.0040596421056872615	12.47391444505733	0.11402359108781127
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1998	3157	4215	74	21	13359.703401914063	13359.872106748044	7570	gi|16767197|ref|NP_462812.1| dTDP-glucose 4,6-dehydratase [Salmonella typhimurium LT2]	39778.98072262329	161	279	Y.SASKASSDHLVRAWLRTYGLPTLVTNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYHVVTNGAVGETYNIGGHNERKNLDVVRTICALLEELAPQKPQ.G	0	6.0	6.0	0.0019373058185748922	12.701760997835374	0.114603798297315
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1486	2058	2750	35	36	29091.732322484382	29091.668100552983	5890	gi|16766354|ref|NP_461969.1| glycine cleavage complex protein P [Salmonella typhimurium LT2]	104961.94153042359	653	920	T.YPSTHGVYEETIREVCEVVHQFGGQVYLDGANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVVQIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKDAYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESEGKAELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHPYSREVA.V	0	4.0	4.0	0.0017911589610681644	12.754573972289233	0.11452879581151833
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	444	851	1140	40	13	8094.020568582031	8094.048227506105	1388	gi|16764092|ref|NP_459707.1| putative ABC transporter permease protein [Salmonella typhimurium LT2]	29783.603594022217	25	97	G.RYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQS.D	0	5.0	4.0	0.0029135817941619902	14.124987776306074	0.11772400261608895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	75	449	604	35	11	6409.35910134375	6409.35910134375	2880	gi|16764835|ref|NP_460450.1| putative chloride channel protein [Salmonella typhimurium LT2]	45779.39550610107	1	429	.MHRLHAYPDLRAMFRRLLI(ATLIGILAALAVAAFRHAMQLLEWIFLSNDTGSLVNAAEGLSPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQTDGQFDVGASLVKSLASLLVVVSGSAIGREGAMILLAALAASSFARRFTPREEWKLWIASGAAAGMAGAYHAPLAGSLFIAEILFGTLMLASLGPVVVSAVVALLTTHVLNGSDSLLYTVHLTVDLHAREYVMIVSTGLVAGLCGPLLMWLMTASHNSFLRLKLSPPWQLALGGLIVGLLSLLTPTVWGNGYSVVQSFLLSPPLFSLIGGIFVCKILAVLASSGSGAPGGVFTPTLFVGLSIGMFLGRIWGFWLPGSDEIAILLGLAGMATLLAATTHAPIMSTLMICEMTGEY)[-39370.04]QLLPGLLIACVVASVLSRTLRHDSIYRQHAAEH.	1	5.0	5.0	0.3940426647768391	14.83272824892493	0.11764705882352941
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1613	2236	2987	31	11	8823.825841136722	8823.723425107419	896	gi|16763844|ref|NP_459459.1| putative ammonium transport protein [Salmonella typhimurium LT2]	44661.552282529294	260	346	A.TAAAILGWIIGEWTLRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALVIGVIAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIV.G	0	4.0	4.0	0.003083810308697039	16.06056952546183	0.1201828870019595
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	560	967	1295	33	6	4628.4342180859385	4628.4342180859385	1842	gi|16764317|ref|NP_459932.1| cytochrome-related transporter [Salmonella typhimurium LT2]	63063.683111386716	535	573	R.GLARFDQIIVMDDGHIIERGTHAELLAGQGRYYQFK(Q)[114.09]RL.	1	4.0	4.0	0.8102907400079354	16.491389137454288	0.12140992167101827
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	835	1253	1676	31	15	10406.187342542968	10406.234544949955	1858	gi|16764325|ref|NP_459940.1| anaerobic dimethyl sulfoxide reductase subunit A [Salmonella typhimurium LT2]	91201.27554913086	252	343	G.VTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQPFLDKYCVGYDEKTLPASAPKNGHYKAYILG.Q	0	4.0	4.0	0.002906930284377871	16.75973950379642	0.12133072407045009
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	188	580	779	41	12	6250.605019171875	6250.620019171876	5616	gi|16766219|ref|NP_461834.1| putative permease [Salmonella typhimurium LT2]	52649.9423391394	96	498	K.WLGKRREEWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSL(LTLGVALAGGLVVTHHTVPPTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAALEQYNKEKEQKELPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGAILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVVLINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIK)[-36573.81]DKLVVKD.	1	6.0	6.0	0.004229420052176644	17.27233289693115	0.12190352020860495
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	510	917	1228	35	10	7709.888073265624	7709.936567502446	2292	gi|16764541|ref|NP_460156.1| RNase E [Salmonella typhimurium LT2]	119614.23135586304	865	938	A.LPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQTVAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPV.A	0	4.0	4.0	0.003977983857105284	18.688393951884898	0.1244299674267101
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	228	626	840	70	6	5124.5506135703135	5124.626917081303	3014	gi|16764903|ref|NP_460518.1| putative glycosyl hydrolase [Salmonella typhimurium LT2]	95197.72521038575	261	306	K.AYLARLRQEVGPACYITVEKILAKGEQLPDDWPVSGTTGYEFIASL.A	0	5.0	4.0	0.005827164527047135	20.260022502491505	0.12630208333333334
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1995	3153	4210	107	44	29380.17257164063	29380.59938641113	7436	gi|39546377|ref|NP_462745.2| putative reverse transcriptase [Salmonella typhimurium LT2]	36219.22737331909	1	252	.MDILQHISDLLLTKKSEIISFSLTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDKLPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLTADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICSKIGVNYTRYADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLTNDNKLSIGRERK.R	0	4.0	4.0	0.16783385581500795	20.30789655361596	0.1262199089134678
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1142	1615	2159	36	14	12761.053321250001	12760.886476712642	114	gi|16763447|ref|NP_459062.1| putative citrate-sodium symporter [Salmonella typhimurium LT2]	47932.553228574216	95	213	V.YAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGIVIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAI.A	0	5.0	4.0	0.003177949131141345	20.371843120757237	0.12613784135240572
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	978	1406	1880	26	20	16007.650885624998	16007.597559171141	4262	gi|16765537|ref|NP_461152.1| proton efflux pump [Salmonella typhimurium LT2]	43077.631185727536	212	356	P.RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRLLMCIAVVAGLCFYVGMLLAHAPATLLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTIRVGWIIA.G	0	4.0	4.0	0.003112499100678798	21.97658056435806	0.1286549707602339
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1980	3136	4187	29	10	6250.642764531251	6250.65276453125	676	gi|16763733|ref|NP_459348.1| putative cation transport ATPase [Salmonella typhimurium LT2]	80415.64563961548	613	675	V.AEVLPEGKVEAIRRLKAAYGQVAF(VGDGINDAPALAESDVGLAIGTGTDVAVESADVVLMSGN)[-44.58].L	1	6.0	6.0	0.0050997157131828195	23.039993312795005	0.12857142857142856
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1930	2860	3819	36	20	15735.439286296876	15735.267404752201	5556	gi|16766188|ref|NP_461803.1| secreted effector protein [Salmonella typhimurium LT2]	74181.61219234986	40	184	T.ATLSGEIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSALNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELSKLSTNLVMQEVM.P	0	4.0	4.0	0.0034038642736929606	23.75603851359085	0.12848799480856588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	313	713	956	62	13	8518.722304843752	8518.642172055661	1598	gi|16764198|ref|NP_459813.1| putative transporter [Salmonella typhimurium LT2]	41362.56236095947	14	88	R.FFQLLIIVGMALSLFVPFAPRAWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQLAMFLVLA.A	0	6.0	5.0	0.004704856745794481	23.78400321346825	0.12840466926070038
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	291	691	927	75	7	4538.440489890625	4538.494039731442	500	gi|16763643|ref|NP_459258.1| transcriptional regulator [Salmonella typhimurium LT2]	50113.81583614868	235	274	V.PKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEM.A	0	4.0	4.0	0.007581385108754408	23.820863421694817	0.12832145171743356
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1928	2855	3812	14	8	7433.9874110625	7433.8824110625	458	gi|16763622|ref|NP_459237.1| acetylCoA carboxylase alpha subunit [Salmonella typhimurium LT2]	35435.30261059326	54	119	K.(IFADLGAWQ)[40.08]VAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLEGRPVMIIGHQ.K	1	5.0	5.0	0.006017345193614997	27.67005986140631	0.13082901554404144
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	872	1292	1728	115	17	8948.89759061719	8948.92941494507	6924	gi|39546371|ref|NP_462487.2| putative ABC-type multidrug transport system ATPase component [Salmonella typhimurium LT2]	100802.84052868409	727	807	L.LLMMIPSMLSALSVVREKELGSMINLYVTPTTRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTLTLAALLY.V	0	7.0	7.0	0.005402096284074411	28.38064458995899	0.1307443365695793
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1991	3149	4204	56	40	25530.11067109376	25529.921270566407	188	gi|16763486|ref|NP_459101.1| RNA polymerase-associated protein [Salmonella typhimurium LT2]	110196.15320797486	241	463	H.DAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKVSGIMGARKSPEDR.A	0	5.0	5.0	0.003936634416664308	29.096379744284338	0.13065976714100905
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	588	996	1334	55	12	8985.913068593753	8985.9193212561	1642	gi|16764220|ref|NP_459835.1| putative dehydrogenase [Salmonella typhimurium LT2]	62449.0402738623	20	104	V.LIVGAGPAGLSAALKLKLQANDAGKELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERGAPIKQPVTQDKLLLLTNEKCI.N	0	4.0	4.0	0.005772003018419878	30.28376918137255	0.1305753070458953
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	189	583	783	20	11	6348.576445535156	6348.546445535157	5696	gi|16766259|ref|NP_461874.1| CTP synthetase [Salmonella typhimurium LT2]	60540.17715282959	198	254	E.LLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMK(DVDSIYKIPGLLKSQ)[-13.92].G	1	5.0	5.0	0.0074264644418591775	30.96505102452144	0.13049095607235142
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	111	496	667	48	8	4568.4788691875	4568.423750119626	1176	gi|16763986|ref|NP_459601.1| alkyl hydroperoxide reductase F52a subunit [Salmonella typhimurium LT2]	56257.14065380615	406	448	N.VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQ.I	0	4.0	4.0	0.009712318689318305	31.268768818020696	0.13040671400903808
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	279	679	911	52	8	4506.4691095625	4506.455709653324	8604	gi|16767720|ref|NP_463335.1| valine tRNA synthetase [Salmonella typhimurium LT2]	108562.72675152344	835	875	V.RRVNDNRSFLQTLARLESITVLPADDKGPVSVTKIIDGAEL.L	0	4.0	4.0	0.009992842607901323	31.43137346231885	0.13096774193548388
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1675	2305	3079	33	24	17715.558298468753	17715.317945676266	4848	gi|16765831|ref|NP_461446.1| IMP dehydrogenase [Salmonella typhimurium LT2]	52201.056299405514	136	299	T.GRDVRFVTDLNQPVSVYMTPKERLVTVREGEAREVVLAKMHEKRVEKALVVDDNFHLLGMITVKDFQKAERKPNSCKDEQGRLRVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATGAGARALAEAGCSAVKVGI.G	0	4.0	4.0	0.004780283341719879	34.74337325326778	0.13088330109606705
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1950	3075	4106	19	8	7267.63022746875	7267.7102274687495	946	gi|16763869|ref|NP_459484.1| ferrochelatase [Salmonella typhimurium LT2]	36119.49387188476	147	210	I.LARKRRIPGISFIRDYADDGAYIDALAKSARESFARHGEPDVLL(LSYHGIPQRYADEGDDYPQR)[-21.98].C	1	6.0	5.0	0.008109789496173924	36.32093286102234	0.1327319587628866
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	234	632	848	47	5	2839.507240472657	2839.507240472657	3822	gi|16765317|ref|NP_460932.1| flagellar biosynthetic protein [Salmonella typhimurium LT2]	26769.52238293213	221	245	P.FKLMLFVL(V)[-52.99]DGWQLLMGSLAQSFYS.	1	4.0	4.0	3.9783897143742792	37.00042646510474	0.13264649066323245
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1686	2318	3096	59	18	17714.62526989844	17714.643049436032	952	gi|16763872|ref|NP_459487.1| putative transport protein [Salmonella typhimurium LT2]	59389.35606594604	143	309	L.DSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMVEKGDVGIASLTVDMGITIGKVVAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATL.A	0	5.0	5.0	0.006032294004802948	43.84425416818367	0.13706563706563707
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	881	1302	1742	94	17	10059.513734066408	10059.505361752927	840	gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2]	48739.14178295654	123	215	A.LLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHSLGLNALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLL.K	0	7.0	5.0	0.008725367344237078	49.2216317255141	0.1382636655948553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	212	609	818	74	12	6251.608437140625	6251.603437140626	2856	gi|16764823|ref|NP_460438.1| putative periplasmic protein [Salmonella typhimurium LT2]	33894.480238156735	2	314	M.KLKNTLLASALLSA(AAFSVHAATELTPEQAAALKPYDRIVITGRFNAIGDAVSAVSRRADKEGAASFYVVDTSEFGNSGNWRVVADVYKADAPKADAPKNRVINGIVELPKDQAVQLEPYDTVTVQGFYRSQPEVNDAITKAAKQKGAYAFYIVRQIDANQGGNQRITAFIYKQDAKKRIVQSPDAIPADSEAGRA)[-19644.02]ALAQGGEAAKKVEIPGVATSASPSAEVGRFFETQSS(KGGRYTVTLPDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTEISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLY)[-7867.81]K.	2	11.0	10.0	0.018875621286410356	51.15321702991935	0.13881748071979436
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1487	2059	2751	41	36	28233.577714921877	28233.26435680909	5772	gi|16766296|ref|NP_461911.1| exonuclease V beta chain [Salmonella typhimurium LT2]	134412.3427564673	750	998	Y.PLVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAEDLRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRACIEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVTSYSGLQQRGHSVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPINPQWVQEKLELSGFETRWEPVLTRWLDTVL.H	0	4.0	4.0	0.007356926741291965	52.94329382686608	0.13872832369942195
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1441	1991	2660	42	34	25769.689905625004	25769.930120664067	5844	gi|16766330|ref|NP_461945.1| putative outer membrane usher protein [Salmonella typhimurium LT2]	90058.84850903077	203	441	D.YQYSRFDSGQGASQSDFYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPKISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQVNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGLIASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRIN.Y	0	4.0	4.0	0.007726464567884524	57.01212671573572	0.1392811296534018
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	817	1235	1652	29	11	8339.088770519535	8339.088770519535	6614	gi|39546367|ref|NP_462331.2| 30S ribosomal subunit protein S14 [Salmonella typhimurium LT2]	11113.053682523194	1	49	.(MKAREVKRVALADKYFAKRAELKAI)[2684.01]ISDVNATDEDRWNAVLKLQTLPRD.S	1	7.0	7.0	2.59216746113733E-4	62.12977345473909	0.13919178960872355
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	608	1016	1360	25	16	9534.3326030625	9534.3226030625	8574	gi|16767704|ref|NP_463319.1| aspartate carbamoyltransferase regulatory subunit [Salmonella typhimurium LT2]	17360.948869901124	1	85	.(MTHDN)[-38.74]KLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITIGLNLPSGEMGRKDLIKIENTFLTEEQVNQLALYAPQATVNR.I	1	4.0	4.0	1.0490296715341687	71.79574955995241	0.1423076923076923
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	157	544	731	65	8	5240.6110928125	5240.6610928125	1866	gi|16764329|ref|NP_459944.1| putative amino-acid transporter [Salmonella typhimurium LT2]	52763.93295116943	73	473	V.STWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAL(KGDGSLIKEYTVVALQGLTLALFVFFMWVASRGMKSLKVVGSVAGIAMFIMSILYVVMAVTAPAITNVEIATTNITWQSFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLFLAVMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYYAFQKLGEYYHMGNSLMVIYAIANTLGQIAALVFSIDAPLKVLLGDADTKYIPQRLCRTNASGTPVNGYLLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVIRLAQKYKPEYVFIRNRALALTVGIWCFAFTAFACLTGIFPKMEAFTPEWTFQLTLNIVTPFVLVGLGLIFPLLARR)[-39394.03]NT.	1	8.0	7.0	0.021883633961130362	77.12243506168984	0.14221652786675207
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1368	1900	2539	53	24	17502.442647812502	17502.28861446899	418	gi|16763602|ref|NP_459217.1| putative inner membrane protein [Salmonella typhimurium LT2]	47124.187647061764	13	180	V.VVSAWIGNSIEYYDFLLYGLASALVFGPLFFPGASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGCLPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGLTGQLLATGVFIVVTQLPQEA.L	0	5.0	4.0	0.010732902943264476	77.63917624350647	0.14212548015364918
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	499	906	1214	37	10	6435.620146523438	6435.620146523438	216	gi|16763501|ref|NP_459116.1| 3-isopropylmalate isomerase large subunit [Salmonella typhimurium LT2]	50210.211179929196	302	362	T.DIIPDPASFSDPVERASAEKALAYMGLQPGVPLTDVAIDKVFIGSCTNSRIED(LRAAAEVA)[-20.64].K	1	7.0	5.0	0.01874951931994879	77.94117196206845	0.1420345489443378
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	202	599	804	28	13	6347.562015605469	6347.562015605469	868	gi|16763831|ref|NP_459446.1| ATP-dependent protease Lon [Salmonella typhimurium LT2]	87697.93292065186	671	732	E.(GATPKDGPSAGIAMCT)[53.20]ALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIK.T	1	7.0	5.0	0.022218103907628236	90.95816572970497	0.1432225063938619
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1129	1602	2142	15	12	8740.665326859376	8740.665326859376	7714	gi|16767270|ref|NP_462885.1| response regulator [Salmonella typhimurium LT2]	52352.32987804931	317	394	E.DIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAG(QEVLIQDLPGELFEASTPDSP)[.12].S	1	5.0	5.0	0.021036269463683567	108.42077609206537	0.14313099041533547
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1761	2452	3275	18	7	8119.024358625	8119.0493586249995	3218	gi|16765007|ref|NP_460622.1| putative integral membrane protein [Salmonella typhimurium LT2]	38896.470781522214	259	326	I.(RNML)[34.01]QAHRDIDQKQTLLVYFNEFADSSLNIMVYCFTKTTVWQEWLAVQQDVYLKIIAIVQENGADFAF.P	1	5.0	5.0	0.022246448481097077	109.33604191042296	0.14303959131545338
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	497	904	1211	43	5	2887.643215800782	2887.668215800782	5302	gi|16766058|ref|NP_461673.1| putative ATPase [Salmonella typhimurium LT2]	49915.044470029294	9	35	V.NNLFGILNYDIDLGNSETIII(TGPNGY)[-51.79].G	1	5.0	5.0	0.04058479831506498	112.06626437527363	0.1429483088704531
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1157	1630	2179	24	16	12860.0143401875	12860.1743401875	7954	gi|16767390|ref|NP_463005.1| soluble pyridine nucleotide transhydrogenase [Salmonella typhimurium LT2]	52032.00022717041	1	466	.(MPH)[42.01]SWDYDAVVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRL(LRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSRPYHPNDVDFSHPRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYR)[-39213.84]VAALNGLNRLF.	1	4.0	4.0	1.2397547957052035	119.76312905071792	0.1434948979591837
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	496	903	1210	48	5	2887.643215800782	2887.623215800782	2138	gi|16764462|ref|NP_460077.1| 4-hydroxyphenylacetate catabolism [Salmonella typhimurium LT2]	14304.210382657471	17	44	A.DLPGLFSKVNEALAASGIFPIGGIRSRA()[32.06].H	1	5.0	5.0	0.056834816307649944	125.53003979600776	0.14340344168260039
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2016	3180	4246	14	10	5377.094922898436	5377.0599228984365	4566	gi|16765688|ref|NP_461303.1| putative regulatory protein [Salmonella typhimurium LT2]	53476.34038372558	210	260	G.ALPPTLIESTLFGTVRGAYTGAENSQGYLELANGGTLFLD(ELNA)[-22.60]MPIEMQS.K	1	4.0	4.0	0.03531183858093314	130.04412024755933	0.14331210191082802
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1436	1983	2650	16	21	19647.18095298829	19647.18095298829	4828	gi|39546344|ref|NP_461434.2| phosphoribosylaminoimidazole synthetase [Salmonella typhimurium LT2]	37745.11950130981	55	238	C.ALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEPLFFLDYYATGKLDVDTAASVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFCVGVVEKSEIIDGSRVAEGDVLIALGSSGPHSNGYSLV(RKIIDVSGCDPQTTLLEGKPLADHLLEPTRIYVKSV)[-22.71].L	1	5.0	5.0	0.022943749733186296	170.37440072001684	0.14449395289624442
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1673	2303	3076	11	14	12106.00755740625	12105.94255740625	3014	gi|16764903|ref|NP_460518.1| putative glycosyl hydrolase [Salmonella typhimurium LT2]	95197.72521038575	468	572	T.LFFRQNMGLALNEVGAEPVTHHFSIERFHHEMKTRQARQ(PDALSGTSTHDTKRGEDARARLYTLT)[-173.04]EAPEQWSECLARWRQMNQTHVKFLNDGTAPKSADTWMLYQ.A	1	5.0	5.0	0.008337965717624752	178.74511598427773	0.1450381679389313
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1268	1758	2350	14	18	14043.622531851564	14043.552531851563	5842	gi|16766329|ref|NP_461944.1| putative fimbrial chaparone [Salmonella typhimurium LT2]	27690.407995419922	2	132	M.KNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAITLNN(DDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRI)[-573.15]TQVRGLTDKLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQS.Q	1	4.0	4.0	0.23319187799310173	218.9531563542256	0.1455816910362365
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	488	895	1199	47	8	6397.52741371875	6397.52741371875	840	gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2]	48739.14178295654	312	372	L.FFLAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTV(FL)[21.31].A	1	6.0	5.0	0.05365996587410354	223.3582637635421	0.14612452350698857
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1196	1676	2240	17	10	8390.590855531253	8390.600855531253	992	gi|16763892|ref|NP_459507.1| putative ABC transporter permease component [Salmonella typhimurium LT2]	23711.110613065186	109	188	D.SALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYSAMA(GIVGGGGVGDLAIRYGYYRYETEVM)[15.18].V	1	7.0	5.0	0.05008721517320934	250.85079561996542	0.14666666666666667
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1747	2418	3230	21	19	13493.199128085938	13493.199128085938	4110	gi|16765461|ref|NP_461076.1| response regulator [Salmonella typhimurium LT2]	27861.62521572632	2	125	M.(TELPIDENTPRILIVEDEPKLGQLLIDYLRAASY)[42.01](APTLINHGDK)[-634.41]VLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL.R	1	4.0	4.0	0.27143957530622737	256.7670190773922	0.14720812182741116
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1809	2566	3427	25	11	12217.512648773438	12217.577648773438	1946	gi|16764369|ref|NP_459984.1| exodeoxyribonuclease [Salmonella typhimurium LT2]	106713.52655621094	179	287	E.(ILRLEMDTDNSYVQNLLLAAENVEAFKKAIEH)[-23.83]DIHKIVNAVKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAGGGNKTDRNPDY.E	1	5.0	5.0	0.041597599348394125	262.11831449659076	0.1471147748890298
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	50	423	570	50	9	4416.472315091797	4416.522315091798	4028	gi|16765420|ref|NP_461035.1| CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase [Salmonella typhimurium LT2]	48529.50673504394	348	437	F.PITLKETSGVNRVELVKFLDEAKIGTRLLFA(GNLIRQPYFANVKYRVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFG)[-5981.96]LNF.	1	6.0	5.0	0.2502327417912396	262.36101911938425	0.14702154626108999
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	385	791	1060	55	13	7210.265914574221	7210.265914574221	1240	gi|16764018|ref|NP_459633.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	17445.16168423218	41	105	A.GKRGKNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLANELERWKQD(GRDVSLLIGGP)[35.41].E	1	5.0	5.0	0.06343251917547461	284.6692434329344	0.14756174794173527
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	353	754	1011	48	13	7210.282577171877	7210.297577171878	1308	gi|16764052|ref|NP_459667.1| N-acetylglucosamine operon transcriptional repressor [Salmonella typhimurium LT2]	44983.762853818356	22	86	A.AVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQASTGGRRAIS(IVTETRNF)[-15.66].H	1	5.0	5.0	0.0636692148029397	290.4136649989944	0.14810126582278482
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1378	1910	2552	29	25	17503.37574046485	17503.52574046485	2032	gi|16764409|ref|NP_460024.1| probable tail fiber protein [Phage Gifsy-2]	81490.82734509034	81	268	D.SKPGTLNDFLGAMTEDDVRPEALRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAGA(SETAAKTSETQAASSAGDAGASATAAA)[5.33].A	1	5.0	5.0	0.04086479459198874	295.58939240608123	0.14800759013282733
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1962	3100	4139	11	10	10180.587777390629	10180.517777390629	6090	gi|16766455|ref|NP_462070.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	15496.960283475342	25	114	S.(KNLP)[-19.90]KGKTKLSDYEPDILISANAAGQHRNVLFEERDRHIKERLYCVAKIETFARLINALQAEGDIDAQTLSKILADKTAMINEKGNAIWL.N	1	5.0	5.0	0.05244925633734558	298.0181777867097	0.14791403286978508
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	480	887	1188	14	12	7977.955066640626	7978.060066640625	4950	gi|16765882|ref|NP_461497.1| putative transcriptional regulator [Salmonella typhimurium LT2]	49441.89538403076	175	249	F.(AQAIHNASPRS)[35.03]NKPFVAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKL.L	1	4.0	4.0	0.06371133638069	305.59704764921827	0.147820593809223
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	561	968	1296	41	5	4024.8662538085946	4024.9212538085944	3438	gi|16765120|ref|NP_460735.1| isopentenyl monophosphate kinase [Salmonella typhimurium LT2]	31149.031511502686	43	78	H.IEPRHDGEIHLLTPVNGVENEDNLIVRAA(RLLMKVA)[-6.25].S	1	4.0	4.0	0.11349993979910433	325.4637411827337	0.14898989898989898
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	97	477	642	34	8	11120.861511	11120.741510999998	258	gi|16763522|ref|NP_459137.1| ATP-binding cell division protein [Salmonella typhimurium LT2]	45798.62402554077	287	387	R.(SLQRQTLAEVIEPRYTE)[-38.16]LLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK.E	1	5.0	5.0	0.05737580980773566	341.5717343720697	0.14952681388012617
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	391	797	1068	27	10	7210.269370992187	7210.2543709921865	4398	gi|16765604|ref|NP_461219.1| ribonucleoside diphosphate reductase 1 alpha subunit [Salmonella typhimurium LT2]	86309.64438839478	2	610	M.NQSLL(VTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPALYHHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKAS)[-62142.07]NELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHG.L	1	5.0	5.0	0.02455767468467978	418.46802810985065	0.15006305170239598
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	238	636	854	51	10	6292.620891945312	6292.620891945312	1646	gi|16764222|ref|NP_459837.1| putative inner membrane protein [Salmonella typhimurium LT2]	15681.486143308106	87	141	G.(Q)[11.13]NKAMPMIILVCALLTYGGVSLFVVAFANLFFTWLIPHI(YGDQFMINLPGLKKPL)[59.14].	2	8.0	8.0	0.3052815984591852	477.16551849836725	0.15248897290485192
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1839	2625	3506	23	14	12160.552345210937	12160.552345210937	4510	gi|16765660|ref|NP_461275.1| putative response regulator [Salmonella typhimurium LT2]	65772.94509335083	103	216	V.(AGLGAFMSSTGVVAIFIPVVLSVSMHMQTSPSRLMMPLSF)[-17.89]AGLISGMMTLVATPPNLVVNSELLREGLHGFNFFSVTPLGVVVLALGIVYMLVMRFMLKGDAPGQQAGKRRTFR.D	1	8.0	5.0	0.1054016396901279	659.1568237084102	0.15491183879093198
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1792	2526	3374	11	8	8794.4983839375	8794.4383839375	310	gi|16763548|ref|NP_459163.1| aconitate hydratase 2 [Salmonella typhimurium LT2]	94040.20024700684	438	520	L.(VMQSF)[-30.97]CHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAA.T	1	5.0	5.0	0.1348412718929694	693.6267120666524	0.1554436752674638
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1801	2542	3395	15	23	18572.740966613284	18572.740966613284	3138	gi|16764966|ref|NP_460581.1| putative MDO biosynthetic protein [Salmonella typhimurium LT2]	62585.793771939694	132	295	I.HFRPELFKYNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQL(GIAPMTSMFSCGNNERRVCDTIH)[-44.27].P	1	4.0	4.0	0.08717790934795844	714.0338332440003	0.15534591194968553
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	818	1236	1654	18	10	6980.683852703126	6980.673852703126	4392	gi|16765601|ref|NP_461216.1| putative permease [Salmonella typhimurium LT2]	49168.76818676513	164	222	G.WIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLPDSPEKAKWLTPQQIS(ALVNKLR)[44.95].T	1	4.0	4.0	0.17545539414878683	767.7353038155867	0.1565053425518542
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	333	733	983	12	11	7308.2254658984375	7308.230465898438	6830	gi|16766824|ref|NP_462439.1| 1,4-alpha-glucan branching enzyme [Salmonella typhimurium LT2]	84392.56437893433	310	371	T.(RRFGTR)[17.83]DDFRYFINAAHAAGLNVILDWVPGHFPSDEFSLAEFDGTHLYEHSDPREGYHQDWN.T	1	4.0	4.0	0.17000090386749006	785.2029003785187	0.157035175879397
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1135	1608	2150	18	14	10818.438624132812	10818.438624132812	1530	gi|16764164|ref|NP_459779.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	32720.10978527588	1	110	.(MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTT)[42.01]DNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAM(FEYRFGGNG)[-913.54]ELSGHNLGNLMLKALDHLSVR.P	1	4.0	4.0	0.6713923502906496	796.8729601930129	0.15756434400502198
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	915	1337	1788	17	13	10158.449799488282	10158.479799488283	2616	gi|16764703|ref|NP_460318.1| flavoprotein [Salmonella typhimurium LT2]	45291.45960827392	2	330	M.SDD(KFDAIVVGAGVAGTVAAYVMAKAGLDVLVIERGNSAGSKNMTGGRLYAHSIESIMPGFATSAPIERVVTREKISFLTEESAVTLDFHRAPPTPPLTSYTVLRNKLDPWLMAQAEQAGAQFIPGVRVDALVREGNRVTGVQAGDDILDANIVILADGVNSMLGRSLDMVPVSSAHHYAVGVKELIGLSPALIEERFNLASHEGAAWLFAGAPSNGLMGGGFLYTNRDSVSLGLVCGLG)[-24284.06]DIAHATKSVPQMLEDFKQHPAIRPLIQGGTLLEYSAHMVPEGGIAMMPELANDGVMIVGDAAGLCLNLGYTVRGMDLAIASAQAAAQTA.I	1	5.0	5.0	0.05165697560805528	923.9425926910285	0.1587202007528231
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1749	2422	3235	14	18	13493.094465609376	13493.204465609377	1146	gi|16763971|ref|NP_459586.1| ferric enterobactin transporter [Salmonella typhimurium LT2]	34276.10762615722	131	255	L.ALYDQLSAIAPTLVINYDDKSWQSLLTQLGEITGQEKQAAARIAEFETQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKLLTQLGFTLATLPRGLQTSKSQGKR(HDIIQLGGENLAA)[7.02].G	1	4.0	4.0	0.14428463301391722	949.5066807960526	0.15862068965517243
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1719	2376	3174	13	11	11782.18021024219	11782.215210242188	8236	gi|16767531|ref|NP_463146.1| formate-dependent nitrite reductase [Salmonella typhimurium LT2]	83081.84337444825	149	251	L.WSDPFLRIFPPAMEGRDLNPMLQHLGLILHPPLLYLGYGGLMTAASVALASLLCGGFNATTAWVCWRWALPGWCALTLGII(LGSWWAYCELGWGGWWFWDPVE)[10.40].N	1	4.0	4.0	0.15636624452094114	962.9323424313294	0.15852130325814537
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1161	1634	2184	36	20	12860.01013853125	12859.93013853125	7704	gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella typhimurium LT2]	103178.60803814454	615	728	L.EELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGR(RIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA)[-27.93].E	1	5.0	5.0	0.15370292755697762	990.6923927874079	0.1596743894802755
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1447	2000	2672	12	19	15163.594449410159	15163.599449410158	2342	gi|16764566|ref|NP_460181.1| respiratory NADH dehydrogenase 2 [Salmonella typhimurium LT2]	47589.71492596191	284	419	K.EIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCARPEGGFVPPRAQAAHQMATCAMKNILAQMNGKPLKAYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQI(ALHGYFKTGLMML)[33.03].V	1	4.0	4.0	0.14985918255910666	1037.4751869529257	0.16020025031289112
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	348	748	1003	16	10	7308.234450882813	7308.329450882813	198	gi|16763492|ref|NP_459107.1| L-arabinose isomerase [Salmonella typhimurium LT2]	56198.3029691748	413	479	T.VKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALDLND(MRQFAEIHDIEIAVIDND)[-35.43].T	1	4.0	4.0	0.22882696798228155	1040.1436938099107	0.16010006253908693
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1671	2299	3071	38	15	12106.034766269531	12106.034766269531	7466	gi|16767145|ref|NP_462760.1| L-glutamine/D-fructose-6-phosphate aminotransferase [Salmonella typhimurium LT2]	67063.69997997803	413	522	V.(LLMLVAKLSRLKGLDASIEHDIVHGLQALPS)[40.54]RIEQMLSQDKRIELLAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAP.N	1	7.0	5.0	0.16891707976373396	1058.5786706359638	0.16
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1810	2574	3438	11	23	19017.463109023443	19017.578109023445	3028	gi|16764910|ref|NP_460525.1| NAD-linked malate dehydrogenase [Salmonella typhimurium LT2]	63255.28268642944	237	406	Q.RWPDILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAAVTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQREGLSEDAARQNVFMVDRFGLLTDRMPNLLPF(QAKLVQKCDNLQHWDTENDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHK)[-5.11].H	1	4.0	4.0	0.14510192094420576	1066.1779621931594	0.1599000624609619
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	320	720	966	17	12	8518.699063265627	8518.739063265628	2004	gi|16764396|ref|NP_460011.1| probable minor tail protein [Phage Gifsy-2]	21417.884752469483	54	127	N.RRQGIPVRTVRRRARVRLARADKPFANIYVNCDPLTAIRLLSSPPSTPMRGRKGKPLRIGKYRFDRGFIAQ(APN)[-5.04].G	1	4.0	4.0	0.21639906252597624	1093.9469192596114	0.16104868913857678
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1125	1596	2134	19	14	9229.10549984375	9229.10549984375	5168	gi|16765991|ref|NP_461606.1| 30S ribosomal subunit protein S16 [Salmonella typhimurium LT2]	9229.012678342286	24	82	D.SRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVA(ALIKEVKKAA)[2666.59].	1	6.0	5.0	0.004673688396708501	1183.8788009520317	0.16219588271990018
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	776	1193	1596	38	20	12995.46907990625	12995.61407990625	76	gi|16763428|ref|NP_459043.1| putative arylsulfatase [Salmonella typhimurium LT2]	64019.08907146972	88	203	K.TAMPVEHLYTLTAGANLLPVLGLVADTENRIVFSQADTPLAVYTLITQPLPPVDSAEVVLGFPIINVTQPATDANKM(APGFYFITHFDRYNYALDQNGLVRWYVTQDYPSYNFVRI)[51.00].D	1	5.0	5.0	0.18572213087468706	1201.804573910121	0.16271820448877805
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	921	1344	1798	14	11	8129.320755113281	8129.300755113281	6254	gi|16766537|ref|NP_462152.1| putative inner membrane protein [Salmonella typhimurium LT2]	45637.97082729858	2	217	M.FESKINPLWQSFILA(VQEEVKPALGCTEPISLALAAAAAAAELNGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAKAVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKGVVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVP)[-14524.35]FDAIRFILDAARLNGALSQE.G	1	8.0	5.0	0.14200390435799212	1540.3098444530842	0.16635514018691588
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	263	663	890	21	5	2879.425442363282	2879.445442363282	8644	gi|16767740|ref|NP_463355.1| putative DNA repair ATPase [Salmonella typhimurium LT2]	139531.79764004273	1056	1079	E.RIDARIEESRQRLQEAHATSELQ(N)[30.00].S	1	4.0	4.0	0.703272693473463	1553.707592456432	0.16625155666251556
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	187	578	776	11	10	6348.5773128437495	6348.58231284375	2724	gi|16764757|ref|NP_460372.1| type III secretion system apparatus protein [Salmonella typhimurium LT2]	8111.42579861206	31	75	Q.LVCLALLLAGLNEPLKAAKILSDIDLPEAMALRLLF(PAPNEGFEN)[1475.93].	1	4.0	4.0	0.014932685037373924	1595.8779193384455	0.16677037958929683
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1750	2424	3238	22	17	13492.16662198047	13492.10162198047	6098	gi|16766459|ref|NP_462074.1| energy transduction protein [Salmonella typhimurium LT2]	26219.851099210206	22	144	I.(VVKCVMIG)[-27.01]LILASVVTWAIFFSKSVEFFTQKRRLKREQLQLADARSLDQASDIAAGFSAKSLSAQLINEAQNELELSQGSEDNEGIKERTGFRLERRVAAVGRYMGRGNGYLATIGAISPFVG.L	1	4.0	4.0	0.2798185203165514	1841.471911206934	0.16791044776119404
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1484	2055	2746	14	25	22931.79489041797	22931.699890417967	2524	gi|16764656|ref|NP_460271.1| succinylglutamic semialdehyde dehydrogenase [Salmonella typhimurium LT2]	53269.585359769284	218	427	L.FTGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDAANIDAAVHLTLQSAFITAGQRCTCARRLLVKQGAQGDAFLARLVDVAGRLQPGRWDDDPQPFIGGLISAQAAQHVMEAWRQREALGGRTLLAPRKVKEGTSLLTPGIIELTGVADVPDEEVFGPLLNVWRYAHFDEAIRLANNTRFGLSCGLVSTDRAQF(EQLLLEARAGIV)[49.80].N	1	4.0	4.0	0.2552493952364502	1912.323294034458	0.16842759477936606
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	86	462	622	17	12	11080.921000640625	11081.026000640624	7250	gi|16767035|ref|NP_462650.1| putative transport protein [Salmonella typhimurium LT2]	51091.64046688598	1	127	.(MKSEILSVKEKIGYGMGDA)[42.01]ASHIIFDNVMLYMMF(FYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI)[-3192.29]VCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVN.I	1	4.0	4.0	0.4633040026299445	1984.6311990649988	0.168944099378882
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1113	1573	2103	11	14	10088.13816116406	10088.148161164061	66	gi|16763423|ref|NP_459038.1| putative 5'-nucleotidase [Salmonella typhimurium LT2]	57258.33881207031	381	470	G.IRTELPKGNITYGDVLSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKT(VQFKYDSTKPLGQRIVEFDIKGKPVEDNKLYTVAL)[-15.06].D	1	4.0	4.0	0.3836454396129783	2161.949728666743	0.1707014276846679
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1355	1874	2504	15	20	15774.596999140627	15774.541999140627	2524	gi|16764656|ref|NP_460271.1| succinylglutamic semialdehyde dehydrogenase [Salmonella typhimurium LT2]	53269.585359769284	62	208	R.QAIVEKFAALLEAHKAELTEVIARETGKPRWEAATEVTAMINKIAISIKAYHARTGAQKSELVDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQGGR(ETGQALS)[26.05].S	1	4.0	4.0	0.3171184820921867	2226.584321999337	0.1705955334987593
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1591	2205	2946	43	16	11546.297350624998	11546.392350624998	1844	gi|16764318|ref|NP_459933.1| cytochrome-related transporter [Salmonella typhimurium LT2]	64893.23445721191	431	537	Q.NPQLPAATLRENVLLARPDASEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLLLDEPAASLDAHSEQRVMQALK(AASKRQTT)[7.31].L	1	5.0	5.0	0.39536831279056234	2407.1220733727587	0.17110973341599503
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2008	3168	4230	14	17	13357.677391167968	13357.54239116797	1382	gi|16764089|ref|NP_459704.1| putative UDP-galactopyranose mutase [Salmonella typhimurium LT2]	44880.286600308835	222	329	Q.(EMR)[26.41]TNYDHVFFSGALDAFYSCQYGRLEYRTLDFKKIICQSDYQGCAVMNYCSIDTPYTRITEHKYFSPWERHEASICYQEYSRECEAGDIPYYPVRRADKMDLLNKYL.S	1	4.0	4.0	0.3734563450339227	2448.7560869087174	0.17100371747211895
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1137	1610	2152	15	14	10818.438624132812	10818.508624132812	558	gi|16763672|ref|NP_459287.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	79813.63202114624	64	173	L.VKAAVAAAQAAAAAGMAQDAVSAIVSAVAGGPGAHNVTVSGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDLCVNIE(LDGGGKRH)[.88].I	1	4.0	4.0	0.4493761945848568	2638.268325449278	0.1721362229102167
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1918	2807	3748	15	19	15861.200210812502	15861.050210812502	2354	gi|39546312|ref|NP_460187.2| integral membrane protein [Salmonella typhimurium LT2]	43252.88560314697	1	354	.MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITL(GVMALVTVLSVMNGFERELQNNILGLMPQAILSAEHGSLNPNQMPEKAVNLQGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQSELQPGKYNVILGEQLAGQLGVNRGDQIRLMVPSASQFTPMGRLPSQRLFTVIGTFAANSEVDGYEMLVNIQDASRLMRYPAGNITGWRLWLDEPLQVDTLSQQTLPQGTKWQ)[-22607.16]DWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGALLGAALGALLASQLNNLMPIIGAFLDGA.A	1	4.0	4.0	0.09091423422376735	2669.794297029156	0.17202970297029702
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	334	734	984	11	14	7210.267976953127	7210.267976953127	400	gi|16763593|ref|NP_459208.1| putative chlorine transport protein [Salmonella typhimurium LT2]	50676.2064268164	1	137	.(MKTDTST)[42.01](FLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAPEAGGSGIPEIEGALEELRPVRWWRV)[-8101.12]LPVKFIGGMG.T	1	6.0	4.0	0.41139324600881133	2945.855524153568	0.1725417439703154
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1572	2167	2895	14	8	9646.793600500001	9646.793600500001	4618	gi|16765714|ref|NP_461329.1| phosphohistidine phosphatase [Salmonella typhimurium LT2]	17621.74665661377	68	157	M.NLPAQVDVLPELTPCGDVGLVSAYLQALANEEIGSVLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQMS(PCNLKM)[-36.01].A	1	5.0	4.0	0.5541725643047316	3024.910247346738	0.173053152039555
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2012	3173	4236	32	30	19015.109686789063	19015.109686789063	3138	gi|16764966|ref|NP_460581.1| putative MDO biosynthetic protein [Salmonella typhimurium LT2]	62585.793771939694	1	244	.MNRRRFIKGSM(AMAAVCGSSGIASLFSQAAFAAESDIADGKIVRFDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLDIQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFK)[-7840.15]YNDAGVDTTQLEGQSDLGFAGFRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFWFDTAKPGDTTFTVYALLDSASVTGAY.K	1	5.0	5.0	0.23321702941367883	3447.1657668122575	0.17356392835083384
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1979	3135	4186	11	15	11757.445072554687	11757.445072554687	2264	gi|16764527|ref|NP_460142.1| putative FlgK/FlgL export chaperone [Salmonella typhimurium LT2]	15979.139547543946	2	140	M.(TRLSEILDQMTT)[42.01](VLNDLKTVMDAEQQQLSVGQINGSQLQRITEEKSSLLATLDYLEQQRRLEQNAQRSANDDIAER)[-4264.90]WQAITEKTQHLRDLNQHNGWLLEGQIERNQQALEVLKPHQEPTLYGADGQTSVSHRGGK(KISI)[132.24].	2	5.0	5.0	2.401762625179206	3482.3520281902606	0.1734567901234568
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	112	497	668	34	8	11107.9230464375	11107.9330464375	5612	gi|16766217|ref|NP_461832.1| putative permease [Salmonella typhimurium LT2]	43853.649309354245	22	132	N.LFIASVAFPAMSVDLHTSISALAWVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRIVQGAGGGLLIP(VGQALTWQQFK)[-673.47]PHERAGVS.S	1	6.0	6.0	0.04805648725504306	3531.3009414939174	0.17334978408389884
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1970	3114	4158	21	16	11758.483817062499	11758.483817062499	4810	gi|16765810|ref|NP_461425.1| gcv operon transcriptional repressor [Salmonella typhimurium LT2]	23319.840135770264	34	139	I.TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGTWNAITLIESTLPLKGAELDLLIVMKRTSDRPRPAMPATVWVQVEVADSP(HLIERFTALFN)[12.43].S	1	4.0	4.0	0.5788591088282294	3567.9538487911645	0.17324290998766953
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1407	1949	2604	22	18	14955.365140109376	14955.470140109375	4558	gi|16765684|ref|NP_461299.1| putative amino acid transporter [Salmonella typhimurium LT2]	51959.74680538696	14	148	E.(GGLRRNLKKRHLLMMSLGGTIGTGLFIGI)[44.90]AEPLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTIGWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAI.N	1	4.0	4.0	0.5532026004371778	3801.0382789215255	0.17313616759088107
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1335	1845	2466	10	17	14917.138490355472	14916.968490355472	6	gi|16763394|ref|NP_459009.1| threonine synthase [Salmonella typhimurium LT2]	47186.3123151831	265	428	L.PVKRFIAATNVNDTVPRFLHDGKWAPKA(TQATLSNAMD)[-54.89]VSQPNNWPRVEELFRRKIWRLTELGYAAVDDTTTQQTMRELKAKGYISEPHAAVAYR(ALRDQLNPGEYGLFLGTAHPAKFKESVESILGETLALPEALA)[-3437.75]ERADLPLLSHHLPADFAALRKLMMTRQ.	2	6.0	6.0	0.023218400345070403	4439.492407188175	0.17364532019704434
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1748	2421	3234	18	28	22071.015050671875	22071.025050671873	4256	gi|16765534|ref|NP_461149.1| fructose-specific transport protein [Salmonella typhimurium LT2]	57679.74790783447	340	554	P.QSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTVNAVLLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLALGLATMVARRKFDKAQQEGGKAALVLGLCFITEGAIPFAARDPMRVLPCCIVGGALTGAISMAVGAKLMA(PHGGLFVLLIPGAITPVLGYLLAIVAGTLVAGLAYAVLKRPE)[-22.94].T	1	4.0	4.0	0.5987878326940168	4490.367537844074	0.17353846153846153
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	192	587	788	47	13	6348.587162089844	6348.587162089844	6246	gi|16766533|ref|NP_462148.1| putative inner membrane protein [Salmonella typhimurium LT2]	14198.568208890381	8	63	V.(LKNYLG)[.12]FGGRARRKEYWMFILVNIIFTFVLGLLDAMLGWQRAGGEGVLTTIYGVLI.F	1	4.0	4.0	1.249094751540934	5208.180323119653	0.17343173431734318
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1579	2181	2914	20	23	18173.851666316405	18173.856666316406	168	gi|16763476|ref|NP_459091.1| glutathione-regulated K+ efflux antiporter [Salmonella typhimurium LT2]	67181.89406796021	13	186	Y.LGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMGVCGGLIGLFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAIPLVAMIPLLAASG(ASTTLGAFALSAL)[-24.04].K	1	4.0	4.0	0.7953471557113921	5786.214071227499	0.17455439459127228
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	574	981	1314	55	6	4958.549429867187	4958.574429867187	8714	gi|16767774|ref|NP_463389.1| putative cobalamin biosynthetic protein [Salmonella typhimurium LT2]	35871.2901403479	121	166	R.YLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTK(TDVAGDS)[-17.95].E	1	4.0	4.0	1.7057392747272375	5828.078355452203	0.17444717444717445
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1275	1766	2360	18	19	14043.622641105472	14043.55264110547	852	gi|16763823|ref|NP_459438.1| cytochrome o ubiquinol oxidase subunit I [Salmonella typhimurium LT2]	74460.32880993409	27	151	V.(GGLAI)[31.15]LAAITYFGKWTYLWKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQIFTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVV.G	1	4.0	4.0	0.9019275761879474	6014.339383722043	0.17434008594229589
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	814	1231	1647	31	15	9615.285108933593	9615.410108933593	3568	gi|16765185|ref|NP_460800.1| heat shock protein [Salmonella typhimurium LT2]	31915.606332974854	43	131	F.GFGGSFISLLMSKWMALKSVGGEVIEQPRNERE(RWLMNTVATQARQAGIAMPQVAIYHAPDINAFATGARRDASLVAVSTGLLQNMSPD)[16.54].E	1	4.0	4.0	1.1031363828269796	6028.5102913626515	0.17423312883435582
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	218	615	826	21	12	6348.579606546878	6348.504606546878	4128	gi|16765469|ref|NP_461084.1| putative diacylglycerol kinase [Salmonella typhimurium LT2]	32293.470377164307	53	119	E.ARRLGVETVIAGG(GDGTINE)[-230.10]VSTALIQIRDGVAPALGLLPLGTANDFATSAGIPEALDKALKLAIAG.N	1	4.0	4.0	0.347785341413182	6324.827336430383	0.1747394236664623
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2011	3172	4235	22	18	13358.696543390624	13358.696543390624	1244	gi|16764020|ref|NP_459635.1| alpha ribazole-5'-P phosphatase [Salmonella typhimurium LT2]	23393.750612454834	70	183	R.DVPQHILPELNEMYFGDWEMRHHRDLTHEDAESYAAWCTDWQNAVPTNGEGFQAFTRRVERFISRLDAFSDCQNLLIVSHQGVLSLLIARLLTMPA(ASLWHFRVEQGCWSAIDI)[-47.78].C	1	4.0	4.0	0.886737020107084	6848.7853234933455	0.17524509803921567
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	145	532	715	43	11	6265.608503992187	6265.553503992187	8466	gi|16767646|ref|NP_463261.1| putative cationic amino acid transporter [Salmonella typhimurium LT2]	35220.32915325683	11	66	L.(AGLMWGLI)[-10.96]FVGPLIVPDYPALLQSMGRYLALGLIALPIAWLGRTRLRQLTRKDWST.A	1	5.0	4.0	1.986775245373446	8005.420763108767	0.17513778322106552
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1473	2030	2712	36	18	15163.608744453126	15163.723744453126	8262	gi|16767544|ref|NP_463159.1| putative putrescine/ornithine transport protein [Salmonella typhimurium LT2]	47357.90213604492	222	370	K.RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTI(FQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCA)[-29.18].A	1	4.0	4.0	2.0103603476504714	13808.301575924408	0.1762545899632803
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1587	2197	2935	26	38	29543.271731632813	29543.271731632813	1822	gi|16764307|ref|NP_459922.1| ATP-binding subunit of serine protease [Salmonella typhimurium LT2]	84155.8515340857	467	734	A.(IEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQ)[-15.11]DNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVA.L	1	4.0	4.0	2.1305037512088685	15098.89188031637	0.1761467889908257
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1358	1885	2519	21	19	14918.091650757817	14918.086650757818	6652	gi|16766735|ref|NP_462350.1| protein chain elongation factor EF-G [Salmonella typhimurium LT2]	77721.5418188147	235	663	M.EKYLGGEELTEEEIKQALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEP(FSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAKVTDIEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVI)[-32189.18]GDLSRRRGMLKGQESEVTGVKIHAEVPLSEM.F	1	6.0	6.0	0.008262523174053937	18656.864883360213	0.17665036674816625
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1954	3080	4112	12	15	16293.87653346875	16294.02153346875	1156	gi|16763976|ref|NP_459591.1| hypothetical protein STM0599 [Salmonella typhimurium LT2]	15214.566209989014	1	127	.(MIWKRHL)[2125.96]TLDELNATSQNTLVAHLGIVYTRLGDDVLEAEMPVDARTHQPFGLLHGGASAALAETLGSMAGYLMTRDGQCVVGTELNATHHRAISQGKVRGVCLPLHLGRQNQSWEITLFDEQGRRCC.T	1	4.0	4.0	0.08254626790821479	22244.443079179982	0.17654245571166768
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1948	3070	4099	10	8	8899.336244562499	8899.4562445625	3092	gi|16764942|ref|NP_460557.1| putative regulatory protein [Salmonella typhimurium LT2]	53423.67757626098	1	474	.(MKKYQRLAEQIREQIASGVWQPGDRLPSLREQV)[42.01](ASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQASRDTSVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAELRYAIARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVKACWLMTNSQNPL)[-22649.03]G(FTLSAEKKARLVALLTHHNVTLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKIHHNDSGYFLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWGEREEQ)[-21917.20]AVKQLGSLIREMLSAKSLV.	2	4.0	4.0	21.440480862704565	145751.0511485173	0.17887667887667888
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1336	1849	2471	15	19	14918.128760132817	14918.128760132817	5448	gi|16766133|ref|NP_461748.1| alanyl-tRNA synthetase [Salmonella typhimurium LT2]	96181.70944805664	730	876	G.(DKVRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPK)[-33.42]MLRTMVDDLKNQLGSTVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD(AAALPAALASVQ)[-296.69]GWVSAKLQ.	2	5.0	5.0	8.556920153624247	163737.24236657808	0.17876754118364857
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1849	2636	3520	12	17	12159.541625609378	12159.541625609378	596	gi|16763692|ref|NP_459307.1| putative acyl-CoA dehydrogenase [Salmonella typhimurium LT2]	89615.8647748999	1	814	.(MMILSI)[42.01](IATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWSIWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTEEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVPFQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRR)[-63167.80]ERISARLG(DVLSQLYLASAVLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAK)[-14330.53]AEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA.	2	4.0	4.0	21.608503131015127	197146.21206028818	0.17926829268292682
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1493	2067	2762	15	9	8374.314065914063	8374.314065914063	8852	gi|17233405|ref|NP_490494.1| putative phospholipase D [Salmonella typhimurium LT2]	15925.18680782837	26	102	Q.(RKQLVLKT)[8.40]IEAAQHNIRLMEYSFTSPEVAGALISAKRRGVDVRGGGLDWKANTGKNNNASRV(TMNLLTSAGIPVRTV)[21.41].S	2	5.0	5.0	0.6719308291792205	336718.5278678531	0.18159658744667886
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	813	1230	1646	17	16	9617.309632249999	9617.444632249999	8560	gi|16767698|ref|NP_463313.1| anaerobic ribonucleoside-triphosphate reductase [Salmonella typhimurium LT2]	80820.45850964112	1	712	.(MTPHVMKRDGCK)[-41.07]VPFKSERIKEAILRAAKAAGVDDADYC(ATVAEVVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQEIRGLVEQTNSALLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIHYHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVTESYNKHRKTADEWQIPDAEGYARSRTEKECYDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQASILRNRIAGLGKNRKTAVFPKLVFAIRDGLNHKFGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWENENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLEGVKARVAPILYMEGACGVRLKADDDVSEIFKNGRASISLGYIGIHETINALFGGEHLYDSEQLRAKGIAIVERLRQAVDQWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPGVTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDVWDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDAARVSVTRRVCGYLGSPDARPFNAG)[-71161.94]KQEEVKRRVKHLGNGQIG.	2	4.0	4.0	66.49018749720913	481732.73457505123	0.182095006090134
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1802	2546	3400	17	45	34819.851787949214	34819.851787949214	596	gi|16763692|ref|NP_459307.1| putative acyl-CoA dehydrogenase [Salmonella typhimurium LT2]	89615.8647748999	504	814	T.(RSMMIFGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASA)[8.60]VLKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRHYLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQRICKELGKNLPFTRLDELARNALAKGLID(KDEAAILAKAEESRLRSINVDDFEPEALATKPVKLPEKVRKVEAA)[198.02].	2	4.0	4.0	61.04872177835726	714377.623157388	0.18381010346926355
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1059	1500	2006	20	17	11759.500100632815	11759.480100632814	1370	gi|16764083|ref|NP_459698.1| putative carboxylase [Salmonella typhimurium LT2]	34665.68007488769	2	310	M.LNI(IRAGIYTS)[1599.04]VQDSGRHGFRQSGLSHCGALD(KPAFQTANLLVGNDANAPALEITLGQLVVEFENETWFALTGAGCEAQLDDQPVWTGWRLPVKAGQRLTLHRPLHGMRSYLAVAGGIAVPEVMGSYSTDLKSGIGGLEGRLLKDGDRLATGKPSRQFSGPQGVKQLLWGNRIRALPGPEYREFDRASQEAFWRSPWQLSPQSNRMGYRLQGQSLTRTTDRELLSHGLLPGVVQVPYNGQPIVLMNDAQTTGGYPRIACIIE)[-24374.20]ADMYHLAQIPLGQPIHFVQCSLEEALNARRERQRYLEQLTWRLQHEH.	2	4.0	4.0	145.01967906858155	749692.6804270814	0.18369829683698297
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	917	1339	1791	17	13	12201.894817289065	12201.794817289065	332	gi|16763559|ref|NP_459174.1| glucose dehydrogenase [Salmonella typhimurium LT2]	86839.07567806763	685	796	W.(KKRIGTPRDSMPFPMPVPV)[-13.77]PFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFG(TKMGDYIVAYALPDDAK)[295.66].	2	5.0	4.0	70.08585884572072	896065.681939933	0.18419452887537993
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1488	2060	2752	14	29	22097.332733843752	22097.622733843753	6178	gi|16766499|ref|NP_462114.1| putative membrane protein [Salmonella typhimurium LT2]	61429.18839092773	2	559	M.DDVFGILPSWMFTAIVAVIVLLIIGIIFARLYRRASAEQAFVRTGLGGQKVVMSGGAIVMPIFHEIIPIN(MNTLKLEVSRATVDSLITKDRMRVDVVVAFFVRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRRERNEVEQDVEVAVR)[-16075.23]EKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAA(FEAERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQSLPAVIEKSVEPMKSIDGIKIIQVDG)[-23125.30]LNRGATAGDVAAGGANGGNLAEQALSAALTYRTQAPLIDSLLNEIGIAGGSLKALTTPLVSSATDEINREATIKEQ.	2	4.0	4.0	59.39423780793477	977520.1498826868	0.18408262454434993
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	578	986	1320	20	5	3091.435641234376	3091.4406412343756	5772	gi|16766296|ref|NP_461911.1| exonuclease V beta chain [Salmonella typhimurium LT2]	134412.3427564673	1075	1101	G.(RYYLLD)[-11.00]YKSNWLGEDSAAY(TQTAMAAA)[31.01].M	2	6.0	5.0	5.108805820128757	1164324.2938561083	0.18397085610200364
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1508	2091	2794	13	24	21759.27550771875	21759.10050771875	512	gi|16763649|ref|NP_459264.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	37223.95026226562	133	331	G.(GLDKPEHDRFAFYIASLSGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEI)[19.77]TRLGTPAQSS(VL)[-210.96]GNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH.	2	4.0	4.0	85.44606946224664	1176988.9350383722	0.18385922330097088
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1065	1507	2015	28	18	11759.49966057031	11759.42466057031	4046	gi|16765429|ref|NP_461044.1| putative colanic acid biosynthetic protein [Salmonella typhimurium LT2]	51268.41045208496	1	467	.(MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYPADDGI)[42.01](ASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQDGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDDITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIRNVKAKNITPGFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIPQNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFLRNINVMQTSAI)[-38496.62]GPALKMHFDLRKD(VRGQFMARQDTLLSLANVHAINENGQSSVDIDRINHQTVN)[-1054.38]VEAVNFSLPKRGG.	2	4.0	4.0	143.45401294257337	1270315.1513537322	0.18435415403274713
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2013	3175	4239	15	27	13358.69230816992	13358.597308169921	8458	gi|16767642|ref|NP_463257.1| putative cell envelope opacity-associated protein A [Salmonella typhimurium LT2]	23141.857954221192	53	174	E.(TSDSPVVTRE)[54.53]AQLDLQSQSQPPTEAQLQAQLVAPQNDPDQVAPVAPEPIQEGQPEEQNQPQTQPFQQDSGIGQQWRSYRVESGKTLAQLFRDHGLPPTDVYAMAQVEGAGKPLS(NLKNGQMI)[-16.49].K	2	5.0	5.0	1.9544425084273733	1281465.8791453398	0.18424242424242424
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1811	2578	3443	22	22	19016.455370375006	19016.455370375006	1784	gi|16764288|ref|NP_459903.1| putative minor tail protein [Phage Fels-1]	79116.62779827637	374	563	D.(SEALASTPKAVKTVMGEVQTKAPLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSA)[-32.15]PEALDTLKELADALGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYIGLRNTIDKAAGALPAGGTAVAANRLVSRGALPALTGTTRGSD(SGLIMGEVYNNGYPTQYGNILRLTGTGDGEI)[12.65].L	2	7.0	6.0	1.97817886308854	1453591.1400989788	0.18413082980012113
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	214	611	820	18	4	3176.0649885468747	3176.0649885468747	5676	gi|16766249|ref|NP_461864.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	59013.74181957763	479	505	T.(NP)[16.98]YESSDLERIMTARKKY(FTTSAEKQS)[-20.48].A	2	5.0	5.0	7.780488660901289	1833994.0648211816	0.18462469733656175
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	960	1386	1854	14	19	13672.64030223047	13672.64030223047	7718	gi|16767272|ref|NP_462887.1| glutamine synthetase [Salmonella typhimurium LT2]	51980.82279797119	166	289	Y.EGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEI(QIYKYVVHNVAHRFGKTATFMPKP)[-11.00]MFGDNGSGMHCHMSLAKNGTNL(FSGDKYA)[-14.94].G	2	5.0	5.0	2.8691464273433787	1908039.8188458753	0.18451300665456746
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1491	2064	2758	33	31	27555.315554078123	27555.035554078124	4018	gi|16765415|ref|NP_461030.1| rhamnosyl transferase [Salmonella typhimurium LT2]	35714.25166912597	1	314	.(MKITLIIPTYNAGSLWPNVLDAIKQQTIYPDKLIVIDSGSKDETVPLASDLKNISIFNIDSKDFNHGGTRNLAVAKTL)[42.01]DADVIIFLTQDAILADSDAIKNLVYYFSDPLIAAVCGRQLPHK(DANPLAVHARNFNYSSKSIVKSKADIEKLGIKTVFMSNSFAAYRRSVFEELSGFPEHTILAEDMFMAAKMIQAGYK)[-8497.26]VAYCAEAVVRHSHNYTPREEFQRYFDTGVFHACSPWIQRDFGGAGGEGFRFVKSEIQFLLKNAPFWIPRALLTTFAKFLGYKLGKHWQSLPLSTCRYFSMYKSYWNNI(QYSSSKEIK)[296.03].	2	4.0	4.0	313.87081011059036	2216525.670995376	0.18440145102781136
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1489	2061	2754	22	28	26670.07731776563	26670.20231776563	6116	gi|16766468|ref|NP_462083.1| hypothetical protein STM3168 [Salmonella typhimurium LT2]	82656.77386303467	1	723	.MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSRDEMDQLGWDSCDIILVTGDAYVDHPSFG(MAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFGVTAGNMDSMINRYTADRKLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILGGIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIRDVRNTAIMVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKAITVQPPRPKPWEKTYILLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRYVWINPPAIPLSTEEMDSVFALPY)[-32937.13]QRVPHPAYGNARIPAYEMIRFSINIMRGCFGGCSFCSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAEQTCRRLSCVYPD(ICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIAVEDPRYIKELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQYLIPYFISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLGKIGYKSEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMG)[-23049.44]KKHLIGGRRECLVPAPTIEEMREARRQNRNTRPALTKHTPVEHQRQGLAANKKRGKGAGR.	2	4.0	4.0	139.58012823153922	2759176.2843514374	0.18429003021148035
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	200	596	800	11	7	3913.9540077304696	3913.98900773047	5676	gi|16766249|ref|NP_461864.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	59013.74181957763	323	356	W.(RD)[-63.13]WLGLSQ(NN)[128.21]QTEANYESPAQVVKVFNARSLTDV.K	2	4.0	4.0	14.072717388066152	4049898.343752245	0.18417874396135267
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	913	1335	1786	14	14	12202.930021757813	12202.930021757813	8916	gi|17233490|ref|NP_490528.1| hydrophilic protein [Salmonella typhimurium LT2]	27742.665640073243	23	130	D.(GAEIPSTNKHLKN)[23.46]NFNSLHNQMRKMPVSHFKEALDVPDYSGMRQSGFFAMSQGFQLNNHGYDVFIHARRESPQ(SQGKFAGDKFHISVLRDMVPQAFQALSGLLFSEDS)[-14.48].P	2	6.0	5.0	7.463452144422737	4659962.814116119	0.18406759203379602
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1425	1969	2631	15	16	16294.836542625	16294.836542625	9034	gi|17233465|ref|NP_490585.1| mating pair stabilization and pilus assembly protein [Salmonella typhimurium LT2]	102745.36131878418	419	576	I.(PP)[56.19]LSWMMVKGLGAGFSSVYSHFASSSISPTASAAAGVVDGNYSYGNMQTENVNGFSWSTNSTTSFGQMTYQTGSGATATQTRDGNMVMDASGAQSRLPVNINATRQIAAAQQEMAREASTQ(AESALHGFSSSIASAWNTLSQFGTNRGSSDSVTSGAD)[-39.84].S	2	5.0	5.0	6.778148684408282	4800635.79151493	0.18395657418576597
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1460	2016	2694	11	16	16510.516175125	16510.516175125	4362	gi|16765586|ref|NP_461201.1| electron transfer protein [Salmonella typhimurium LT2]	25822.835630612793	17	166	R.(DVVRTAGGLAAVGV)[9.84]ALGLQQQTARASGVRLRPPGALNENVFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFV(ARDIPCE)[1.67]MCEDIPCAKVCPSGALNKDIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEAITLELD.R	2	5.0	5.0	9.07320119906688	6463346.307047228	0.1838456901748041
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1064	1505	2012	20	19	12991.305030222657	12991.150030222656	888	gi|16763841|ref|NP_459456.1| ATP-binding component [Salmonella typhimurium LT2]	66293.43813534302	113	230	R.(TGDLIARATNDVDRVVFAAGEGVLTLVDS)[40.98]LVMGCAVLIVMSTQISWQLTLLALLPMPIMALMIKRYGDRLHDYFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSS(LFAADAEDT)[-39.52].G	2	5.0	5.0	10.096851396074657	6474785.5422086045	0.18373493975903615
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1878	2706	3614	11	15	12290.610547933593	12290.705547933592	754	gi|16763772|ref|NP_459387.1| putative exonuclease [Salmonella typhimurium LT2]	34239.647844510495	64	173	Q.IIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKK(T)[-100.28]EKDSLKDEVLHSLLPRAFSRFSQTMMWIDT(VNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLALENPIE)[19.20].L	2	6.0	5.0	6.7552306556155	7538276.1130796345	0.18362432269717038
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	771	1188	1590	18	15	10278.71210678125	10278.747106781251	7158	gi|16766989|ref|NP_462604.1| phosphoglyceromutase [Salmonella typhimurium LT2]	56333.28439922851	316	405	N.TFGEWMAKNDKT(QLRISETEKYAHVTFFFNGGVEEPFAGEERILINSPKVA)[144.58]TYDLQPEMSSAELTEKLVAAIESGKYDTIICN(YPNGDMV)[-43.77].G	2	5.0	5.0	9.09202610801198	7631060.410640973	0.18351383874849578
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1438	1986	2654	24	26	17447.53344549219	17447.63844549219	7386	gi|16767105|ref|NP_462720.1| putative cytochrome c peroxidase [Salmonella typhimurium LT2]	52273.335596280514	2	355	M.KKITLYATTVITVGLLCYLGLSGYVWYYDKQRSKKSDVQASVVGENNKILGYFR(EKGCDYCHTPSAELPFYSSFPVAKQLMDYDIQLGYKSFNLEAVRAALIADTPVPQSELNKIEWVMQHQTMPPTRYVALHWAGGVSDKERTDILNWIADQRERNYASADTDPAHRNEPVQPIPRNIPVDAKKVDLGFRLYHDERLSGDSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSVFNIEQFW)[-21693.50]DGRAATLQEQAGGPPLNPIEMASKSWDEIISKLDKDPVLKKDFQAVYPQGFTGENITDA(IAEFEK)[-715.74]TLITPDSAFDKWLRGDENALTAQQKHGYQLFKENKCATCH.G	2	6.0	6.0	2.344707944806548	7686807.615226213	0.18340348767288034
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1744	2412	3222	12	17	13493.20421963672	13493.25421963672	8574	gi|16767704|ref|NP_463319.1| aspartate carbamoyltransferase regulatory subunit [Salmonella typhimurium LT2]	17360.948869901124	2	136	M.(THDNKLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITIGLNLPSGEMGR)[42.01](KDLIKIENTFLTEE)[-1673.05]QVNQLALYAPQATVNRIDNYDVVGKSRPSLPERINNVLVCPNSNCISHAEPVSSSFAVKK(RANDIAL)[50.40].K	2	4.0	4.0	34.320046622766014	8529305.925929492	0.18389423076923078
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1280	1772	2368	12	20	14044.571969109375	14044.571969109375	4156	gi|16765483|ref|NP_461098.1| putative ATP-binding protein [Salmonella typhimurium LT2]	40075.52043362182	2	182	M.NEQSQAK(SPDTLRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHVELVMPFVWNSAFEVLKEQCSADLLRITGAKAI)[-8326.94](DWKLSYNIATLKRVKNQPGINGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGVLDADIYGPSIPTM)[3108.55]LGAEDQRPTSPDGTHMAPIMSHGLATNS.I	2	4.0	4.0	14.527384658159951	1.2181995957132969E7	0.1843843843843844
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	969	1395	1866	15	9	6851.70670166797	6851.70670166797	1854	gi|16764323|ref|NP_459938.1| hypothetical protein STM0962 [Salmonella typhimurium LT2]	49713.21085567993	127	188	F.(LPHIEDGTIT)[9.81]FIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQ(AMQDKTRGYGDQ)[-52.57].D	2	4.0	4.0	34.56153781272103	1.6249242486522913E7	0.18487394957983194
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1343	1859	2484	10	13	14917.153129023436	14917.153129023436	4738	gi|16765774|ref|NP_461389.1| putative ethanolamine operon regulator [Salmonella typhimurium LT2]	40143.660192685544	13	144	L.(YHEALPEDVKLTPRVEVDN)[-71.63]VHQRRTTDVYEHALTITAWQQIYDQLHPGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGIPATRGEQGFIGAQGLGSAEIATRP(GGTEFELSTPDDYTILGVVI)[8.25].S	2	5.0	4.0	20.54508688262615	2.0436552463785816E7	0.1853629274145171
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	288	688	923	28	5	3196.4945351601564	3196.4945351601564	258	gi|16763522|ref|NP_459137.1| ATP-binding cell division protein [Salmonella typhimurium LT2]	45798.62402554077	112	138	N.(VVHTAKSVR)[-.02]VRDEHRV(LHVIPQEYAID)[30.80].Y	2	4.0	4.0	101.74845263489938	2.4824286957343828E7	0.18645083932853718
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1957	3089	4124	15	8	9113.788363	9113.753363	5348	gi|16766083|ref|NP_461698.1| phase 2 flagellin [Salmonella typhimurium LT2]	52504.44756908935	152	240	N.(DGETIDIDLKQ)[-.01]INSQTLGLDSLNVQKAYDVKDTAVTTKAYANNGTTLDVSGLDDAAIKAATGGTNGTASVTGGAVKFDA(DNNKYFVTIG)[-10.79].G	2	4.0	4.0	62.61179529769666	3.3128145174139436E7	0.18753744757339724
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1510	2099	2804	13	15	16294.84333034375	16294.98833034375	3122	gi|16764958|ref|NP_460573.1| putative PTS system enzyme IIC component [Salmonella typhimurium LT2]	46949.63995571655	212	363	Q.(KRYGMVGDPVI)[-.04]IGVVLGLIFGLAAGEGFKGCATLMITVAAIMVLFPRMIRLIVEGLMPISDGARKFFQKHFKGREVFIGLDTAVTLGHPTTIAVGLLLIPIMLILASILPGNKVLPLADLPVAPFFICMATVIHRGDLIR(TLLSGIIVMITV)[-43.15].L	2	4.0	4.0	48.726185167403656	3.781485855306281E7	0.18742514970059881
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1695	2336	3120	16	15	11252.875199230468	11252.875199230468	72	gi|16763426|ref|NP_459041.1| putative arylsulfatase regulator [Salmonella typhimurium LT2]	46216.26008434814	61	158	D.IDEVIFAWQGGEPTLM(GIPFYRKAVEFQ)[28.65]QRYCGGKTIVNTFQTNGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEK(VENAVRCLA)[-28.35].Q	2	4.0	4.0	67.30471635200594	4.058135938792948E7	0.18731298623578696
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1916	2804	3744	11	29	28098.777905878906	28098.777905878906	514	gi|16763650|ref|NP_459265.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	70891.3523580603	2	203	M.(DPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADPYVERMIEAFSFLSARTQL)[42.01](KIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEGDLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTA)[3921.65]APP(DMPALHRYLPPNIHVAGALRIT)[1378.43]LRTFGELTFSELAGPARLPFYLCGEERI.A	2	4.0	4.0	37.439033339791536	4.0844826552307956E7	0.18720095693779903
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	638	1047	1402	12	5	3656.9918511250003	3656.981851125	8946	gi|17233426|ref|NP_490543.1| plasmid partition protein B [Salmonella typhimurium LT2]	36914.416902738034	147	178	N.(LREIGLRLMAL)[38.98]KESGFNQ(KEIAELEGLSQAKV)[48.04].T	2	5.0	4.0	135.76136985214268	4.589714323426953E7	0.18708906156604901
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1978	3133	4183	17	37	26821.026666714846	26820.981666714848	7404	gi|16767114|ref|NP_462729.1| 2-oxo-3-deoxygalactonate kinase [Salmonella typhimurium LT2]	31527.772779660645	2	270	M.(TARYIAIDWGSTNLRAWLYQGDKCLESRQSEAGVTRLNGKSPDAVLAEVTTHWRDSATPVVMAGMIGSNVGWQNAPYLPVPALFSAIGEQLTAVGD)[42.01](NIWIIPGLCVSREDNHNVMRGEETQLLGACELSPSSVYVMPGTHCKWVQTDTQQIHDFRTVMTG)[-2360.71]ELHHLLLRHSLVGAGLPEQEVSGDAYAAGLERGLNSPAVLPSLFEVRASHVLGHLAREQVSDFLSGLLIGAEVASMSESFAAQQAITLVAGPALISRYQ(QAFSAIGRDV)[-44.98].S	2	4.0	4.0	100.80158352852129	4.93077949046422E7	0.1869772998805257
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	287	687	922	33	5	3196.4945351601564	3196.4945351601564	8634	gi|16767735|ref|NP_463350.1| putative ATP-dependent Lon protease [Salmonella typhimurium LT2]	77755.56052990479	2	95	M.QTHHDL(PVPAVSEGELVAEGYDLDALLNQHFRGRVVRKDLTKQLKEGANVPVYVLEYLLGMYCASDDDQIVEQG)[-7417.78]LQNVKRILADNYVRP(DEAEK)[-58.14].V	2	4.0	4.0	205.70840987728923	4.979440104964605E7	0.18686567164179105
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1594	2208	2950	14	13	11545.274378820312	11545.274378820312	840	gi|39546296|ref|NP_459431.2| putative transport protein [Salmonella typhimurium LT2]	48739.14178295654	307	415	V.(IGVQL)[-10.16]FFLAFNLMEALLPSLISKESPAGYK(GTAMGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPPYVSSLRVEIPADIVADDRLKQRL)[8.38].L	2	5.0	4.0	105.67592322613876	6.434112096910898E7	0.1873508353221957
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1584	2190	2926	23	15	13647.881758539063	13647.981758539063	2922	gi|16764857|ref|NP_460472.1| dipeptidyl carboxypeptidase II [Salmonella typhimurium LT2]	77440.5658094458	165	284	S.ATLMSQFNQRLLAASKAGGLAVDDAHCLAGLSPEEMTVAAEAA(REKGLEERWFIPLLNTTQQPALATLRDRQTRENLFAASWTRAEK)[210.12]GDAHDTRAIVQR(LVEIRRCQAKLLGFPNYAAWK)[-3.08].M	2	4.0	4.0	67.91506457815535	1.5159841059422067E8	0.18783542039355994
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1757	2442	3262	19	14	16292.855489156253	16292.855489156253	936	gi|16763864|ref|NP_459479.1| DNA polymerase III tau/gamma subunits [Salmonella typhimurium LT2]	70894.17014141602	2	544	M.(SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT)[42.01](KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIA)[-14517.21]SGDGQVSTQAVSAMLGTLDDDQ(ALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQLQQPSAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLASVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLV)[-28889.43]EQVALNAWK.E	2	4.0	4.0	62.47598439385673	2.3735436432689428E8	0.18772348033373062
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1379	1911	2554	10	32	25375.837366124997	25375.694963651124	288	gi|16763537|ref|NP_459152.1| putative beta lactamase regulator [Salmonella typhimurium LT2]	32274.43305416626	52	276	M.VVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRNDPHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPVTLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKALPAWFASLADLHTSQYQVLTRLAQFSLAREPHTDKVETPKAAVSMAKKASFVVVVIIAL.L	0	3.0	3.0	4.648525754470025E-4	8.575016491275616E15	0.18820726622989875
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1920	2809	3751	12	36	31814.105872593755	31814.557981687016	1850	gi|16764321|ref|NP_459936.1| cell division protein [Salmonella typhimurium LT2]	148381.19957180542	548	832	A.GAAAAAPAFSLATGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDEEIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSGEQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ.Q	0	3.0	3.0	4.7819742054926097E-4	8.821185433580274E15	0.1880952380952381
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1756	2439	3258	10	31	22072.059812027343	22071.976495938718	1102	gi|16763949|ref|NP_459564.1| putative phosphosugar isomerases [Salmonella typhimurium LT2]	37046.463873105466	10	208	R.RIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTEGYAQYDELVSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAH.Q	0	2.0	2.0	0.0020112768911843375	3.7101510073043648E16	0.18798334324806662
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	979	1407	1882	11	28	16008.65859559375	16008.465803342291	4832	gi|16765821|ref|NP_461436.1| polyphosphate kinase [Salmonella typhimurium LT2]	80520.19114513916	324	462	W.FDKEKFRNGFDAIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKEGDDVVRYAHIGTGNFNE.K	0	4.0	2.0	0.0028329963637323476	5.2259558883520392E16	0.187871581450654
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	2015	3177	4242	10	36	23030.777624593753	23030.676229672852	108	gi|16763444|ref|NP_459059.1| putative oxalacetate decarboxylase subunit beta [Salmonella typhimurium LT2]	45028.65541286987	201	419	G.GADGPTAIYLSGKLAPELLGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLVALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKFLQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSNKVGLESDPQNFLLMHAMGPNVAGVIGS.A	0	2.0	2.0	0.003047885630069899	5.6223566183836416E16	0.18835412953060013
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	284	684	918	16	5	3455.577684554688	3455.5372411779754	1224	gi|16764010|ref|NP_459625.1| lipoate synthase [Salmonella typhimurium LT2]	36474.511991696774	281	311	S.PEEFDEMKAEALAMGFTHAACGPFVRSSYHA.D	0	2.0	2.0	0.00355162556749464	6.5515927889217072E16	0.18883610451306412
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1972	3116	4160	11	17	11758.529946824221	11758.528040128173	7252	gi|16767036|ref|NP_462651.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	13354.25049419922	15	114	A.LRMGYKECPDENAYGDAYYIKDGLKWIFNITGLKKRLGVYSDDDLRKQNYDVDTYYRVENQPEESADDEMQSLYHNLAVEEGEPVYLEGGMYLYPDGSIR.	0	1.0	1.0	0.013475496058058808	2.48579027049292736E17	0.19228486646884274
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1946	2928	3910	10	5	3205.396817875	3205.3759138159153	1324	gi|16764060|ref|NP_459675.1| citrate utilization protein b [Salmonella typhimurium LT2]	42148.79128475708	13	38	T.VLTEPEAEVERVMQVCNACRYCEGFC.A	0	1.0	1.0	0.013711734203809677	2.5293685166440672E17	0.19217081850533807
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1760	2450	3272	11	35	29443.348211097662	29443.464388089604	1580	gi|16764189|ref|NP_459804.1| putative transport protein [Salmonella typhimurium LT2]	81846.62930508179	1	263	.(M)[42.01]RWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKKAAYAALADVLENEASRNELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTRQYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPLYRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIAFQQSLFLNAFALIEFFKAILRLIFCPNVPELRPFAIQDATARYWN.R	0	1.0	1.0	0.07039593356062598	1.2985757702227287E18	0.19264967397747482
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1758	2445	3266	12	25	22073.044202890625	22073.17876644653	3394	gi|16765098|ref|NP_460713.1| putative phosphoesterase [Salmonella typhimurium LT2]	33414.06857128662	1	200	.(M)[42.01]RKMKIGLALGSGAARGWSHIGVIKALKQAGIDIDIVAGCSIGSLVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDFDHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNIN.E	0	1.0	1.0	0.07144221938983716	1.31787633714213632E18	0.19253554502369669
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1766	2463	3290	12	11	11567.908548726564	11568.020742612302	70	gi|16763425|ref|NP_459040.1| putative arylsulfatase [Salmonella typhimurium LT2]	56229.4892141394	401	497	T.LKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDRFETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG.	0	1.0	1.0	0.08055209324638413	1.48592384871763558E18	0.19242155121373594
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1764	2458	3283	13	27	23820.455142617186	23820.203844266358	2336	gi|16764563|ref|NP_460178.1| putative cytoplasmic protein [Salmonella typhimurium LT2]	32091.539690213624	1	208	.MRSNNNNPLTRDEILSRYFPQYRPAVATSQGLSGGSCIIAHDTHRVVLRRHHDPDAPPAHFLRHYRALSQLPASLAPRALFYTPGWMAVEYLHGVVNSALPDADELAALLYHLHQQPRFGWRIALSPLLAQYWSCCDPARRTPFWLRRLKQLQKNGEPRPLRLAPLHMDVHGDNIVLTSAGLRLIDWEYAGDGDIALELAAVWVEDER.Q	0	1.0	1.0	0.08244293649946476	1.52080375029071437E18	0.19230769230769232
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1765	2460	3286	14	28	25760.785075296873	25761.020750241696	734	gi|16763762|ref|NP_459377.1| putative permease [Salmonella typhimurium LT2]	43663.71051998657	1	237	.(M)[42.01]ESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEALSMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQLFLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADHIGLRAVFLITAMLLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLFFTTMVIQLCNGSISPILAL.F	0	1.0	1.0	0.08533002770917406	1.57406118295367834E18	0.192193968066233
/home/xiaowen/c_project/proteomics_cpp/testcases/data/st_no_digestion.msalign	1755	2436	3254	26	50	30654.958225890627	30654.841844754636	3034	gi|16764913|ref|NP_460528.1| formate dehydrogenase-N beta subunit [Salmonella typhimurium LT2]	33261.956773953854	1	272	.MSMETQDIIKRSATNAITPPPQARDYKAEVAKLIDVSSCVGCKACQVACSEWNDIRDNVGHCVGVYDNPADLSAKSWTVMRFTETEQNGKLEWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELGEQRVEKLKARGFEHAGIYNPQGVGGTHVMYVLHHANQPELYHGLPKDPQIDTSINLWKGALKPLAAAGFIATFAGL.I	0	1.0	1.0	0.1593138076744184	2.9388210375781811E18	0.19267139479905437
