//Copyright (c) 2014 - 2020, The Trustees of Indiana University.
//
//Licensed under the Apache License, Version 2.0 (the "License");
//you may not use this file except in compliance with the License.
//You may obtain a copy of the License at
//
//    http://www.apache.org/licenses/LICENSE-2.0
//
//Unless required by applicable law or agreed to in writing, software
//distributed under the License is distributed on an "AS IS" BASIS,
//WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
//See the License for the specific language governing permissions and
//limitations under the License.

#ifndef TOPPIC_TOPFD_ENV_ENV_RESCORE_HPP_
#define TOPPIC_TOPFD_ENV_ENV_RESCORE_HPP_

#include <vector>

#include "ms/env/match_env.hpp"

namespace toppic {

namespace env_rescore {

// Use the scoring function in msalign+ paper to compute scores of envelopes
// We are NOT using the function in TopFD.
void rescore(MatchEnvPtr2D &match_envs, const std::vector<std::vector<double> > &para);

}  // namespace env_rescore

}  // namespace toppic
#endif
