<?xml version="1.0"?>
<bioml>
	<note>
	Each one of the parameters for x! tandem is entered as a labeled note node. 
	Any of the entries in the default_input.xml file can be over-ridden by
	adding a corresponding entry to this file. This file represents a minimum
	input file, with only entries for the default settings, the output file
	and the input spectra file name. 
	See the taxonomy.xml file for a description of how FASTA sequence list 
	files are linked to a taxon name.
	</note>

	<note type="input" label="list path, default parameters">default_input.xml</note>
	<note type="input" label="list path, taxonomy information">taxonomy.xml</note>

	<note type="input" label="protein, taxon">yeast</note>
	
	<note type="input" label="spectrum, path">test_spectra.mgf</note>

	<note type="input" label="output, path">output.xml</note>
</bioml>
