/*
    Theseus - maximum likelihood superpositioning of macromolecular structures

    Copyright (C) 2004-2015 Douglas L. Theobald

    This file is part of THESEUS.

    THESEUS is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as
    published by the Free Software Foundation, either version 3 of
    the License, or (at your option) any later version.

    THESEUS is distributed in the hope that it will be useful, but
    WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public
    License along with THESEUS in the file 'COPYING'. If not, see
    <http://www.gnu.org/licenses/>.

    -/_|:|_|_\-
*/

#include <stdlib.h>
#include <string.h>
#include <stdio.h>
#include <math.h>
#include <float.h>
#include <pthread.h>
#include "CovMat.h"
#include "DLTutils.h"
#include "Error.h"
#include "HierarchVars.h"
#include "pdbMalloc.h"
#include "pdbStats.h"
#include "pdbIO.h"
#include "pdbUtils.h"
#include "ProcGSLSVD.h"
#include "ProcGSLSVDNu.h"
#include "Embed.h"
#include "FragDist.h"
#include "CovMat.h"
#include "RandCds.h"
#include "msa.h"
#include "MultiPose2MSA.h"
#include "Threads.h"
#include "ProcGSLSVD.h"
#include "ProcGSLSVDNu.h"
#include "qcprot.h"
#include "GibbsMet.h"
#include "internmat.h"
#include "DLTmath.h"
#include "distfit.h"
#include <gsl/gsl_rng.h>

