NOTICE

| OpenRasMol | Copying and Distribution | Contents | Installation Instructions |
| Changes | Things To Do | Introduction | Source Code and Binaries |
| RasMol Manual | Spanish Translation of RasMol Manual | Italian Translation of RasMol Help File |
| Donate to Support RasMol | Release README | Register your RasMol |

## COPYING

This version is based directly on RasMol version 2.7.3. This version is based in large part on RasMol version 2.7.2.1.1, Rasmol version 2.7.2, RasMol version 2.7.1.1 and RasTop version 1.3 and indirectly on the RasMol 2.5-ucb and 2.6-ucb versions and version 2.6_CIF.2, RasMol 2.6x1 and RasMol_2.6.4.

RasMol versions 2.7.3 and higher may be distributed under the terms of the GNU General Public License (the GPL), see

http://www.gnu.org/licenses/gpl.txt

or see below or type the command `help GPL` in RasMol

or RasMol 2.7.3 may be distributed under the RASMOL license. See the below or type the command `help RASLIC` in RasMol

## NEW RasMol Licence (GPL)
(Valid for versions of RasMol starting with Release 2.7.3)

    ========================== GPL STARTS HERE =================================
    		    GNU GENERAL PUBLIC LICENSE
    		       Version 2, June 1991

     Copyright (C) 1989, 1991 Free Software Foundation, Inc.
                           59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
     Everyone is permitted to copy and distribute verbatim copies
     of this license document, but changing it is not allowed.

    			    Preamble

      The licenses for most software are designed to take away your
    freedom to share and change it.  By contrast, the GNU General Public
    License is intended to guarantee your freedom to share and change free
    software--to make sure the software is free for all its users.  This
    General Public License applies to most of the Free Software
    Foundation's software and to any other program whose authors commit to
    using it.  (Some other Free Software Foundation software is covered by
    the GNU Library General Public License instead.)  You can apply it to
    your programs, too.

      When we speak of free software, we are referring to freedom, not
    price.  Our General Public Licenses are designed to make sure that you
    have the freedom to distribute copies of free software (and charge for
    this service if you wish), that you receive source code or can get it
    if you want it, that you can change the software or use pieces of it
    in new free programs; and that you know you can do these things.

      To protect your rights, we need to make restrictions that forbid
    anyone to deny you these rights or to ask you to surrender the rights.
    These restrictions translate to certain responsibilities for you if you
    distribute copies of the software, or if you modify it.

      For example, if you distribute copies of such a program, whether
    gratis or for a fee, you must give the recipients all the rights that
    you have.  You must make sure that they, too, receive or can get the
    source code.  And you must show them these terms so they know their
    rights.

      We protect your rights with two steps: (1) copyright the software, and
    (2) offer you this license which gives you legal permission to copy,
    distribute and/or modify the software.

      Also, for each author's protection and ours, we want to make certain
    that everyone understands that there is no warranty for this free
    software.  If the software is modified by someone else and passed on, we
    want its recipients to know that what they have is not the original, so
    that any problems introduced by others will not reflect on the original
    authors' reputations.

      Finally, any free program is threatened constantly by software
    patents.  We wish to avoid the danger that redistributors of a free
    program will individually obtain patent licenses, in effect making the
    program proprietary.  To prevent this, we have made it clear that any
    patent must be licensed for everyone's free use or not licensed at all.

      The precise terms and conditions for copying, distribution and
    modification follow.

    		    GNU GENERAL PUBLIC LICENSE
       TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION

      0. This License applies to any program or other work which contains
    a notice placed by the copyright holder saying it may be distributed
    under the terms of this General Public License.  The "Program", below,
    refers to any such program or work, and a "work based on the Program"
    means either the Program or any derivative work under copyright law:
    that is to say, a work containing the Program or a portion of it,
    either verbatim or with modifications and/or translated into another
    language.  (Hereinafter, translation is included without limitation in
    the term "modification".)  Each licensee is addressed as "you".

    Activities other than copying, distribution and modification are not
    covered by this License; they are outside its scope.  The act of
    running the Program is not restricted, and the output from the Program
    is covered only if its contents constitute a work based on the
    Program (independent of having been made by running the Program).
    Whether that is true depends on what the Program does.

      1. You may copy and distribute verbatim copies of the Program's
    source code as you receive it, in any medium, provided that you
    conspicuously and appropriately publish on each copy an appropriate
    copyright notice and disclaimer of warranty; keep intact all the
    notices that refer to this License and to the absence of any warranty;
    and give any other recipients of the Program a copy of this License
    along with the Program.

    You may charge a fee for the physical act of transferring a copy, and
    you may at your option offer warranty protection in exchange for a fee.

      2. You may modify your copy or copies of the Program or any portion
    of it, thus forming a work based on the Program, and copy and
    distribute such modifications or work under the terms of Section 1
    above, provided that you also meet all of these conditions:

        a) You must cause the modified files to carry prominent notices
        stating that you changed the files and the date of any change.

        b) You must cause any work that you distribute or publish, that in
        whole or in part contains or is derived from the Program or any
        part thereof, to be licensed as a whole at no charge to all third
        parties under the terms of this License.

        c) If the modified program normally reads commands interactively
        when run, you must cause it, when started running for such
        interactive use in the most ordinary way, to print or display an
        announcement including an appropriate copyright notice and a
        notice that there is no warranty (or else, saying that you provide
        a warranty) and that users may redistribute the program under
        these conditions, and telling the user how to view a copy of this
        License.  (Exception: if the Program itself is interactive but
        does not normally print such an announcement, your work based on
        the Program is not required to print an announcement.)

    These requirements apply to the modified work as a whole.  If
    identifiable sections of that work are not derived from the Program,
    and can be reasonably considered independent and separate works in
    themselves, then this License, and its terms, do not apply to those
    sections when you distribute them as separate works.  But when you
    distribute the same sections as part of a whole which is a work based
    on the Program, the distribution of the whole must be on the terms of
    this License, whose permissions for other licensees extend to the
    entire whole, and thus to each and every part regardless of who wrote it.

    Thus, it is not the intent of this section to claim rights or contest
    your rights to work written entirely by you; rather, the intent is to
    exercise the right to control the distribution of derivative or
    collective works based on the Program.

    In addition, mere aggregation of another work not based on the Program
    with the Program (or with a work based on the Program) on a volume of
    a storage or distribution medium does not bring the other work under
    the scope of this License.

      3. You may copy and distribute the Program (or a work based on it,
    under Section 2) in object code or executable form under the terms of
    Sections 1 and 2 above provided that you also do one of the following:

        a) Accompany it with the complete corresponding machine-readable
        source code, which must be distributed under the terms of Sections
        1 and 2 above on a medium customarily used for software interchange; or,

        b) Accompany it with a written offer, valid for at least three
        years, to give any third party, for a charge no more than your
        cost of physically performing source distribution, a complete
        machine-readable copy of the corresponding source code, to be
        distributed under the terms of Sections 1 and 2 above on a medium
        customarily used for software interchange; or,

        c) Accompany it with the information you received as to the offer
        to distribute corresponding source code.  (This alternative is
        allowed only for noncommercial distribution and only if you
        received the program in object code or executable form with such
        an offer, in accord with Subsection b above.)

    The source code for a work means the preferred form of the work for
    making modifications to it.  For an executable work, complete source
    code means all the source code for all modules it contains, plus any
    associated interface definition files, plus the scripts used to
    control compilation and installation of the executable.  However, as a
    special exception, the source code distributed need not include
    anything that is normally distributed (in either source or binary
    form) with the major components (compiler, kernel, and so on) of the
    operating system on which the executable runs, unless that component
    itself accompanies the executable.

    If distribution of executable or object code is made by offering
    access to copy from a designated place, then offering equivalent
    access to copy the source code from the same place counts as
    distribution of the source code, even though third parties are not
    compelled to copy the source along with the object code.

      4. You may not copy, modify, sublicense, or distribute the Program
    except as expressly provided under this License.  Any attempt
    otherwise to copy, modify, sublicense or distribute the Program is
    void, and will automatically terminate your rights under this License.
    However, parties who have received copies, or rights, from you under
    this License will not have their licenses terminated so long as such
    parties remain in full compliance.

      5. You are not required to accept this License, since you have not
    signed it.  However, nothing else grants you permission to modify or
    distribute the Program or its derivative works.  These actions are
    prohibited by law if you do not accept this License.  Therefore, by
    modifying or distributing the Program (or any work based on the
    Program), you indicate your acceptance of this License to do so, and
    all its terms and conditions for copying, distributing or modifying
    the Program or works based on it.

      6. Each time you redistribute the Program (or any work based on the
    Program), the recipient automatically receives a license from the
    original licensor to copy, distribute or modify the Program subject to
    these terms and conditions.  You may not impose any further
    restrictions on the recipients' exercise of the rights granted herein.
    You are not responsible for enforcing compliance by third parties to
    this License.

      7. If, as a consequence of a court judgment or allegation of patent
    infringement or for any other reason (not limited to patent issues),
    conditions are imposed on you (whether by court order, agreement or
    otherwise) that contradict the conditions of this License, they do not
    excuse you from the conditions of this License.  If you cannot
    distribute so as to satisfy simultaneously your obligations under this
    License and any other pertinent obligations, then as a consequence you
    may not distribute the Program at all.  For example, if a patent
    license would not permit royalty-free redistribution of the Program by
    all those who receive copies directly or indirectly through you, then
    the only way you could satisfy both it and this License would be to
    refrain entirely from distribution of the Program.

    If any portion of this section is held invalid or unenforceable under
    any particular circumstance, the balance of the section is intended to
    apply and the section as a whole is intended to apply in other
    circumstances.

    It is not the purpose of this section to induce you to infringe any
    patents or other property right claims or to contest validity of any
    such claims; this section has the sole purpose of protecting the
    integrity of the free software distribution system, which is
    implemented by public license practices.  Many people have made
    generous contributions to the wide range of software distributed
    through that system in reliance on consistent application of that
    system; it is up to the author/donor to decide if he or she is willing
    to distribute software through any other system and a licensee cannot
    impose that choice.

    This section is intended to make thoroughly clear what is believed to
    be a consequence of the rest of this License.

      8. If the distribution and/or use of the Program is restricted in
    certain countries either by patents or by copyrighted interfaces, the
    original copyright holder who places the Program under this License
    may add an explicit geographical distribution limitation excluding
    those countries, so that distribution is permitted only in or among
    countries not thus excluded.  In such case, this License incorporates
    the limitation as if written in the body of this License.

      9. The Free Software Foundation may publish revised and/or new versions
    of the General Public License from time to time.  Such new versions will
    be similar in spirit to the present version, but may differ in detail to
    address new problems or concerns.

    Each version is given a distinguishing version number.  If the Program
    specifies a version number of this License which applies to it and "any
    later version", you have the option of following the terms and conditions
    either of that version or of any later version published by the Free
    Software Foundation.  If the Program does not specify a version number of
    this License, you may choose any version ever published by the Free Software
    Foundation.

      10. If you wish to incorporate parts of the Program into other free
    programs whose distribution conditions are different, write to the author
    to ask for permission.  For software which is copyrighted by the Free
    Software Foundation, write to the Free Software Foundation; we sometimes
    make exceptions for this.  Our decision will be guided by the two goals
    of preserving the free status of all derivatives of our free software and
    of promoting the sharing and reuse of software generally.

    			    NO WARRANTY

      11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
    FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
    OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
    PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
    OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
    MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
    TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
    PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
    REPAIR OR CORRECTION.

      12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
    WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
    REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
    INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
    OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
    TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
    YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
    PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
    POSSIBILITY OF SUCH DAMAGES.

    		     END OF TERMS AND CONDITIONS

    	    How to Apply These Terms to Your New Programs

      If you develop a new program, and you want it to be of the greatest
    possible use to the public, the best way to achieve this is to make it
    free software which everyone can redistribute and change under these terms.

      To do so, attach the following notices to the program.  It is safest
    to attach them to the start of each source file to most effectively
    convey the exclusion of warranty; and each file should have at least
    the "copyright" line and a pointer to where the full notice is found.

        Copyright (C)

        This program is free software; you can redistribute it and/or modify
        it under the terms of the GNU General Public License as published by
        the Free Software Foundation; either version 2 of the License, or
        (at your option) any later version.

        This program is distributed in the hope that it will be useful,
        but WITHOUT ANY WARRANTY; without even the implied warranty of
        MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
        GNU General Public License for more details.

        You should have received a copy of the GNU General Public License
        along with this program; if not, write to the Free Software
        Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

    Also add information on how to contact you by electronic and paper mail.

    If the program is interactive, make it output a short notice like this
    when it starts in an interactive mode:

        Gnomovision version 69, Copyright (C) year name of author
        Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
        This is free software, and you are welcome to redistribute it
        under certain conditions; type `show c' for details.

    The hypothetical commands `show w' and `show c' should show the appropriate
    parts of the General Public License.  Of course, the commands you use may
    be called something other than `show w' and `show c'; they could even be
    mouse-clicks or menu items--whatever suits your program.

    You should also get your employer (if you work as a programmer) or your
    school, if any, to sign a "copyright disclaimer" for the program, if
    necessary.  Here is a sample; alter the names:

      Yoyodyne, Inc., hereby disclaims all copyright interest in the program
      `Gnomovision' (which makes passes at compilers) written by James Hacker.

      , 1 April 1989
      Ty Coon, President of Vice

    This General Public License does not permit incorporating your program into
    proprietary programs.  If your program is a subroutine library, you may
    consider it more useful to permit linking proprietary applications with the
    library.  If this is what you want to do, use the GNU Library General
    Public License instead of this License.

    =========================== GPL ENDS HERE ==================================

## OLD RasMol License (RASLIC)
(Valid for versions of RasMol in the 2.7 series)

    ========================= RASLIC STARTS HERE ===============================

    If you do not use the GPL, the following license terms apply:

                               RasMol License

    Even though the authors of the various documents and software found here
    have made a good faith effort to ensure that the documents are correct and
    that the software performs according to its documentation, and we would
    greatly appreciate hearing of any problems you may encounter, the programs
    and documents any files created by the programs are provided **AS IS**
    without any warranty as to correctness, merchantability or fitness for any
    particular or general use.

    THE RESPONSIBILITY FOR ANY ADVERSE CONSEQUENCES FROM THE USE OF PROGRAMS OR
    DOCUMENTS OR ANY FILE OR FILES CREATED BY USE OF THE PROGRAMS OR DOCUMENTS
    LIES SOLELY WITH THE USERS OF THE PROGRAMS OR DOCUMENTS OR FILE OR FILES AND
    NOT WITH AUTHORS OF THE PROGRAMS OR DOCUMENTS.

    Subject to your acceptance of the conditions stated above, and your respect
    for the terms and conditions stated in the notices below, if you are not
    going to make any modifications or create derived works, you are given
    permission to freely copy and distribute this package, provided you do the
    following:

       * 1. Either include the complete documentation, especially the file
         NOTICE, with what you distribute or provide a clear indication where
         people can get a copy of the documentation; and
       * 2. Give credit where credit is due citing the version and original
         authors properly; and
       * 3. Do not give anyone the impression that the original authors are
         providing a warranty of any kind.

    In addition, you may also modify this package and create derived works
    provided you do the following:

       * 4. Explain in your documentation how what you did differs from this
         version of RasMol; and
       * 5. Make your modified source code available.

    ========================== RASLIC ENDS HERE ================================

## General Notice

Creative endeavors depend on the lively exchange of ideas. There are laws and customs which establish rights and responsibilities for authors and the users of what authors create. This notice is not intended to prevent you from using the software and documents in this package, but to ensure that there are no misunderstandings about terms and conditions of such use.

Please read the following notice carefully. If you do not understand any portion of this notice, please seek appropriate professional legal advice before making use of the software and documents included in this software package. In addition to whatever other steps you may be obliged to take to respect the intellectual property rights of the various parties involved, if you do make use of the software and documents in this package, please give credit where credit is due by citing this package, its authors and the URL or other source from which you obtained it, or equivalent primary references in the literature with the same authors.

Some of the software and documents included within this software package are the intellectual property of various parties, and placement in this package does not in any way imply that any such rights have in any way been waived or diminished.

With respect to any software or documents for which a copyright exists, ALL RIGHTS ARE RESERVED TO THE OWNERS OF SUCH COPYRIGHT.

Even though the authors of the various documents and software found here have made a good faith effort to ensure that the documents are correct and that the software performs according to its documentation, and we would greatly appreciate hearing of any problems you may encounter, the programs and documents any files created by the programs are provided **AS IS** without any warranty as to correctness, merchantability or fitness for any particular or general use.

THE RESPONSIBILITY FOR ANY ADVERSE CONSEQUENCES FROM THE USE OF PROGRAMS OR DOCUMENTS OR ANY FILE OR FILES CREATED BY USE OF THE PROGRAMS OR DOCUMENTS LIES SOLELY WITH THE USERS OF THE PROGRAMS OR DOCUMENTS OR FILE OR FILES AND NOT WITH AUTHORS OF THE PROGRAMS OR DOCUMENTS.

## RasMol 2.6 Notice

Information in this document is subject to change without notice and does not represent a commitment on the part of the supplier. This package is sold/distributed subject to the condition that it shall not, by way of trade or otherwise, be lent, re-sold, hired out or otherwise circulated without the supplier's prior consent, in any form of packaging or cover other than that in which it was produced. No part of this manual or accompanying software may be reproduced, stored in a retrieval system on optical or magnetic disk, tape or any other medium, or transmitted in any form or by any means, electronic, mechanical, photocopying, recording or otherwise for any purpose other than the purchaser's personal use.

This product is not to be used in the planning, construction, maintenance, operation or use of any nuclear facility nor the flight, navigation or communication of aircraft or ground support equipment. The author shall not be liable, in whole or in part, for any claims or damages arising from such use, including death, bancruptcy or outbreak of war.

## The IUCr Policy
for the Protection and the Promotion of the STAR File and
CIF Standards for Exchanging and Archiving Electronic Data

### Overview

The Crystallographic Information File (CIF)[1] is a standard for information interchange promulgated by the International Union of Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the recommended method for submitting publications to Acta Crystallographica Section C and reports of crystal structure determinations to other sections of Acta Crystallographica and many other journals. The syntax of a CIF is a subset of the more general STAR File[2] format. The CIF and STAR File approaches are used increasingly in the structural sciences for data exchange and archiving, and are having a significant influence on these activities in other fields.

### Statement of intent

The IUCr's interest in the STAR File is as a general data interchange standard for science, and its interest in the CIF, a conformant derivative of the STAR File, is as a concise data exchange and archival standard for crystallography and structural science.

### Protection of the standards

To protect the STAR File and the CIF as standards for interchanging and archiving electronic data, the IUCr, on behalf of the scientific community,

* holds the copyrights on the standards themselves,

* owns the associated trademarks and service marks, and

* holds a patent on the STAR File.

These intellectual property rights relate solely to the interchange formats, not to the data contained therein, nor to the software used in the generation, access or manipulation of the data.

### Promotion of the standards

The sole requirement that the IUCr, in its protective role, imposes on software purporting to process STAR File or CIF data is that the following conditions be met prior to sale or distribution.

* Software claiming to read files written to either the STAR File or the CIF standard must be able to extract the pertinent data from a file conformant to the STAR File syntax, or the CIF syntax, respectively.

* Software claiming to write files in either the STAR File, or the CIF, standard must produce files that are conformant to the STAR File syntax, or the CIF syntax, respectively.

* Software claiming to read definitions from a specific data dictionary approved by the IUCr must be able to extract any pertinent definition which is conformant to the dictionary definition language (DDL)[3] associated with that dictionary.

The IUCr, through its Committee on CIF Standards, will assist any developer to verify that software meets these conformance conditions.

### Glossary of terms

[1] CIF:

is a data file conformant to the file syntax defined at http://www.iucr.org/iucr-top/cif/spec/index.html

[2] STAR File:

is a data file conformant to the file syntax defined at http://www.iucr.org/iucr-top/cif/spec/star/index.html

[3] DDL:

is a language used in a data dictionary to define data items in terms of "attributes". Dictionaries currently approved by the IUCr, and the DDL versions used to construct these dictionaries, are listed at http://www.iucr.org/iucr-top/cif/spec/ddl/index.html

Last modified: 30 September 2000

IUCr Policy Copyright (C) 2000 International Union of Crystallography

## CBFlib V0.1 Notice

The following Diclaimer Notice applies to CBFlib V0.1, from which this code is in part is derived.

- The items furnished herewith were developed under the sponsorship of the U.S. Government. Neither the U.S., nor the U.S. D.O.E., nor the Leland Stanford Junior University, nor their employees, makes any warranty, express or implied, or assumes any liability or responsibility for accuracy, completeness or usefulness of any information, apparatus, product or process disclosed, or represents that its use will not infringe privately-owned rights. Mention of any product, its manufacturer, or suppliers shall not, nor is it intended to, imply approval, disapproval, or fitness for any particular use. The U.S. and the University at all times retain the right to use and disseminate the furnished items for any purpose whatsoever.

Notice 91 02 01

## CIFPARSE Notice

Portions of this software are loosely based on the CIFPARSE software package from the NDB at Rutgers university (see http://ndbserver.rutgers.edu/NDB/mmcif/software). CIFPARSE is part of the NDBQUERY application, a program component of the Nucleic Acid Database Project [ H. M. Berman, W. K. Olson, D. L. Beveridge, J. K. Westbrook, A. Gelbin, T. Demeny, S. H. Shieh, A. R. Srinivasan, and B. Schneider. (1992). The Nucleic Acid Database: A Comprehensive Relational Database of Three-Dimensional Structures of Nucleic Acids. Biophys J., 63, 751-759.], whose cooperation is gratefully acknowledged, especially in the form of design concepts created by J. Westbrook.

Please be aware of the following notice in the CIFPARSE API:

This software is provided WITHOUT WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. RUTGERS MAKE NO REPRESENTATION OR WARRANTY THAT THE SOFTWARE WILL NOT INFRINGE ANY PATENT, COPYRIGHT OR OTHER PROPRIETARY RIGHT.

| OpenRasMol | Copying and Distribution | Contents | Installation Instructions |
| Changes | Things To Do | Introduction | Source Code and Binaries |
| RasMol Manual | Spanish Translation of RasMol Manual | Italian Translation of RasMol Help File |
| Donate to Support RasMol | Release README | Register your RasMol |

Updated 26 January 2008. yaya@bernstein-plus-sons.com