Integration tool: pyFAI-integrate
=================================

Purpose
-------

PyFAI-integrate is a graphical interface (based on Python/Qt5) to perform azimuthal integration
on a set of files. It exposes most of the important options available within pyFAI and allows you
to select a GPU (or an openCL platform) to perform the calculation on.

.. figure:: ../img/integrate.png
   :align: center
   :alt: image


Usage
-----

``pyFAI-integrate [options] file1.edf file2.edf ...``

Options:
--------

	positional arguments:
	  FILE                  Files to be integrated

	optional arguments:

**-h**, **--help**
   show this help message and exit

**-V**, **--version**
   show program's version number and exit

**-v**, **--verbose**
   switch to verbose/debug mode

**--debug**
   Set logging system in debug mode

**-o** OUTPUT, **--output** OUTPUT
   Directory or file where to store the output data

**-f** FORMAT, **--format** FORMAT
   output data format (can be HDF5)

**-s** SLOW, **--slow-motor** SLOW
   Dimension of the scan on the slow direction (makes sense only with
   HDF5)

**-r** RAPID, **--fast-motor** RAPID
   Dimension of the scan on the fast direction (makes sense only with
   HDF5)

**--no-gui**
   Process the dataset without showing the user interface.

**-j** JSON, **--json** JSON
   Configuration file containing the processing to be done

**--monitor-name** MONITOR_KEY
   Name of the monitor in the header of each input files. If defined the
   contribution of each input file is divided by the monitor. If the
   header does not contain or contains a wrong value, the contribution
   of the input file is ignored. On EDF files, values from 'counter_pos'
   can be accessed by using the expected mnemonic. For example
   'counter/bmon'.

**--delete**
   Delete the destination file if already exists

**--append**
   Append the processing to the destination file using an available
   group (HDF5 output)

**--overwrite**
   Overwrite the entry of the destination file if it already exists
   (HDF5 output)

Tips & Tricks:
--------------

PyFAI-integrate saves all parameters in a .azimint.json (hidden) file.
This JSON file is an ascii file which can be edited and used to
configure online data analysis using the LImA plugin of pyFAI.

Nota:
there is bug in debian6 making the GUI crash (to be fixed inside pyqt)
http://bugs.debian.org/cgibin/bugreport.cgi?bug=697348
