L-Index
Date: 2014-08-08

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## L

LABEL_GROUP - Static variable in class meltinggui.MeltingLayout
  Component group type: label group.
layoutContainer(Container) - Method in class meltinggui.MeltingLayout
  Lays out the container argument using this MELTING layout.
legalInformation - Static variable in class melting.configuration.OptionManagement
  Option name for the melting legal information.
loadData(HashMap<String, String>) - Method in interface melting.methodInterfaces.PatternComputationMethod
  To load the necessary thermodynamic parameters of the implemented class.
loadData(HashMap<String, String>) - Method in class melting.patternModels.InternalLoops.Santalucia04InternalLoop
loadData(HashMap<String, String>) - Method in class melting.patternModels.PatternComputation
loadData(HashMap<String, String>) - Method in class melting.patternModels.secondDanglingEnds.SecondDanglingEndMethod
loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Santalucia04SingleBulgeLoop
loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Turner99_06SingleBulgeLoop
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.McTigue04LockedAcid
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11SingleMismatchLockedAcid
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11TandemLockedAcid
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Sugimoto01Hydroxyadenine
loadData(HashMap<String, String>) - Method in class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
loadFile(String, DataCollect) - Method in interface melting.methodInterfaces.PatternComputationMethod
  To load the thermodynamic parameters from the file "name" and stock them in the map of a DataCollect object.
loadFile(String, DataCollect) - Method in class melting.patternModels.PatternComputation
loadSequencesTest(String) - Static method in class examples.MainTest
  loads the data from the file and stocks them in a Properties object.
lockedAcidMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of locked nucleic acid computation method.
LockedAcidNNMethod - Class in melting.patternModels.specificAcids
  This class represents the locked nucleic acid (AL, GL, CL or TL) model owc11.
LockedAcidNNMethod() - Constructor for class melting.patternModels.specificAcids.LockedAcidNNMethod
lockedAcidSingleMismatchMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of locked nucleic acid with single mismatch computation method.
logError(String) - Static method in class melting.configuration.OptionManagement
  Logs an error to the melting logger.
logError(String, Throwable) - Static method in class melting.configuration.OptionManagement
  Logs an error message to the melting logger, along with the error itself.
logException(Exception) - Method in class meltinggui.frames.ErrorFrame
  Logs an exception into the exception log text area.
logException(Exception) - Method in class meltinggui.frames.OuterFrame
  Logs an exception on to the error frame.
logFileName(String) - Static method in class melting.configuration.OptionManagement
  Logs a file name to the melting logger.
logInfo(String) - Static method in class melting.configuration.OptionManagement
  Logs information to the melting logger.
logMessage(String) - Static method in class melting.configuration.OptionManagement
  Logs a message to the melting logger.
logMethodName(String) - Static method in class melting.configuration.OptionManagement
  Logs the name of a method to the melting logger.
logTemperatureEquation(String) - Static method in class melting.configuration.OptionManagement
  Logs a temperature equation to the melting logger.
logWarning(String) - Static method in class melting.configuration.OptionManagement
  Logs a warning to the melting logger.
longBulgeLoopMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of long bulge loop computation method.
longDanglingEndMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of long dangling end computation method.

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