T-Index
Date: 2014-08-08

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## T

Tan06MagnesiumCorrection - Class in melting.ionCorrection.magnesiumCorrections
  This class represents the magnesium correction model tanmg06.
Tan06MagnesiumCorrection() - Constructor for class melting.ionCorrection.magnesiumCorrections.Tan06MagnesiumCorrection
Tan06SodiumCorrection - Class in melting.ionCorrection.sodiumCorrections
  This class represents the sodium correction model tanna06.
Tan06SodiumCorrection() - Constructor for class melting.ionCorrection.sodiumCorrections.Tan06SodiumCorrection
Tan07MagnesiumCorrection - Class in melting.ionCorrection.magnesiumCorrections
  This class represents the magnesium correction model tanmg07.
Tan07MagnesiumCorrection() - Constructor for class melting.ionCorrection.magnesiumCorrections.Tan07MagnesiumCorrection
Tan07MixedNaMgCorrection - Class in melting.ionCorrection.mixedNaMgCorrections
  This class represents the mixed (Na,Mg) correction model tanmix07.
Tan07MixedNaMgCorrection() - Constructor for class melting.ionCorrection.mixedNaMgCorrections.Tan07MixedNaMgCorrection
Tan07SodiumCorrection - Class in melting.ionCorrection.sodiumCorrections
  This class represents the sodium correction model tanna07.
Tan07SodiumCorrection() - Constructor for class melting.ionCorrection.sodiumCorrections.Tan07SodiumCorrection
Tanaka04 - Class in melting.patternModels.cricksPair
  This class represents the nearest neighbor model tan04.
Tanaka04() - Constructor for class melting.patternModels.cricksPair.Tanaka04
Tanaka04SingleBulgeLoop - Class in melting.patternModels.singleBulge
  This class represents the single bulge loop model tan04.
Tanaka04SingleBulgeLoop() - Constructor for class melting.patternModels.singleBulge.Tanaka04SingleBulgeLoop
tandemLockedAcidMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of tandem locked nucleic acid computation method.
tandemMismatchMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of tandem mismatches computation method.
temperatureCorrection - Static variable in class melting.ionCorrection.magnesiumCorrections.Owczarzy08MagnesiumCorrection
  temperature formula
ThermodynamicParameterError - Exception in melting.exceptions
  This class represents a problem with the thermodynamic parameters.
ThermodynamicParameterError() - Constructor for exception melting.exceptions.ThermodynamicParameterError
ThermodynamicParameterError(String, Throwable) - Constructor for exception melting.exceptions.ThermodynamicParameterError
ThermodynamicParameterError(Throwable) - Constructor for exception melting.exceptions.ThermodynamicParameterError
ThermodynamicParameterError(String) - Constructor for exception melting.exceptions.ThermodynamicParameterError
Thermodynamics - Class in melting
  This class represents the thermodynamic energy.
Thermodynamics(double, double) - Constructor for class melting.Thermodynamics
ThermoHandler - Class in melting.handlers
  This class represents a Handler to parse the subnodes to the data nodes in the xml files.
ThermoHandler(String) - Constructor for class melting.handlers.ThermoHandler
  creates a ThermoHandler object and initialises the instance variables of this object.
ThermoResult - Class in melting
  This class extends Thermodynamics.
ThermoResult(double, double, double) - Constructor for class melting.ThermoResult
  creates a ThermoResult object initialised with the double enthalpy, double entropy and double Tm.
threshold - Static variable in class melting.configuration.OptionManagement
  Option name for the threshold value.
Turner06 - Class in melting.patternModels.cricksPair
  This class represents the nearest neighbor model tur06.
Turner06() - Constructor for class melting.patternModels.cricksPair.Turner06
Turner06InternalLoop - Class in melting.patternModels.InternalLoops
  This class represents the internal loop model tur06.
Turner06InternalLoop() - Constructor for class melting.patternModels.InternalLoops.Turner06InternalLoop
Turner06mm - Class in melting.patternModels.singleMismatch
  This class represents the single mismatch model tur06.
Turner06mm() - Constructor for class melting.patternModels.singleMismatch.Turner06mm
Turner99_06LongBulgeLoop - Class in melting.patternModels.longBulge
  This class represents the long bulge loop model tur06.
Turner99_06LongBulgeLoop() - Constructor for class melting.patternModels.longBulge.Turner99_06LongBulgeLoop
Turner99_06SingleBulgeLoop - Class in melting.patternModels.singleBulge
  This class represents the single bulge loop model tur06.
Turner99_06SingleBulgeLoop() - Constructor for class melting.patternModels.singleBulge.Turner99_06SingleBulgeLoop
Turner99_06tanmm - Class in melting.patternModels.tandemMismatches
  This class represents the tandem mismatches model tur06.
Turner99_06tanmm() - Constructor for class melting.patternModels.tandemMismatches.Turner99_06tanmm
Turner99Wobble - Class in melting.patternModels.wobble
  This class represents the GU base pair model tur99.
Turner99Wobble() - Constructor for class melting.patternModels.wobble.Turner99Wobble

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