A-Index
Date: 2014-08-08

A B C D E F G H I L M N O P R S T U V W X Z

## A

a - Variable in class melting.ionCorrection.magnesiumCorrections.Owczarzy08MagnesiumCorrection
addData(HashMap<String, Thermodynamics>) - Method in class melting.DataCollect
  add all of the mappings from the specified HashMap to the data of DataCollect.
addLayoutComponent(Component, Object) - Method in class meltinggui.MeltingLayout
  Adds a component to the layout, specifying that it belongs either to the label group or to the input group, according to the constraint given.
addLayoutComponent(String, Component) - Method in class meltinggui.MeltingLayout
  Deprecated.
  Only here because the interface demands it. Replaced by `addLayoutComponent(Component, Object)`.
addObserver(Observer) - Method in class meltinggui.frames.MeltingFrame
  Adds an observer to the melting frame observable.
addObserver(Observer) - Method in class meltinggui.frames.OuterFrame
  Adds an observer to the melting frame.
addResult(double, double) - Method in class melting.Environment
  increments the ThermoResult enthalpy and ThermoResult entropy of Environment.
aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan06MagnesiumCorrection
aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan07MagnesiumCorrection
Ahsen01 - Class in melting.approximativeMethods
  This class represents the approxiamtive model ahs01.
Ahsen01() - Constructor for class melting.approximativeMethods.Ahsen01
Ahsen01_NaEquivalent - Class in melting.ionCorrection.sodiumEquivalence
  This class represents the model for a sodium equivalence ahs01.
Ahsen01_NaEquivalent() - Constructor for class melting.ionCorrection.sodiumEquivalence.Ahsen01_NaEquivalent
Ahsen01DMSOCorrection - Class in melting.otherCorrections.dmsoCorrections
  This class represents the DMSO correction model ahs01.
Ahsen01DMSOCorrection() - Constructor for class melting.otherCorrections.dmsoCorrections.Ahsen01DMSOCorrection
Ahsen01SodiumCorrection - Class in melting.ionCorrection.sodiumCorrections
  This class represents the sodium correction model ahs01.
Ahsen01SodiumCorrection() - Constructor for class melting.ionCorrection.sodiumCorrections.Ahsen01SodiumCorrection
AllawiSantalucia97 - Class in melting.patternModels.cricksPair
  This class represents the nearest neighbor model all97.
AllawiSantalucia97() - Constructor for class melting.patternModels.cricksPair.AllawiSantalucia97
AllawiSantaluciaPeyret97_98_99mm - Class in melting.patternModels.singleMismatch
  This class represents the single mismatch model allsanpey.
AllawiSantaluciaPeyret97_98_99mm() - Constructor for class melting.patternModels.singleMismatch.AllawiSantaluciaPeyret97_98_99mm
AllawiSantaluciaPeyret97_98_99tanmm - Class in melting.patternModels.tandemMismatches
  This class represents the tandem mismatches model allsanpey.
AllawiSantaluciaPeyret97_98_99tanmm() - Constructor for class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
ApproximativeMode - Class in melting.approximativeMethods
  This class represents the approximative model.
ApproximativeMode() - Constructor for class melting.approximativeMethods.ApproximativeMode
approximativeMode - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of approximative computation method.
ArgsMessage - Class in meltinggui
  A message that GUI components can send the main program, containing MELTING arguments that it can use to get results.
ArgsMessage(ArgsMessage.ArgumentType, String) - Constructor for class meltinggui.ArgsMessage
  Fills in the argument type and command-line arguments.
ArgsMessage.ArgumentType - Enum in meltinggui
  The different possible types of arguments that can be sent.
Asanuma05Azobenzene - Class in melting.patternModels.specificAcids
  This class represents the azobenzene (X_C or X_T) model asa05.
Asanuma05Azobenzene() - Constructor for class melting.patternModels.specificAcids.Asanuma05Azobenzene
azobenzeneMethod - Static variable in class melting.configuration.OptionManagement
  Option name for the choice of azobenzene computation method.

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