Uses of Class melting.ThermoResult (MELTING Java 5 API)
Date: 2013-10-04

## Uses of Class
melting.ThermoResult

- Packages that use ThermoResult
  Package | Description
  --- | ---
  melting |
  melting.approximativeMethods |
  melting.configuration |
  melting.correctionMethods |
  melting.ionCorrection.magnesiumCorrections |
  melting.ionCorrection.mixedNaMgCorrections |
  melting.ionCorrection.sodiumCorrections |
  melting.methodInterfaces |
  melting.nearestNeighborModel |
  melting.otherCorrections.dmsoCorrections |
  melting.otherCorrections.formamideCorrections |
  melting.patternModels |
  melting.patternModels.cngPatterns |
  melting.patternModels.cricksPair |
  melting.patternModels.InternalLoops |
  melting.patternModels.longBulge |
  melting.patternModels.longDanglingEnds |
  melting.patternModels.secondDanglingEnds |
  melting.patternModels.singleBulge |
  melting.patternModels.singleDanglingEnds |
  melting.patternModels.singleMismatch |
  melting.patternModels.specificAcids |
  melting.patternModels.tandemMismatches |
  melting.patternModels.wobble |
  meltinggui |
  meltinggui.dialogs |
  meltinggui.frames |

- - ### Uses of ThermoResult in melting

    Methods in melting that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `static ThermoResult` | Main.`getMeltingResults(String[] args, OptionManagement optionManager)` Compute the entropy, enthalpy and melting temperature, and return these results.
    `ThermoResult` | Environment.`getResult()` This method is called to get the ThermoResult of Environment.

    Methods in melting with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `void` | Environment.`setResult(ThermoResult result)` changes the result ThermoResult of Environment.

  - ### Uses of ThermoResult in melting.approximativeMethods

    Methods in melting.approximativeMethods that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Santalucia98.`computesThermodynamics()`
    `ThermoResult` | WetmurDNARNA91.`computesThermodynamics()`
    `ThermoResult` | ApproximativeMode.`computesThermodynamics()`
    `ThermoResult` | Wetmur91.`computesThermodynamics()`
    `ThermoResult` | MarmurChester62_93.`computesThermodynamics()`
    `ThermoResult` | MarmurSchildkrautDoty.`computesThermodynamics()`
    `ThermoResult` | Owen69.`computesThermodynamics()`
    `ThermoResult` | WetmurDNA91.`computesThermodynamics()`
    `ThermoResult` | Ahsen01.`computesThermodynamics()`
    `ThermoResult` | WetmurRNA91.`computesThermodynamics()`

  - ### Uses of ThermoResult in melting.configuration

    Methods in melting.configuration that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | RegisterMethods.`computeOtherMeltingCorrections(Environment environment)` corrects the melting temperature if other agents are present in the solution (formamide, DMSO, ...)

  - ### Uses of ThermoResult in melting.correctionMethods

    Methods in melting.correctionMethods that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | DNADMSOCorrections.`correctMeltingResult(Environment environment, double parameter)`
    `ThermoResult` | EntropyCorrection.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.ionCorrection.magnesiumCorrections

    Methods in melting.ionCorrection.magnesiumCorrections that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Owczarzy08MagnesiumCorrection.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.ionCorrection.mixedNaMgCorrections

    Methods in melting.ionCorrection.mixedNaMgCorrections that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Owczarzy08MixedNaMgCorrection.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.ionCorrection.sodiumCorrections

    Methods in melting.ionCorrection.sodiumCorrections that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Owczarzy04SodiumCorrection19.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Santalucia96SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | MarmurSchildkrautDoty98_62SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Tan07SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Tan06SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Owczarzy04SodiumCorrection22.`correctMeltingResults(Environment environment)`
    `ThermoResult` | FrankKamenetskii71SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Wetmur91SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | SchildkrautLifson65SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Owczarzy04SodiumCorrection21.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Santalucia98_04SodiumCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Owczarzy04SodiumCorrection20.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.methodInterfaces

    Methods in melting.methodInterfaces that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | MeltingComputationMethod.`computesThermodynamics()` This method is called to compute the melting temperature.
    `ThermoResult` | PatternComputationMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | CorrectionMethod.`correctMeltingResults(Environment environment)` This method is called to correct the computed melting temperature.

    Methods in melting.methodInterfaces with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | PatternComputationMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.nearestNeighborModel

    Methods in melting.nearestNeighborModel that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | NearestNeighborMode.`computesThermodynamics()`

  - ### Uses of ThermoResult in melting.otherCorrections.dmsoCorrections

    Methods in melting.otherCorrections.dmsoCorrections that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Musielski81DMSOCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Escara80DMSOCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Cullen76DMSOCorrection.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Ahsen01DMSOCorrection.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.otherCorrections.formamideCorrections

    Methods in melting.otherCorrections.formamideCorrections that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | FormamideLinearMethod.`correctMeltingResults(Environment environment)`
    `ThermoResult` | Blake96FormamideCorrection.`correctMeltingResults(Environment environment)`

  - ### Uses of ThermoResult in melting.patternModels

    Methods in melting.patternModels that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `abstract ThermoResult` | PatternComputation.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `abstract ThermoResult` | PatternComputation.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.cngPatterns

    Methods in melting.patternModels.cngPatterns that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Broda05CNGRepeats.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.cngPatterns with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Broda05CNGRepeats.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.cricksPair

    Methods in melting.patternModels.cricksPair that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Xia98.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | DecomposedInitiation.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | Turner06.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | CricksNNMethod.`computesHybridizationInitiation(Environment environment)` computes the enthalpy and entropy for the duplex initiation with the Environment 'environment'.
    `ThermoResult` | GlobalInitiation.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | Santalucia04.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | Santalucia96.`computesHybridizationInitiation(Environment environment)`
    `ThermoResult` | Breslauer86.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Freier86.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Xia98.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto96.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto95.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | CricksNNMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Tanaka04.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantalucia97.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia96.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.cricksPair with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Breslauer86.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Freier86.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Xia98.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto96.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto95.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | CricksNNMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Tanaka04.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantalucia97.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia96.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.InternalLoops

    Methods in melting.patternModels.InternalLoops that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Znosko071x2Loop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06InternalLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04InternalLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.InternalLoops with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Znosko071x2Loop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06InternalLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04InternalLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.longBulge

    Methods in melting.patternModels.longBulge that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Turner99_06LongBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04LongBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.longBulge with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Turner99_06LongBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04LongBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.longDanglingEnds

    Methods in melting.patternModels.longDanglingEnds that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Sugimoto02RNADanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SugimotoLongDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto02DNADanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.longDanglingEnds with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Sugimoto02RNADanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SugimotoLongDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Sugimoto02DNADanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.secondDanglingEnds

    Methods in melting.patternModels.secondDanglingEnds that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Serra05DoubleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra06DoubleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SecondDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.secondDanglingEnds with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Serra05DoubleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra06DoubleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SecondDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.singleBulge

    Methods in melting.patternModels.singleBulge that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Tanaka04SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner99_06SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | GlobalSingleBulgeLoopMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra07SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.singleBulge with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Tanaka04SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner99_06SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Santalucia04SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | GlobalSingleBulgeLoopMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra07SingleBulgeLoop.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.singleDanglingEnds

    Methods in melting.patternModels.singleDanglingEnds that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Bommarito00SingleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra06_08SingleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SingleDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.singleDanglingEnds with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Bommarito00SingleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra06_08SingleDanglingEnd.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | SingleDanglingEndMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.singleMismatch

    Methods in melting.patternModels.singleMismatch that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Znosko08mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | ZnoskoMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Watkins11mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Znosko07mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantaluciaPeyret97_98_99mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.singleMismatch with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Znosko08mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | ZnoskoMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Watkins11mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Znosko07mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner06mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantaluciaPeyret97_98_99mm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.specificAcids

    Methods in melting.patternModels.specificAcids that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Sugimoto01Hydroxyadenine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Asanuma05Azobenzene.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | McTigue04LockedAcid.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.specificAcids with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Sugimoto01Hydroxyadenine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Asanuma05Azobenzene.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | McTigue04LockedAcid.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.tandemMismatches

    Methods in melting.patternModels.tandemMismatches that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Turner99_06tanmm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantaluciaPeyret97_98_99tanmm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.tandemMismatches with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Turner99_06tanmm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | AllawiSantaluciaPeyret97_98_99tanmm.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in melting.patternModels.wobble

    Methods in melting.patternModels.wobble that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Santalucia05Inosine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | InosineNNMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner99Wobble.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Znosko07Inosine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra12Wobble.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `protected ThermoResult` | Turner99Wobble.`getGUThermoResult(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `protected ThermoResult` | Serra12Wobble.`getGUThermoResult(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

    Methods in melting.patternModels.wobble with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | Santalucia05Inosine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | InosineNNMethod.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Turner99Wobble.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Znosko07Inosine.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `ThermoResult` | Serra12Wobble.`computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `protected ThermoResult` | Turner99Wobble.`getGUThermoResult(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`
    `protected ThermoResult` | Serra12Wobble.`getGUThermoResult(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)`

  - ### Uses of ThermoResult in meltinggui

    Methods in meltinggui that return ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `ThermoResult` | MeltingCalculator.`fetchMeltingResults()` Computes and returns the results from MELTING.
    `ThermoResult` | MeltingCalculator.`getResults()` Returns the results from MELTING.

  - ### Uses of ThermoResult in meltinggui.dialogs

    Methods in meltinggui.dialogs with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `void` | ResultsPanel.`displayMeltingResults(ThermoResult results)` Displays the results from the MELTING program.

  - ### Uses of ThermoResult in meltinggui.frames

    Methods in meltinggui.frames with parameters of type ThermoResult
    Modifier and Type | Method and Description
    --- | ---
    `void` | MeltingFrame.`displayMeltingResults(ThermoResult results)` Displays the MELTING results.
    `void` | OuterFrame.`displayMeltingResults(ThermoResult results)` Displays MELTING results on the MELTING frame.