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$\displaystyle \begin{array}[t]{ccc}
  \Delta{}H&=&\delta{}h_\mathrm{initiation}+\sum \delta{}h_\mathrm{structure}\\
  \Delta{}S&=&\delta{}s_\mathrm{initiation}+\sum \delta{}s_\mathrm{structure}
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$\displaystyle \begin{array}[t]{ccc}
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$\displaystyle \begin{array}[t]{ccc}
  \Delta{}h_\mathrm{perfectly-matching}&=&\sum \delta{}h_\mathrm{Crick's pair}\\
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\begin{multline*}
\Delta H {\mbox{\texttt{AGCGA}} \choose \mbox{\texttt{TCGCT}}} = 
\Delta H {\mbox{\texttt{AG}} \choose \mbox{\texttt{TC}} } + 
\Delta H {\mbox{\texttt{GC}} \choose \mbox{\texttt{CG}} } +
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$ \Delta S$%
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$\displaystyle \begin{array}[t]{ccc}
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\Delta H {\mbox{\texttt{GCAGCAGCAGC}} \choose \mbox{\texttt{CGACGACGACG}}} = 
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$\displaystyle \begin{array}[t]{ccc}
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\begin{multline*}
\Delta H {\mbox{\texttt{ATC}} \choose \mbox{\texttt{TCG}}} = 
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\Delta H {\mbox{\texttt{TC}} \choose \mbox{\texttt{CG}} } \\
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\begin{multline*}
\Delta H {\mbox{\texttt{CAT}} \choose \mbox{\texttt{GAU}}} = 
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\Delta H {\mbox{\texttt{AT}} \choose \mbox{\texttt{AU}} } \\
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\begin{multline*}
\Delta h {(\mbox{single-mismatch})} = 
\delta{}h_\mathrm{mismatch-nucleotides} +
\delta{}h_\mathrm{mismatch-NN-interaction} +
\delta{}h_\mathrm{AU/GU} \\
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$ \delta{}h_\mathrm{mismatch-nucleotides}$%
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$ \delta{}h_\mathrm{mismatch-NN interaction}$%
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$ \delta{}h_\mathrm{AU/GU}$%
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\begin{multline*}
\Delta H {\mbox{\texttt{AUC}} \choose \mbox{\texttt{UUG}}} = 
\Delta H {\mbox{\texttt{U}} \choose \mbox{\texttt{U}} } + 
1 \times \Delta H {\mbox{\texttt{AU}} } +
\Delta H {\mbox{\texttt{RYY}} \choose \mbox{\texttt{YYR}} } \\
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\begin{multline*}
\Delta h {(\mbox{single-mismatch})} =
\delta{}h_\mathrm{initiation-loop-of-2} +
\delta{}h_\mathrm{per-AU/GU} +
\delta{}h_\mathrm{GG} +
\delta{}h_\mathrm{RU/YU}\\
\end{multline*}%
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$ \delta{}h_\mathrm{RU/YU}$%
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$ \delta{}h_\mathrm{per-AU/GU}$%
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\begin{multline*}
\Delta H {\mbox{\texttt{AUC}} \choose \mbox{\texttt{UUG}}} =
\Delta H {\mbox{initiation-loop-of-2}} + 
1 \times \Delta H {\mbox{\texttt{per-AU}} } +
\Delta H {\mbox{\texttt{RU}} \choose \mbox{\texttt{YU}} } \\
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\begin{multline*}
\Delta{}h_\mathrm{tandem-mismatch} =
\delta{}h_\mathrm{Crick's-pair-containing-tandem-mismatch} \\+ 
\sum \delta{}h_\mathrm{Crick's-pair-containing-single-mismatch}
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\begin{multline*}
\Delta H {\mbox{\texttt{ATGC}} \choose \mbox{\texttt{TCAG}}} = 
\Delta H {\mbox{\texttt{AT}} \choose \mbox{\texttt{TC}} } + 
\Delta H {\mbox{\texttt{TG}} \choose \mbox{\texttt{CA}} } + 
\Delta H {\mbox{\texttt{GC}} \choose \mbox{\texttt{AG}} } \\
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\begin{multline*}
\Delta h {(\mbox{tandem-mismatch})} = 
\delta{}h_\mathrm{tandem-mismatch+closing-base-pairs} \\
\end{multline*}%
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{\newpage\clearpage
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\begin{multline*}
\Delta H {\mbox{\texttt{G AC C}} \choose \mbox{\texttt{C CA G}}} = 
\Delta H {\mbox{\texttt{AC}} \choose \mbox{\texttt{CA}}} -adjacent-to-GC\\
\end{multline*}%
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{\newpage\clearpage
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\begin{multline*}
\Delta h {(\mbox{tandem-mismatch})} =
( \delta{}h_\mathrm{symmetric-duplex-1} +
\frac{\delta{}h_\mathrm{symmetric-duplex-2} )}{2} \\+
\delta{}h_\mathrm{GG} +
\delta{}h_\mathrm{p}\\
\end{multline*}%
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$ \delta{}h_\mathrm{symmetric-duplex-1}$%
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$ \delta{}h_\mathrm{p}$%
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\begin{multline*}
\Delta H {\mbox{\texttt{A GC C}} \choose \mbox{\texttt{U AU G}}} =
( \Delta H {\mbox{\texttt{A GA U}} \choose \mbox{\texttt{U AG A}}} + 
\Delta H {\mbox{\texttt{G UC C}} \choose \mbox{\texttt{C CU G}}} +
\Delta H {\mbox{\texttt{GA}} -adjacent-to- \mbox{\texttt{CU}} } \\
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\begin{multline*}
\Delta h {(\mbox{internal-loop(n)})} =
\delta{}h_\mathrm{asymmetry} +
\delta{}h_\mathrm{left-terminal-mismatch} \\+
\delta{}h_\mathrm{right-terminal-mismatch}\\
\Delta s {(\mbox{internal-loop(n)})} =
\delta{}s_\mathrm{loop(n)} +
\delta{}s_\mathrm{asymmetry} +
\delta{}s_\mathrm{left-terminal-mismatch} \\+
\delta{}s_\mathrm{right-terminal-mismatch}\\
\end{multline*}%
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$ \delta{}h_\mathrm{internal-loop(n)}$%
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$ \delta{}h_\mathrm{asymmetry}$%
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\begin{multline*}
\Delta H {\mbox{\texttt{G ACCG C}} \choose \mbox{\texttt{C CATA G}}} = 
\Delta H {\mbox{\texttt{GA}} \choose \mbox{\texttt{CC}}} +
\Delta H {\mbox{\texttt{GC}} \choose \mbox{\texttt{AG}}}\\
\Delta S {\mbox{\texttt{G ACCG C}} \choose \mbox{\texttt{C CATA G}}} = 
\Delta S {\mbox{loop of 8}} +
\Delta S {\mbox{\texttt{GA}} \choose \mbox{\texttt{CC}}} +
\Delta S {\mbox{\texttt{GC}} \choose \mbox{\texttt{AG}}}\\
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\begin{multline*}
\Delta h {(\mbox{internal-loop(n)})} =
\delta{}h_\mathrm{initiation-loop(n)} +
\delta{}h_\mathrm{per-AU/GU} +
(n1 - n2) \delta{}h_\mathrm{asymmetry} \\+
\delta{}h_\mathrm{first-non-canonical-pairs}\\
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$ \delta{}h_\mathrm{initiation-loop(n)}$%
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$ \delta{}h_\mathrm{per_AU/GU}$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5264}%
$ \delta{}h_\mathrm{first-non-canonical-pairs}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar884}%
\begin{multline*}
\Delta H {\mbox{\texttt{A ACCG C}} \choose \mbox{\texttt{U C-UA G}}} = 
\Delta H {\mbox{loop initiation(7)}} +
1 \times \Delta H {\mbox{\texttt{per-AU}}} +
(4 - 3)\Delta H {\mbox{asymmetry}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay5318}%
$\displaystyle \begin{array}[t]{ccc}
  \Delta{}h_\mathrm{pattern-composed-of-GU-base-pairs}&=&\sum \delta{}h_\mathrm{Crick's pair-containing-GU-base-pairs}\\
  \end{array}
$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar919}%
\begin{multline*}
\Delta H {\mbox{\texttt{GUC}} \choose \mbox{\texttt{CGG}}} = 
\Delta H {\mbox{\texttt{GU}} \choose \mbox{\texttt{CG}}} +
\Delta H {\mbox{\texttt{UC}} \choose \mbox{\texttt{GG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar928}%
\begin{multline*}
\Delta H {\mbox{\texttt{GUGC}} \choose \mbox{\texttt{CGUG}}} = 
\Delta H {\mbox{\texttt{GU}} \choose \mbox{\texttt{CG}}} +
\Delta H {\mbox{\texttt{UG}} \choose \mbox{\texttt{GU}}} +
\Delta H {\mbox{\texttt{UC}} \choose \mbox{\texttt{GG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay5358}%
$\displaystyle \begin{array}[t]{ccc}
  \Delta{}h_\mathrm{single-dangling-end}&=&\delta{}h_\mathrm{Crick's-pair-containing-the-dangling-end}\\
  \end{array}
$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar973}%
\begin{multline*}
\Delta H {\mbox{\texttt{GCTAG-}} \choose \mbox{\texttt{CGATCCA}}} =
\Delta H {\mbox{perfectly-matching-sequence}} +
\Delta H {\mbox{single-dangling-end}} \\
\Delta H {\mbox{\texttt{GCTAG-}} \choose \mbox{\texttt{CGATCCA}}} =
\Delta H {\mbox{\texttt{GCTAG}} \choose \mbox{\texttt{CGATCC}}} +
\Delta H {\mbox{\texttt{G-}} \choose \mbox{\texttt{CA}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1010}%
\begin{multline*}
\Delta{}h_\mathrm{double-dangling-end} =
\delta{}h_\mathrm{single-dangling-end} \\+ 
\delta{}h_\mathrm{bonus-second-dangling-end}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1019}%
\begin{multline*}
\Delta H {\mbox{\texttt{UAC}} \choose \mbox{\texttt{A--}}} =
\Delta H {\mbox{UA}} +
\Delta H {\mbox{bonus-pyrimidine-purine-pyrimidine}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1042}%
\begin{multline*}
\Delta{}h_\mathrm{long-dangling-end} =
\delta{}h_\mathrm{adjacent-terminal-base-pair+polyA} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1053}%
\begin{multline*}
\Delta H {\mbox{\texttt{GCTAG---}} \choose \mbox{\texttt{CGATCCAAA}}} =
\Delta H {\mbox{perfectly-matching-sequence}} +
\Delta H {\mbox{long-dangling-end}} \\
\Delta H {\mbox{\texttt{GCTAG---}} \choose \mbox{\texttt{CGATCCAAA}}} =
\Delta H {\mbox{\texttt{GCTAG}} \choose \mbox{\texttt{CGATCC}}} +
\Delta H {\mbox{\texttt{G---}} \choose \mbox{\texttt{CAAA}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1091}%
\begin{multline*}
\Delta h {(\mbox{single-bulge-loop})} =
\delta{}h_\mathrm{unpaired-nucleotid+adjacent-base-pairs} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1101}%
\begin{multline*}
\Delta H {\mbox{\texttt{GCTTAGGC}} \choose \mbox{\texttt{CGA-TCCG}}} =
\Delta H {\mbox{perfectly-matching-sequence-1}} +
\Delta H {\mbox{single-bulge-loop}} \\+
\Delta H {\mbox{perfectly-matching-sequence-2}}\\
\Delta H {\mbox{\texttt{GCTTAGGC}} \choose \mbox{\texttt{CGA-TCCG}}} =
\Delta H {\mbox{\texttt{GCT}} \choose \mbox{\texttt{CGA}}} +
\Delta H {\mbox{\texttt{TTA}} \choose \mbox{\texttt{A-T}}} +
\Delta H {\mbox{\texttt{AGGC}} \choose \mbox{\texttt{TCCG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1117}%
\begin{multline*}
\Delta h {(\mbox{single-bulge-loop})} =
\delta{}h_\mathrm{intervening-NN} +
\delta{}h_\mathrm{closing-AT-penalty}\\
\Delta s {(\mbox{single-bulge-loop})} =
\delta{}s_\mathrm{bulge-loop-of-1} +
\delta{}s_\mathrm{intervening-NN} +
\delta{}s_\mathrm{closing-AT-penalty}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5609}%
$ \delta{}h_\mathrm{bulge-loop-of-1}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5611}%
$ \delta{}h_\mathrm{intervening-NN}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5613}%
$ \delta{}h_\mathrm{closing-AT-penalty}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1138}%
\begin{multline*}
\Delta H {\mbox{\texttt{GAC}} \choose \mbox{\texttt{C-G}}} =
\Delta H {\mbox{\texttt{GC}} \choose \mbox{\texttt{CG}}} \\
\Delta S {\mbox{\texttt{GAC}} \choose \mbox{\texttt{C-G}}} =
\Delta S {\mbox{bulge-loop-of-1}} +
\Delta S {\mbox{\texttt{GC}} \choose \mbox{\texttt{CG}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1150}%
\begin{multline*}
\Delta h {(\mbox{single-bulge-loop})} =
\delta{}h_\mathrm{initiation-bulge-loop-of-1} +
\delta{}h_\mathrm{intervening-NN} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5620}%
$ \delta{}h_\mathrm{initiation-bulge-loop-of-1}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1162}%
\begin{multline*}
\Delta H {\mbox{\texttt{GAC}} \choose \mbox{\texttt{C-G}}} =
\Delta H {\mbox{initiation-bulge-loop-of-1}} +
\Delta H {\mbox{\texttt{GC}} \choose \mbox{\texttt{CG}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1195}%
\begin{multline*}
\Delta h {(\mbox{long-bulge-loop})} =
\delta{}h_\mathrm{closing-AT-penalty}\\
\Delta s {(\mbox{single-bulge-loop})} =
\delta{}s_\mathrm{bulge-loop-of-n} +
\delta{}s_\mathrm{closing-AT-penalty}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5702}%
$ \delta{}h_\mathrm{bulge-loop-of-n}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1210}%
\begin{multline*}
\Delta H {\mbox{\texttt{GACGC}} \choose \mbox{\texttt{C---G}}} =
0
\Delta S {\mbox{\texttt{GACGC}} \choose \mbox{\texttt{C---G}}} =
\Delta S {\mbox{bulge-loop-of-3}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1218}%
\begin{multline*}
\Delta h {(\mbox{long-bulge-loop})} =
\delta{}h_\mathrm{initiation-bulge-loop-of-n} \\+
\delta{}h_\mathrm{per-AU/GU-penalty}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5709}%
$ \delta{}h_\mathrm{initiation-bulge-loop-of-n}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5711}%
$ \delta{}h_\mathrm{per-AU/GU-penalty}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1230}%
\begin{multline*}
\Delta H {\mbox{\texttt{AACGC}} \choose \mbox{\texttt{U---G}}} =
\Delta H {\mbox{initiation-bulge-loop-of-3}} +
1 \times \Delta H {\mbox{per-AU-penalty}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay5750}%
$\displaystyle \begin{array}[t]{ccc}
  \Delta{}h_\mathrm{pattern-containing-inosine-bases}&=&\sum
  \delta{}h_\mathrm{Crick's pair-containing-inosine-bases}\\
  \end{array}
$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1257}%
\begin{multline*}
\Delta H {\mbox{\texttt{AIC}} \choose \mbox{\texttt{TAG}}} = 
\Delta H {\mbox{\texttt{AI}} \choose \mbox{\texttt{TA}}} +
\Delta H {\mbox{\texttt{IC}} \choose \mbox{\texttt{AG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1266}%
\begin{multline*}
\Delta H {\mbox{\texttt{GIAC}} \choose \mbox{\texttt{CAIG}}} = 
\Delta H {\mbox{\texttt{GI}} \choose \mbox{\texttt{CA}}} +
\Delta H {\mbox{\texttt{IA}} \choose \mbox{\texttt{AI}}} +
\Delta H {\mbox{\texttt{AC}} \choose \mbox{\texttt{IG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1301}%
\begin{multline*}
  \Delta{}h_\mathrm{pattern-containing-azobenzene} =
  \delta{}h_\mathrm{Crick's pair-containing-azobenzene+adjacent-base-pairs}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1311}%
\begin{multline*}
\Delta H {\mbox{\texttt{GCTX\_CAGGC}} \choose \mbox{\texttt{CGATCCG}}} =
\Delta H {\mbox{perfectly-matching-sequence-1}} +
\Delta H {\mbox{azobenzene}} \\+
\Delta H {\mbox{perfectly-matching-sequence-2}}\\
\Delta H {\mbox{\texttt{GCTX\_CAGGC}} \choose \mbox{\texttt{CGATCCG}}} =
\Delta H {\mbox{\texttt{GCT}} \choose \mbox{\texttt{CGA}}} +
\Delta H {\mbox{\texttt{TX\_CA}} \choose \mbox{\texttt{AT}}} +
\Delta H {\mbox{\texttt{AGGC}} \choose \mbox{\texttt{TCCG}}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5850}%
$ ] = 2\cdot{}10^{-6}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1343}%
\begin{multline*}
\Delta{}h_\mathrm{pattern-containing-hydroxyadenine} =
\sum \delta{}h_\mathrm{Crick's pair-with-AT-base-pair} \\+
\delta{}h_\mathrm{hydroxyadenine-increment}
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1352}%
\begin{multline*}
\Delta H {\mbox{\texttt{GA*C}} \choose \mbox{\texttt{CCG}}} = 
\Delta H {\mbox{\texttt{GA}} \choose \mbox{\texttt{CT}}} +
\Delta H {\mbox{\texttt{AC}} \choose \mbox{\texttt{CG}}} \\+
\Delta H {\mbox{increment-for-GA*C/CCG}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1379}%
\begin{multline*}
\Delta{}h_\mathrm{pattern-containing-Locked-Nucleic-Acid} =
\sum \delta{}h_\mathrm{Crick's pair-without-Locked-Nucleic-Acid} \\+
\sum \delta{}h_\mathrm{increment-Crick's pair-with-Locked-Nucleic-Acid}
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1388}%
\begin{multline*}
\Delta H {\mbox{\texttt{GALC}} \choose \mbox{\texttt{CTG}}} = 
\Delta H {\mbox{\texttt{GA}} \choose \mbox{\texttt{CT}}} +
\Delta H {\mbox{\texttt{AC}} \choose \mbox{\texttt{CG}}} \\+
\Delta H {\mbox{increment-for-GAL/CT}} +
\Delta H {\mbox{increment-for-ALC/TG}}\\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{paragraph}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1400}%
\begin{multline*}
\Delta H {\mbox{\texttt{GALC}} \choose \mbox{\texttt{CTG}}} = 
\Delta H {\mbox{\texttt{GAL}} \choose \mbox{\texttt{CT}}} +
\Delta H {\mbox{\texttt{ALC}} \choose \mbox{\texttt{CG}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5926}%
$ ] = 5\cdot{}10^{-6}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1427}%
\begin{multline*}
\Delta H {\mbox{\texttt{GALCLC}} \choose \mbox{\texttt{CTGG}}} = 
\Delta H {\mbox{\texttt{GAL}} \choose \mbox{\texttt{CT}}} +
\Delta H {\mbox{\texttt{ALCL}} \choose \mbox{\texttt{TG}}} +
\Delta H {\mbox{\texttt{CLC}} \choose \mbox{\texttt{GG}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmldisplayA{multlinestar1455}%
\begin{multline*}
\Delta H {\mbox{\texttt{GALCLGLC}} \choose \mbox{\texttt{CTTCG}}} = 
\Delta H {\mbox{\texttt{GAL}} \choose \mbox{\texttt{CT}}} +
\Delta H {\mbox{\texttt{ALCL}} \choose \mbox{\texttt{TT}}} +
\Delta H {\mbox{\texttt{CLGL}} \choose \mbox{\texttt{TC}}} 
\Delta H {\mbox{\texttt{GLC}} \choose \mbox{\texttt{CG}}} \\
\end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5988}%
$ \frac{\Delta{}H}{\Delta{}S + R \ln (C_T/F)} - 273.15 $%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline5990}%
$ ^+$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6004}%
$ \frac{\Delta{}H}{\Delta{}S} - 273.15 $%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6019}%
$ C_{\mbox{max}} - C_{\mbox{min}}/2$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6021}%
$ C_{\mbox{max}}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6023}%
$ C_{\mbox{min}}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6027}%
$ C_{\mbox{max}} \gg C_{\mbox{min}}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6031}%
$ C_T$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6039}%
$ C_T/4$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6085}%
$ ^{2+}]$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6088}%
$\displaystyle \Delta{}S=\Delta{}S_{[\mbox{Na}^+]=1\;\mathrm{M}}+0.847 \times (N - 1) \times \log [\mbox{Na}^+]   
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6090}%
$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+(7.95 - 3.06 \times \chi_{GC}) \times \ln [\mbox{Na}^+]  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_inline6092}%
$ \chi_{GC}$%
\lthtmlinlinemathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6094}%
$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+ (8.75 - 2.83 \times \chi_{GC}) \times \ln [\mbox{Na}^+]  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6098}%
$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+ (-3.22 \times \chi_{GC} - 6.39) \times \ln [\mbox{Na}^+]  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6102}%
$\displaystyle \frac{1}{Tm}=\frac{1}{Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}}+ (3.85 \times \chi_{GC} - 6.18) \times \frac{1}{100000} \times \ln [\mbox{Na}^+]  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6106}%
$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+ (-4.62 \times \chi_{GC} + 4.52) \times \ln [\mbox{Na}^+] 
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6108}%
$\displaystyle - 0.985 \times \ln [($%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6109}%
$\displaystyle ^+)^2]  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1607}%
\begin{multline*}
 \frac{1}{Tm}=\frac{1}{Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}}+ (4.29 \times \chi_{GC} - 3.95) \times 
 \end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmldisplayA{multlinestar1615}%
\begin{multline*}
 \frac{1}{100000} \times \ln [\mbox{Na}^+] +
 9.40 \times \frac{1}{1000000} \times \ln [\mbox{Na}^+]
 \end{multline*}%
\lthtmldisplayZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6117}%
$\displaystyle 12.5  \log [$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6118}%
$\displaystyle ^+]   
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6120}%
$\displaystyle \Delta{}S=\Delta{}S_{[\mbox{Na}^+]=1\;\mathrm{M}}+ 0.368 * (N - 1) \times \ln [\mbox{Na}^+]   
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6122}%
$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+ 16.6 \times \log [\mbox{Na}^+]   
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6124}%
$\displaystyle \Delta{}S=\Delta{}S_{[\mbox{Na}^+]=1\;\mathrm{M}}- 3.22 \times (N - 1) \times g1  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6126}%
$\displaystyle g1=a1 + \frac{b1}{N}  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6128}%
$\displaystyle a1= -0.07 \times \ln [$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6129}%
$\displaystyle ^+] + 0.012 \times (\ln [$%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6130}%
$\displaystyle ^{2+}])^2  
 $%
\lthtmlindisplaymathZ
\lthtmlcheckvsize\clearpage}

{\newpage\clearpage
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$\displaystyle b1= 0.013 \times (\ln [$%
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{\newpage\clearpage
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$\displaystyle a1= -0.075 \times \ln [$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6143}%
$\displaystyle b1= 0.018 \times (\ln [$%
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{\newpage\clearpage
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$\displaystyle Tm=Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}+ 16.6  \log \frac{[\mbox{Na}^+]}{1 + 0.7 [\mbox{Na}^+]} + 3.85    
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\stepcounter{subsubsection}
{\newpage\clearpage
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$\displaystyle \frac{1}{Tm_{[\mbox{Mg}^{2+}]}} = \frac{1}{Tm_{[\mbox{Na}^+]=1\;\mathrm{M}}} + a
 - b (\ln [\mbox{Mg}^{2+}]) + \chi_{GC} (c + d \ln [\mbox{Mg}^{2+}]) + \frac{1}{2 (Nbp-1)} 
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$\displaystyle (-e + f \ln [$%
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$\displaystyle ^{2+}] + g (\ln [$%
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$\displaystyle ^{2+}])^{2}])
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{\newpage\clearpage
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$ 10^{-5}$%
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{\newpage\clearpage
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$ 10^{-6}$%
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{\newpage\clearpage
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$ 10^{-4}$%
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{\newpage\clearpage
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$\displaystyle \Delta{}S=\Delta{}S_{[\mbox{Na}^+]=1\;\mathrm{M}}- 3.22 \times (N - 1) \times g2  
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$\displaystyle g2=a2 + \frac{b2}{(N)^2}  
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$\displaystyle a2= 0.02 \times \ln [$%
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{\newpage\clearpage
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$\displaystyle ^{2+}] + 0.0068 \times (\ln [$%
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{\newpage\clearpage
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$\displaystyle b2= 1.18 \times \ln [$%
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{\newpage\clearpage
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$\displaystyle ^{2+}] + 0.344 \times (\ln [$%
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$\displaystyle a2= \frac{-0.6}{N} + 0.025 \times \ln [$%
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{\newpage\clearpage
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$\displaystyle b2= \ln [$%
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$\displaystyle ^{2+} + 0.38 \times (\ln [$%
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\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6366}%
$\displaystyle a = 3.92\cdot{}10^{-5} (0.843 - 0.352 [$%
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{\newpage\clearpage
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$\displaystyle ^+]^{0.5} \ln [$%
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$\displaystyle ^+]) 
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$\displaystyle d = 1.42\cdot{}10^{-5} (1.279 - 4.03\cdot{}10^{-3} \ln [$%
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$\displaystyle ^+] -
 8.03\cdot{}10^{-3} \ln [$%
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$\displaystyle g = 8.31\cdot{}10^{-5} (0.486 - 0.258 \ln [$%
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{\newpage\clearpage
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$\displaystyle ^+] + 5.25\cdot{}10^{-3}
 \ln [$%
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$\displaystyle ^+]^{3} 
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$\displaystyle \Delta{}S=\Delta{}S_{[\mbox{Na}^+]=1\;\mathrm{M}}- 3.22 \times ((N - 1) \times (x1 \times g1 + x2 \times g2) + g12))  
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$\displaystyle g12 = -0.6 \times x1 \times x2 \times \ln [$%
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{\newpage\clearpage
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$\displaystyle ^+] \times \frac{\ln [(\frac{1}{x1} - 1) \times \mbox{Na}^+]}{N}  
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$\displaystyle x1 = \frac{[\mbox{Na}^+]}{(\mbox{Na}^+ + (\frac{8.1 - 32.4}{N}) \times (5.2 - \ln [\mbox{Na}^+]) \times \mbox{Mg}^{2+})}  
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$\displaystyle x2= 1-x1  
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$\displaystyle [$%
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$\displaystyle ^+] = [$%
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{\newpage\clearpage
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$\displaystyle ^+] + [$%
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$ ^{2+}]^0.5$%
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{\newpage\clearpage
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$\displaystyle ^+]+\frac{[\mbox{Tris}^+]}{2}+3.79 \sqrt{[\mbox{Mg}^{2+}] - [\mbox{dNTP}]}
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{\newpage\clearpage
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$\displaystyle ^+]+\frac{[\mbox{Tris}^+]}{2}+4 \sqrt{[\mbox{Mg}^{2+}] - [\mbox{dNTP}]}
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{\newpage\clearpage
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$\displaystyle ^+]+\frac{[\mbox{Tris}^+]}{2}+3.3 \sqrt{[\mbox{Mg}^{2+}] - [\mbox{dNTP}]}
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\stepcounter{subsection}
{\newpage\clearpage
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$ 7\pm 1$%
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\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6499}%
$\displaystyle Tm=Tm(DMSO=0)-0.75 \times DMSO
  $%
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{\newpage\clearpage
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$\displaystyle Tm=Tm(DMSO=0)-0.5 \times DMSO
  $%
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{\newpage\clearpage
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$\displaystyle Tm=Tm(DMSO=0)-0.675 \times DMSO
  $%
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{\newpage\clearpage
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$\displaystyle Tm=Tm(DMSO=0)-0.6 \times DMSO
  $%
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\stepcounter{subsubsection}
{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6559}%
$\displaystyle Tm=Tm(formamide=0)+ (0.453 \times \chi_{GC} - 2.88) \times formamide
  $%
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{\newpage\clearpage
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$\displaystyle Tm=Tm(formamide=0)-0.65 \times formamide
  $%
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\stepcounter{subsection}
{\newpage\clearpage
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$ <$%
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{\newpage\clearpage
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$\displaystyle Tm = 80.4 + 0.345 \times \%GC + \log[$%
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{\newpage\clearpage
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$\displaystyle ^+] \times (17.0 - 0.135 \times \%GC) - \frac{550}{size}
$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6613}%
$\displaystyle Tm = 69.3 + 0.41 \times \%GC - \frac{650}{size}
$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6615}%
$\displaystyle Tm = 69.3 + 0.41 \times \%GC - \frac{535}{size}
$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6617}%
$\displaystyle Tm = 81.5 + 16.6 \times \log[$%
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{\newpage\clearpage
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$\displaystyle ^+] + 0.41 \times \%GC - \frac{675}{size}
$%
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{\newpage\clearpage
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$\displaystyle Tm = 87.16 + 0.345 \times \%GC + \log[$%
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{\newpage\clearpage
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$\displaystyle ^+] \times (20.17 - 0.066 \times \%GC)
$%
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{\newpage\clearpage
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$\displaystyle Tm = 77.1 + 11.7 \times \log[$%
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{\newpage\clearpage
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$\displaystyle ^+] + 0.41 \times \%GC - \frac{528}{size}
$%
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{\newpage\clearpage
\lthtmlinlinemathA{tex2html_wrap_indisplay6626}%
$\displaystyle Tm = 81.5 + 16.6\log\frac{[\mbox{Na}^+]}{1+0.7[\mbox{Na}^+]} + 0.41\% GC - \frac{500}{size} 
- \%Mismatching
$%
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{\newpage\clearpage
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$\displaystyle Tm = 78 + 16.6\log\frac{[\mbox{Na}^+]}{1+0.7[\mbox{Na}^+]} + 0.7\% GC - \frac{500}{size}
- \%Mismatching
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{\newpage\clearpage
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$\displaystyle Tm = 67 + 16.6\log\frac{[\mbox{Na}^+]}{1+0.7[\mbox{Na}^+]} + 0.8\% GC - \frac{500}{size}
- \%Mismatching
$%
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\stepcounter{section}
\stepcounter{section}
\stepcounter{section}
\stepcounter{section}
\stepcounter{section}

\end{document}
