# STOCKHOLM 1.0
#=GF ID   XYPPX
#=GF AC   PF02162.8
#=GF DE   XYPPX repeat
#=GF PI   Rhodopsin_C;
#=GF AU   Mian N, Bateman A
#=GF SE   IPR000216
#=GF GA   14.30 0.70; 10.00 0.00;
#=GF TC   14.40 0.70; 10.00 0.00;
#=GF NC   14.20 4.00; 9.70 2.00;
#=GF TP   Repeat
#=GF BM   hmmbuild -F HMM_ls SEED
#=GF BM   hmmcalibrate --seed 0 HMM_ls
#=GF BM   hmmbuild -f -F HMM_fs SEED
#=GF BM   hmmcalibrate --seed 0 HMM_fs
#=GF AM   globalfirst
#=GF DR   PRINTS; PR00239;
#=GF DC   The following Pfam-B family may contain sequences that according to Prodom
#=GF DC   are members of this Pfam-A family.
#=GF DR   PFAMB; PB146642;
#=GF DR   INTERPRO; IPR006031;
#=GF CC   This repeat is found in a wide variety of proteins and
#=GF CC   generally consists of the motif XYPPX where X can be any amino
#=GF CC   acid. The family includes annexin VII Swiss:P24639, the
#=GF CC   carboxy tail of certain rhodopsins Swiss:Q17094. This family
#=GF CC   also includes plaque matrix proteins, however this motif is
#=GF CC   embedded in a ten residue repeat in Swiss:Q25460. The molecular
#=GF CC   function of this repeat is unknown. It is also not clear is all
#=GF CC   the members of this family share a common evolutionary
#=GF CC   ancestor due to its short length and biased amino acid
#=GF CC   composition.
#=GF SQ   7
#=GS OPSD_SEPOF/451-455  AC O16005.1
#=GS OPSD_SEPOF/441-445  AC O16005.1
#=GS OPSD_SEPOF/424-428  AC O16005.1
#=GS OPSD_OCTDO/406-410  AC P09241.1
#=GS OPSD_SEPOF/403-407  AC O16005.1
#=GS OPSD_SEPOF/412-416  AC O16005.1
#=GS OPSD_TODPA/387-391  AC P31356.2
OPSD_SEPOF/451-455             AAPPQ
OPSD_SEPOF/441-445             GAPPQ
OPSD_SEPOF/424-428             GYPPA
OPSD_OCTDO/406-410             AYPPP
OPSD_SEPOF/403-407             GYPPP
OPSD_SEPOF/412-416             GYPPQ
OPSD_TODPA/387-391             AYPPQ
#=GC seq_cons                  uYPPt
//
