# STOCKHOLM 1.0
#  Structures, alignment from deWachter database
#  Reference coord system imposes E. coli coordinates

Esccol.BPG         ---AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGC
#=GR Esccol.BPG SS ...................<<<<......<<<<.<<<<<<.<<<<<<<<<
Vibcho.BPG         ----------AGAGUUUGAUNNUGGCUCAGAUUGAACGCUGGCGGCAGGC
#=GR Vibcho.BPG SS ...................<<<<......<<<<.<<<<<<.<<<<<<<<<
Haeinf.BPG         NNNNAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGC
#=GR Haeinf.BPG SS ...................<<<<......<<<<.<<<<<<.<<<<<<<<<
Yerpes.BPG         ----------NNNNNNNNNNNNNGGCUCAGAUUGAACGCUGGCGGCAGGC
#=GR Yerpes.BPG SS ...........<<<<<.......>>>>>.<<<<.<<<<<<.<<<<<<<<<
#=GC SS_cons       ...................<<<<......<<<<.<<<<<<.<<<<<<<<<
#=GC RF            ---xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CUAACACAUGCAAGUCGAACGGUAACAG-GAAGAAGCUUGCUUCUUU-GC
#=GR Esccol.BPG SS ....<<<.<<<..<<<..<<.<<..<<<.<<<<<<<....>>>>>>>..>
Vibcho.BPG         CUAACACAUGCAAGUCGAGCGGCAGCACAGAGGAA-CUUG-UUCCUUGGG
#=GR Vibcho.BPG SS ....<<<.<<<..<<<..<<.<<..<<<.<<<<<<......>>>>>>..>
Haeinf.BPG         UUAACACAUGCAAGUCGAACGGUAGCAG-GAGAAAGCUUGCUUUCUU-GC
#=GR Haeinf.BPG SS ....<<<.<<<..<<<..<<.<<..<<<.<<<<<<<....>>>>>>>..>
Yerpes.BPG         CUAACACAUGCAAGUCGAGCGGCAGCGGGAAGUAG-UUUA-CUACUUUGC
#=GR Yerpes.BPG SS ....<<<.<<<..<<<..<<..<..<<<<<<<<<<......>>>>>>>.>
#=GC SS_cons       ....<<<.<<<..<<<..<<.<<..<<<.<<<<<<<....>>>>>>>..>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxx-xxxxxxxxxxxxxxxxxx-xx

Esccol.BPG         UGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGG
#=GR Esccol.BPG SS >>>>..>>>>>......<<<.......<<<<<<..<<...<<<<<<<.<<
Vibcho.BPG         UGGCGAGCGGCGGACGGGUGAGUAAUGCCUGGGAAAUUGCCCGGUAGAGG
#=GR Vibcho.BPG SS >>>>..>>>>>......<<<.......<<<<<<..<<...<<<<<<<.<<
Haeinf.BPG         UGACGAGUGGCGGACGGGUGAGUAAUGCUUGGGAAUCUGGCUUAUGGAGG
#=GR Haeinf.BPG SS >>>>..>>>>>......<<<.......<<<<<<..<<...<<<<<<<.<<
Yerpes.BPG         CGGCGAGCGGCGGACGGGUGAGUAAUGUCUGGGGAUCUGCCUGAUGGAGG
#=GR Yerpes.BPG SS >>>...>>>>>......<<<.......<<<<<<..<<...<<<<<<<.<<
#=GC SS_cons       >>>>..>>>>>......<<<.......<<<<<<..<<...<<<<<<<.<<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCA
#=GR Esccol.BPG SS <<.....<<<<<<....>>>>>>......>>>>.....<<<....>>>..
Vibcho.BPG         GGGAUAACCAUUGGAAACGAUGGCUAAUACCGCAUAACCUCGCAAGAGCA
#=GR Vibcho.BPG SS <<.....<<<<<<....>>>>>>......>>>>.....<<<....>>>..
Haeinf.BPG         GGGAUAACGACGGGAAACUGUCGCUAAUACCGCGUAUUAUCGGAAGAUGA
#=GR Haeinf.BPG SS <<.....<<<<<<....>>>>>>......>>>>.....<<<....>>>..
Yerpes.BPG         GGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUGACCUCGCAAGAGCA
#=GR Yerpes.BPG SS <<.....<<<<<<....>>>>>>......>>>>.....<<<....>>>..
#=GC SS_cons       <<.....<<<<<<....>>>>>>......>>>>.....<<<....>>>..
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUU
#=GR Esccol.BPG SS ..<<<<<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>.<<<<<<
Vibcho.BPG         AAGCAGGGGACCUUCGGGCCUUGCGCUACCGGAUAUGCCCAGGUGGGAUU
#=GR Vibcho.BPG SS ..<<<<<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>.<<<<<<
Haeinf.BPG         AAGUGCGGGACUGAGAGGCCGCAUGCCAUAGGAUGAGCCCAAGUGGGAUU
#=GR Haeinf.BPG SS ..<<<<<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>.<<<<<<
Yerpes.BPG         AAGUGGGGGACCUUAGGGCCUCACGCCAUCGGAUGAACCCAGAUGGGAUU
#=GR Yerpes.BPG SS ..<<<<<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>.<<<<<<
#=GC SS_cons       ..<<<<<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>.<<<<<<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUC
#=GR Esccol.BPG SS .<<<..<<<<<<<<<<...>>>>>>>>>>>>>...>>>>>>..<<<<<<<
Vibcho.BPG         AGCUAGUUGGUGAGGUAAGGGCUCACCAAGGCGACGAUCCCUAGCUGGUC
#=GR Vibcho.BPG SS .<<<..<<<<<<<<<<...>>>>>>>>>>>>>...>>>>>>..<<<<<<<
Haeinf.BPG         AGGUAGUUGGUGGGGUAAAUGCCUACCAAGCCUGCGAUCUCUAGCUGGUC
#=GR Haeinf.BPG SS .<<<..<<<<<<<<.......>>>>>>>>>>>...>>>>>>..<<<<<<<
Yerpes.BPG         AGCUAGUAGGUGGGGUAAUGGCUCACCUAGGCGACGAUCCCUAGCUGGUC
#=GR Yerpes.BPG SS .<<<..<<<<<<<<<<...>>>>>>>>>>>>>...>>>>>>..<<<<<<<
#=GC SS_cons       .<<<..<<<<<<<<<<...>>>>>>>>>>>>>...>>>>>>..<<<<<<<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         UGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUAC
#=GR Esccol.BPG SS <....>>>>...>>>>>>>.<<<<<<<........>>>>>>>.<<<<...
Vibcho.BPG         UGAGAGGAUGAUCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUAC
#=GR Vibcho.BPG SS <....>>>>...>>>>>>>.<<<<<<<........>>>>>>>.<<<<...
Haeinf.BPG         UGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUAC
#=GR Haeinf.BPG SS <....>>>>...>>>>>>>.<<<<<<<........>>>>>>>.<<<<...
Yerpes.BPG         UGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUAC
#=GR Yerpes.BPG SS <....>>>>...>>>>>>>.<<<<<<<........>>>>>>>.<<<<...
#=GC SS_cons       <....>>>>...>>>>>>>.<<<<<<<........>>>>>>>.<<<<...
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGC
#=GR Esccol.BPG SS .>>>>...>>>>>>........<<<<...<<<<<....>>>>>.>>>>>>
Vibcho.BPG         GGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGC
#=GR Vibcho.BPG SS .>>>>...>>>>>>........<<<<...<<<<<....>>>>>.>>>>>>
Haeinf.BPG         GGGAGGCAGCAGUGGGGAAUAUUGCGCNAUGGGGGGAACCCUGACGCAGC
#=GR Haeinf.BPG SS .>>>>...>>>>>>........<<<<...<<<<<....>>>>>.>>>>>>
Yerpes.BPG         GGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGC
#=GR Yerpes.BPG SS .>>>>...>>>>>>........<<<<...<<<<<....>>>>>.>>>>>>
#=GC SS_cons       .>>>>...>>>>>>........<<<<...<<<<<....>>>>>.>>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGG
#=GR Esccol.BPG SS >.>>>>>>..<<<<......<<<<....>>>>.....>>>>.<<<<<<<<
Vibcho.BPG         CAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGUAG
#=GR Vibcho.BPG SS >.>>>>>>..<<<<......<<<<....>>>>.....>>>>.<<<<<<<<
Haeinf.BPG         CAUGCCGCGUGAAUGAAGAAGGCCUUCGGGUUGUAAAGUUCUUUCGGUAU
#=GR Haeinf.BPG SS >.>>>>>>..<<<<......<<<<....>>>>.....>>>>.<<<<<<<<
Yerpes.BPG         CAUGCCGCGUGUGUGAAGAAGGCCUUCGGGUUGUAAAGCACUUUCAGCGA
#=GR Yerpes.BPG SS >.>>>>>>..<<<<......<<<<....>>>>.....>>>>.<<<<<<<<
#=GC SS_cons       >.>>>>>>..<<<<......<<<<....>>>>.....>>>>.<<<<<<<<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGA
#=GR Esccol.BPG SS <.....<<<<<<<<<<<.......>>>>>>>>>>>.......>>>>>>>>
Vibcho.BPG         GGAGGAAGGUGGUUAAGUUAAUACCUUAAUCAUUUGACGUUACCUACAGA
#=GR Vibcho.BPG SS <.....<<<<<<<<<<<.......>>>>>>>>>>>.......>>>>>>>>
Haeinf.BPG         UGAGGAAGGUUGAUGUGUUAAUAGCACAUCAAAUUGACGUUAAAUACAGA
#=GR Haeinf.BPG SS <.....<<<<<<<<<<<.......>>>>>>>>>>>.......>>>>>>>>
Yerpes.BPG         GGAGGAAGGGGUUGAGUUUAAUACGCUCAAUCAUUGACGUUACUCGCAGA
#=GR Yerpes.BPG SS <.....<<<<<<<<<<<.......>>>>>>>>>>>.......>>>>>>>>
#=GC SS_cons       <.....<<<<<<<<<<<.......>>>>>>>>>>>.......>>>>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGC
#=GR Esccol.BPG SS >...<<<<<......<<<<<....................>>>>>>>>>>
Vibcho.BPG         AGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGC
#=GR Vibcho.BPG SS >...<<<<<......<<<<<....................>>>>>>>>>>
Haeinf.BPG         AGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGNGUGC
#=GR Haeinf.BPG SS >...<<<<<......<<<<<....................>>>>>>>>>>
Yerpes.BPG         AGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGC
#=GR Yerpes.BPG SS >...<<<<<......<<<<<....................>>>>>>>>>>
#=GC SS_cons       >...<<<<<......<<<<<....................>>>>>>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUA
#=GR Esccol.BPG SS .>>>>>>>>>>.......<<<<<<<......<<<<...<<<<<<<<<<<.
Vibcho.BPG         AAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCAUGCAGGUGGUUUGUUA
#=GR Vibcho.BPG SS .>>>>>>>>>>.......<<<<<<<......<<<<...<<<<<<<<<<<.
Haeinf.BPG         GAGCGUUAAUCGGAAUAACUGGGCGUAAAGGGCACGCAGGCGGUUAUUUA
#=GR Haeinf.BPG SS .>>>>>>>>>>.......<<<<<<<......<<<<<..<<<<<<<<<<<.
Yerpes.BPG         AAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUA
#=GR Yerpes.BPG SS .>>>>>>>>>>.......<<<<<<<......<<<<...<<<<<<<<<<<.
#=GC SS_cons       .>>>>>>>>>>.......<<<<<<<......<<<<...<<<<<<<<<<<.
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGA-ACUGCAUCUGAUACU
#=GR Esccol.BPG SS <<<<<<<<<.......<<<<<<.....>>>>>>......>>>>>>>..>>
Vibcho.BPG         AGUCAGAUGUGAAAGCCCUGGGCUCAACCUAGGAAU-CGCAUUUGAAACU
#=GR Vibcho.BPG SS <<<<<<<<<.......<<<<<<.....>>>>>>......>>>>>>>..>>
Haeinf.BPG         AGUGAGGUGUGAAAGCCCCGGGCUUAACCUGGGNAU-UGCAUUUCAGACU
#=GR Haeinf.BPG SS <<<<<<<<<.......<<<<<<.....>>>>>>......>>>>>>>..>>
Yerpes.BPG         AGUCAGAUGUGAAAUCCCCGCGCUUAACGUGGGAAC-UGCAUUUGAAACU
#=GR Yerpes.BPG SS <<<<<<<<<.......<<<<<<.....>>>>>>......>>>>>>>..>>
#=GC SS_cons       <<<<<<<<<.......<<<<<<.....>>>>>>......>>>>>>>..>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-xxxxxxxxxxxxxxx

Esccol.BPG         GGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGA
#=GR Esccol.BPG SS >>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<....
Vibcho.BPG         GACAAGCUAGAGUACUGUAGAGGGGGGUAGAAUUUCAGGUGUAGCGGUGA
#=GR Vibcho.BPG SS >>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<....
Haeinf.BPG         GGGUAACUAGAGUACUUUAGGGAGGGGUAGAAUUCCACGUGUAGCGGUGA
#=GR Haeinf.BPG SS >>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<....
Yerpes.BPG         GGCAAGCUAGAGUCUUGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGA
#=GR Yerpes.BPG SS >>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<....
#=GC SS_cons       >>>>>>>...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<....
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGAC
#=GR Esccol.BPG SS ..>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>
Vibcho.BPG         AAUGCGUAGAGAUCUGAAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGAC
#=GR Vibcho.BPG SS ..>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>
Haeinf.BPG         AAUGCGUAGAGAUGUGGAGGAAUACCGAAGGCGAAGGCAGCCCCUUGGGA
#=GR Haeinf.BPG SS ..>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>
Yerpes.BPG         AAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGAC
#=GR Yerpes.BPG SS ..>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>
#=GC SS_cons       ..>>>......>>>>>>>>...........<<....>>.>>>>>>>..>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUA
#=GR Esccol.BPG SS >.>>>>>..>>>>...>>>>....<<<<<<<...<...<<<<........
Vibcho.BPG         AGAUACUGACACUCAGAUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUA
#=GR Vibcho.BPG SS >>.>>>>..>>>>...>>>>....<<<<<<<...<...<<<<........
Haeinf.BPG         AUGUACUGACGCUCAUGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUA
#=GR Haeinf.BPG SS >.>>>>>..>>>>..>>>>>....<<<<<<<...<...<<<<........
Yerpes.BPG         AAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUA
#=GR Yerpes.BPG SS >>.>>>>..>>>>...>>>>....<<<<<<<...<...<<<<........
#=GC SS_cons       >.>>>>>..>>>>...>>>>....<<<<<<<...<...<<<<........
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUG
#=GR Esccol.BPG SS .>>>>...>>>>>>>>..........<<<<<<<<<<<<<<<<<<<<....
Vibcho.BPG         CCCUGGUAGUCCACGCCGUAAACGAUGUCUACUUGGAGGUUGUGCCCUAG
#=GR Vibcho.BPG SS .>>>>...>>>>>>>>..........<<<<<<<<<<<<<<<<<<<<....
Haeinf.BPG         CCCUGGUAGUCCACGCUGUAAACGCUGUCGAUUUGGGGGUUGGGGUUUA-
#=GR Haeinf.BPG SS .>>>>...>>>>>>>>..........<<<<<<<<<<<<<<<<<<<<....
Yerpes.BPG         CCCUGGUAGUCCACGCUGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUG
#=GR Yerpes.BPG SS .>>>>...>>>>>>>>..........<<<<<<<<<<<<<<<<<<<<....
#=GC SS_cons       .>>>>...>>>>>>>>..........<<<<<<<<<<<<<<<<<<<<....
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         AGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACG
#=GR Esccol.BPG SS .>>>>>>>>>>>>...<<....>>...>>>>>>>>>>>>>>>.<<<<..<
Vibcho.BPG         AGGCGUGGCUUUCGGAGCUAACGCGUUAAGUAGACCGCCUGGGGAGUACG
#=GR Vibcho.BPG SS .>>>>>>>>>>>>...<<....>>...>>>>>>>>>>>>>>>.<<<<..<
Haeinf.BPG         -ACUCUGGCACCCGUAGCUAACGUGAUAAAUCGACCGCCUGGGGAGUACG
#=GR Haeinf.BPG SS .>>>>>>>>>>>>...<<....>>...>>>>>>>>>>>>>>>.<<<<..<
Yerpes.BPG         AGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACG
#=GR Yerpes.BPG SS .>>>>>>>>>>>>...<<....>>...>>>>>>>>>>>>>>>.<<<<..<
#=GC SS_cons       .>>>>>>>>>>>>...<<....>>...>>>>>>>>>>>>>>>.<<<<..<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUG
#=GR Esccol.BPG SS <<<....>>>>...>>>>..>>>>..<<<<.<<<<<<<<.....<<<<<.
Vibcho.BPG         GUCGCAAGAUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUG
#=GR Vibcho.BPG SS <<<....>>>>...>>>>..>>>>..<<<<.<<<<<<<<.....<<<<<.
Haeinf.BPG         GCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCNGCACAAGCGGUG
#=GR Haeinf.BPG SS <<<....>>>>...>>>>..>>>>..<<<<.<<<<<<<<.....<<<<<.
Yerpes.BPG         GCCGCAAGGUUAAAACUCAAAUUAAUUGACGGGGGCCCGCACAAGCGGUG
#=GR Yerpes.BPG SS <<<....>>>>...>>>>........<<<<.<<<<<<<<.....<<<<<.
#=GC SS_cons       <<<....>>>>...>>>>..>>>>..<<<<.<<<<<<<<.....<<<<<.
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGA
#=GR Esccol.BPG SS .<<<<<<<<<<....<<<<........>>>>........<<<<<<<....
Vibcho.BPG         GAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGA
#=GR Vibcho.BPG SS .<<<<<<<<<<....<<<<........>>>>........<<<<<<<....
Haeinf.BPG         GAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGA
#=GR Haeinf.BPG SS .<<<<<<<<<<....<<<<........>>>>........<<<<<<<....
Yerpes.BPG         GAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUACUCUUGA
#=GR Yerpes.BPG SS .<<<<<<<<<<....<<<<........>>>>........<<<<<<<....
#=GC SS_cons       .<<<<<<<<<<....<<<<........>>>>........<<<<<<<....
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGA
#=GR Esccol.BPG SS ..<<<<<<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>
Vibcho.BPG         CAUCCAGAGAAUCUAGCGGAGACGCUGGAGUGCCUUCGGGAGCUCUGAGA
#=GR Vibcho.BPG SS ..<<<<<<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>
Haeinf.BPG         CAUCCUAAGAAGAGCUCAGAGAUGAGCUUGUGCCUUCGGGAACUUAGAGA
#=GR Haeinf.BPG SS ..<<<<<<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>
Yerpes.BPG         CAUCCACAGAAUUUGGCAGAGAUGCUAAAGUGCCUUCGGGAACUGUGAGA
#=GR Yerpes.BPG SS ..<<<<<<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>
#=GC SS_cons       ..<<<<<<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAG
#=GR Esccol.BPG SS .<<<.<<..<<<<<<<<<<<<<.<<<<<<<<<....>>>>><<<<.....
Vibcho.BPG         CAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAG
#=GR Vibcho.BPG SS .<<<.<<..<<<<<<<<<<<<<.<<<<<<<<<....>>>>><<<<.....
Haeinf.BPG         CAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAG
#=GR Haeinf.BPG SS .<<<.<<..<<<<<<<<<<<<<.<<<<<<<<<....>>>>><<<<.....
Yerpes.BPG         CAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAG
#=GR Yerpes.BPG SS .<<<.<<..<<<<<<<<<<<<<.<<<<<<<<<....>>>>><<<<.....
#=GC SS_cons       .<<<.<<..<<<<<<<<<<<<<.<<<<<<<<<....>>>>><<<<.....
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         UCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUC-CGGCCGG
#=GR Esccol.BPG SS .>>>>....>>>>.....<<<<<<<<<<<<<<.<<..<<<<....>>>>>
Vibcho.BPG         UCCCGCAACGAGCGCAACCCUUAUCCUUGUUUGCCAGCACGUAAUGGUGG
#=GR Vibcho.BPG SS .>>>>....>>>>.....<<<<<<<<<<<.<<.<<..<<<......>>>>
Haeinf.BPG         UCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGACU-UGGUCGG
#=GR Haeinf.BPG SS .>>>>....>>>>.....<<<<<<<<<<<<<<.<<..<<<<....>>>>>
Yerpes.BPG         UCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCACGUAAUGGUGG
#=GR Yerpes.BPG SS .>>>>....>>>>.....<<<<<<<<<<<<<<.<<..<<<......>>>>
#=GC SS_cons       .>>>>....>>>>.....<<<<<<<<<<<<<<.<<..<<<<....>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-xxxxxxx

Esccol.BPG         GAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACG
#=GR Esccol.BPG SS >>>..>>>>>>>..<<<<<<<<.....>>>>>>>>....>>>>>..>>>>
Vibcho.BPG         GAACUCCAGGGAGACUGCCGGUGAUAAACCGGAGGAAGGUGGGGACGACG
#=GR Vibcho.BPG SS >>>...>>>>>>..<<<<<<<<.....>>>>>>>>....>>>>>..>>>>
Haeinf.BPG         GAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUNGGGAUGACG
#=GR Haeinf.BPG SS >>>..>>>>>>>..<<<<<<<<.....>>>>>>>>....>>>>>..>>>>
Yerpes.BPG         GAACUCAAGGGAGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACG
#=GR Yerpes.BPG SS >>>..>>>>>>>..<<<<<<<<.....>>>>>>>>....>>>>>..>>>>
#=GC SS_cons       >>>..>>>>>>>..<<<<<<<<.....>>>>>>>>....>>>>>..>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         UCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGC
#=GR Esccol.BPG SS >>.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>...<<<<<
Vibcho.BPG         UCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGC
#=GR Vibcho.BPG SS >>.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>...<<<<<
Haeinf.BPG         UCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGC
#=GR Haeinf.BPG SS >>.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<
Yerpes.BPG         UCAAGUCAUCAUGGCCCUUACGAGUAGGGCUACACACGUGCUACAAUGGC
#=GR Yerpes.BPG SS >>.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>...<<<<<
#=GC SS_cons       >>.>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>>>>...<<<<<
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GCAUACAAAGAGAAGCGA-CCUCGCGA-GAGCAAGCGGACCUCAUAAAGU
#=GR Esccol.BPG SS <<<<.....<<<..<<....<<<.....>>>...>>....>>>.....>>
Vibcho.BPG         GUAUACAGAGGGCAGCGAAUACCGCGAAGGUGGAGCGAAUCUCACAAAGU
#=GR Vibcho.BPG SS <<<<.....<<<..<<....<<<.....>>>...>>....>>>.....>>
Haeinf.BPG         GUAUACAGAGGGAAGCGA-AGCUGCGA-GGUGGAGCGAAUCUCAUAAAGU
#=GR Haeinf.BPG SS <<<<.....<<<..<<....<<<.....>>>...>>....>>>.....>>
Yerpes.BPG         AGAUACAAAGUGAAGCGA-ACUCGCGA-GAGCCAGCGGACCACAUAAAGU
#=GR Yerpes.BPG SS <<<<.....<<<..<<....<<<.....>>>...>>....>>>.....>>
#=GC SS_cons       <<<<.....<<<..<<....<<<.....>>>...>>....>>>.....>>
#=GC RF            xxxxxxxxxxxxxxxxxx-xxxxxxxx-xxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAU
#=GR Esccol.BPG SS >>>>>>>.........<<<<<<<........>>>>>>>..........>>
Vibcho.BPG         ACGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAU
#=GR Vibcho.BPG SS >>>>>>>.........<<<<<<<........>>>>>>>..........>>
Haeinf.BPG         ACGUCUAAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAU
#=GR Haeinf.BPG SS >>>>>...........<<<<<<<........>>>>>>>..........>>
Yerpes.BPG         CUGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAU
#=GR Yerpes.BPG SS >>>>>>>.........<<<<<<<........>>>>>>>..........>>
#=GC SS_cons       >>>>>>>.........<<<<<<<........>>>>>>>..........>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         CGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUU
#=GR Esccol.BPG SS >>>.....<<<<<<<.........>>>>>>>...........>>>>>>>>
Vibcho.BPG         CGCUAGUAAUCGCAAAUCAGAAUGUUGCGGUGAAUACGUUCCCGGGCCUU
#=GR Vibcho.BPG SS >>>.....<<<<<<<.........>>>>>>>...........>>>>>>>>
Haeinf.BPG         CGCUAGUAAUCGCGAAUCAGAAUGUCGCGGUGAAUACGUUCCCGGGCNUU
#=GR Haeinf.BPG SS >>>.....<<<<<<<.........>>>>>>>...........>>>>>>>>
Yerpes.BPG         CGCUAGUAAUCGUAGAUCAGAAUGCUACGGUGAAUACGUUCCCGGGCCUU
#=GR Yerpes.BPG SS >>>.....<<<<<<<.........>>>>>>>...........>>>>>>>>
#=GC SS_cons       >>>.....<<<<<<<.........>>>>>>>...........>>>>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUA
#=GR Esccol.BPG SS >>.>>............<<<<<<<<..<<<<<<<<<<<<....<<<<<<.
Vibcho.BPG         GUACACACCGCCCGUCACACCAUGGGAGUGGGCUGCAAAAGAAGCAGGUA
#=GR Vibcho.BPG SS >>.>>............<<<<<<<<..<<<<<<<<<<<<....<<<<<<.
Haeinf.BPG         GUACACACCGCCCGUCACACCAUGGGAGUGGGUUGUACCAGAAGUAGAUA
#=GR Haeinf.BPG SS >>.>>............<<<<<<<<..<<<<<<<<<<<<....<<<<<<.
Yerpes.BPG         GUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUA
#=GR Yerpes.BPG SS >>.>>............<<<<<<<<..<<<<<<<<<<<<....<<<<<<.
#=GC SS_cons       >>.>>............<<<<<<<<..<<<<<<<<<<<<....<<<<<<.
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GCUUAACCUUCGGGAGGGCGCUUACC-ACUUUGUGAUUCAUGACUGGGGU
#=GR Esccol.BPG SS .<<<..<<....>>.>>>.>>>>>>....>>>>>>>>>>>>..>>>>>>>
Vibcho.BPG         GUUUAACCUUCGGGAGGACGCUUGC-CACUUUGUGGUUCAUGACUGGGGU
#=GR Vibcho.BPG SS .<<<..<<....>>.>>>.>>>>>>....>>>>>>>>>>>>..>>>>>>>
Haeinf.BPG         GCUUAACCUUUUGGAGGGCGUUUACC-ACGGUAUGAUUCAUGACUGGGGN
#=GR Haeinf.BPG SS .<<<..<<....>>.>>>.>>>>>>....>>>>>>>>>>>>..>>>>>>>
Yerpes.BPG         GCUUAACCUUCGGGAGGGCGCUUACC-ACUUUGUGAUUCAUGACUGNNNN
#=GR Yerpes.BPG SS .<<<..<<....>>.>>>.>>>>>>....>>>>>>>>>>>>..>>>>>>>
#=GC SS_cons       .<<<..<<....>>.>>>.>>>>>>....>>>>>>>>>>>>..>>>>>>>
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxx-xxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         GAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU
#=GR Esccol.BPG SS >..............<<<<<<<<<<....>>>>>>>>>>...........
Vibcho.BPG         GAAGUCGUAACAAGGUAGCGCUAGGGGAACCUGGCGCUGGAUCACCUCCU
#=GR Vibcho.BPG SS >..............<<<<<<<<<<....>>>>>>>>>>...........
Haeinf.BPG         NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
#=GR Haeinf.BPG SS >..............<<<<<<<<<<....>>>>>>>>>>...........
Yerpes.BPG         NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
#=GR Yerpes.BPG SS >..............<<<<<<<<<<....>>>>>>>>>>...........
#=GC SS_cons       >..............<<<<<<<<<<....>>>>>>>>>>...........
#=GC RF            xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

Esccol.BPG         UA--
#=GR Esccol.BPG SS ....
Vibcho.BPG         UU--
#=GR Vibcho.BPG SS ....
Haeinf.BPG         NNNN
#=GR Haeinf.BPG SS ....
Yerpes.BPG         NN--
#=GR Yerpes.BPG SS ....
#=GC SS_cons       ....
#=GC RF            xx--
//
