# STOCKHOLM 1.0

#=GF AC   RF01096
#=GF ID   PK-HAV
#=GF DE   3'-terminal pseudoknot of HepA virus
#=GF AU   Wilkinson A
#=GF SE   Pseudobase
#=GF SS   Pseudobase
#=GF GA   20.00
#=GF TC   28.21
#=GF NC   undefined
#=GF TP   Cis-reg;
#=GF BM   cmbuild  -F CM SEED; cmcalibrate -s 1 CM
#=GF BM   cmsearch  -Z 169604 -E 1000  --toponly  CM SEQDB
#=GF DR   PKBASE; PKB00265
#=GF DR   SO:0005836 SO:regulatory_region
#=GF RN   [1]
#=GF RM   15218192
#=GF RT   Analysis of the RNA of Potato yellow vein virus: evidence for a
#=GF RT   tripartite genome and conserved 3'-terminal structures among members
#=GF RT   of the genus Crinivirus.
#=GF RA   Livieratos IC, Eliasco E, Muller G, Olsthoorn RC, Salazar LF, Pleij
#=GF RA   CW, Coutts RH;
#=GF RL   J Gen Virol. 2004;85:2065-2075.
#=GF WK   http://en.wikipedia.org/wiki/3'_end_pseudoknot_of_HepA_virus
#=GF SQ   2

AB020564.1/7423-7477             UUAAACAAAUUUUCUUAAAAUUUCUGAGGUUUGUUUAUUUCUUUUAU.CA
X15462.1/90-145                  UUAAACAAACCUUCUUAAAAUUUCUGAGAUUUGUUUAUUUUGCAUAUUCA
#=GC SS_cons                     .<<<<<<<<<<.........AAAAAAA>>>>>>>>>>.........a.aa
#=GC RF                          UuaaaCaaauuUUCUUAAAAUUUCUGAgguuuGuuuaUUUCUUUUAU.CA

AB020564.1/7423-7477             GUAAAU
X15462.1/90-145                  GUAAAU
#=GC SS_cons                     a.aaa.
#=GC RF                          GUAAAU
//
