LICENSE
MANIFEST.in
README
VERSION
build_it
clean
setup.py
HTSeq/StepVector.py
HTSeq/_HTSeq_internal.py
HTSeq/__init__.py
HTSeq/_version.py
HTSeq.egg-info/PKG-INFO
HTSeq.egg-info/SOURCES.txt
HTSeq.egg-info/dependency_links.txt
HTSeq.egg-info/top_level.txt
HTSeq/scripts/__init__.py
HTSeq/scripts/count.py
HTSeq/scripts/qa.py
doc/Makefile
doc/add_counter.py
doc/alignments.rst
doc/conf.py
doc/contrib.rst
doc/count.rst
doc/count_modes.odg
doc/count_modes.png
doc/features.rst
doc/genomic.rst
doc/history.rst
doc/index.rst
doc/install.rst
doc/make_it
doc/misc.rst
doc/overview.rst
doc/qa.rst
doc/qa_example.png
doc/qualplot.png
doc/sequences.rst
doc/tour.rst
doc/tss.rst
doc/tss1.py
doc/tss2.py
doc/tss3.py
doc/tss_fig1.png
doc/tss_fig2.png
doc/tss_fig3.png
doc/tss_fig4.png
scripts/htseq-count
scripts/htseq-qa
src/AutoPyObjPtr.i
src/Makefile
src/StepVector.i
src/StepVector_wrap.cxx
src/_HTSeq.c
src/step_vector.h
src/HTSeq/_HTSeq.pxd
src/HTSeq/_HTSeq.pyx
src/HTSeq/__init__.py