Hints for mothur on cluster machines:
-------------------------------------

If you would like to build a mpi-enabled version of mothur, you will
want to change the no to yes below. If you are running mothur on a
single machine and not a cluster, the mpi-enabled version is slower than
using the non-mpi enabled version.

USEMPI ?= no

ifeq  ($(strip $(USEMPI)),yes)
    CXX = mpic++
    CXXFLAGS += -DUSE_MPI
endif

(see http://www.mothur.org/wiki/Makefile_options#MPI_Version)


 -- Andreas Tille <tille@debian.org>  Sun, 30 Jan 2011 00:21:42 +0100
