/****
DIAMOND protein aligner
Copyright (C) 2024 Vincent Spath

Code developed by Vincent Spath <vincent.spath@tuebingen.mpg.de>

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
****/

#include "seed_set_dna.h"


namespace Dna {

std::vector<SeedMatch>
merge_and_extend_seeds(std::vector<SeedMatch> &seed_hits, const Sequence &query, const Search::Config &cfg);


}
