/****
DIAMOND protein sequence aligner
Copyright (C) 2012-2026 Benjamin J. Buchfink

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
****/
// SPDX-License-Identifier: GPL-3.0-or-later

#include <vector>
#include <thread>
#include <atomic>
#include <iostream>
#include <limits>
#include <stdexcept>
#include "basic/config.h"
#include "search/hit_buffer.h"
#include "basic/config.h"
#include "util/parallel/simple_thread_pool.h"

static uint64_t hit_fp(uint32_t query, uint64_t subject, uint32_t seed_offset, uint16_t score)
{
	return (uint64_t)query       * 2654435769ULL
		 + (uint64_t)subject     * 2246822519ULL
		 + (uint64_t)seed_offset * 3266489917ULL
		 + (uint64_t)score       *  668265261ULL;
}

struct HitBufferTestResult {
	bool   passed;
	size_t expected_hits;
	size_t actual_hits;
	uint64_t expected_checksum;
	uint64_t actual_checksum;
};

static HitBufferTestResult run_single_mode(bool membuf_mode)
{
	static constexpr int      BIN_COUNT       = 32;
	static constexpr int      QUERIES_PER_BIN = 1000;
	static constexpr int      QUERY_COUNT     = BIN_COUNT * QUERIES_PER_BIN;
	static constexpr int      HITS_PER_QUERY  = 11;
	static constexpr uint64_t TARGET_LEN      = 50000; // subject locs drawn from [1, TARGET_LEN]
	static constexpr int      THREAD_COUNT    = BIN_COUNT; // one writer thread per bin
	static constexpr int      QUERY_CONTEXTS  = 1;

	const uint32_t max_query  = (uint32_t)QUERY_COUNT;
	const uint64_t max_target = TARGET_LEN + 1;
	const bool saved_membuf = config.trace_pt_membuf;
	const bool saved_swipe  = config.swipe_all;
	config.trace_pt_membuf  = membuf_mode;
	config.swipe_all        = false;
	std::vector<uint32_t> key_partition;
	for (int i = 1; i <= BIN_COUNT; ++i)
		key_partition.push_back(uint32_t(i * QUERIES_PER_BIN));

	SimpleThreadPool search_pool;
	Search::HitBuffer buf(
		key_partition, ".", false,
		QUERY_CONTEXTS, THREAD_COUNT,
		max_query, max_target, search_pool);

	std::atomic<uint64_t> expected_cs{ 0 };
	{
		std::vector<std::thread> writers;
		writers.reserve(THREAD_COUNT);
		for (int t = 0; t < THREAD_COUNT; ++t) {
			writers.emplace_back([&, t]() {
				Search::HitBuffer::Writer w(buf, (size_t)t);
				uint64_t local_cs = 0;
				const int q_begin = t * QUERIES_PER_BIN;
				const int q_end   = q_begin + QUERIES_PER_BIN;
				for (int q = q_begin; q < q_end; ++q) {
					const Loc      seed_off = (Loc)(q % 64);
					const uint32_t query    = (uint32_t)q;
					w.new_query(query, seed_off);
					for (int j = 0; j < HITS_PER_QUERY; ++j) {
						const uint32_t subj  = uint32_t((q * HITS_PER_QUERY + j) % TARGET_LEN + 1);
						const uint16_t score = uint16_t((q * 7 + j * 13) % 65534 + 1);
						w.write(query, PackedLoc(subj), score);
						local_cs += hit_fp(query, subj, (uint32_t)seed_off, score);
					}
				}
				expected_cs.fetch_add(local_cs, std::memory_order_relaxed);
			});
		}
		for (auto& t : writers)
			t.join();
	}

	buf.finish_writing();
	buf.alloc_buffer();

	size_t   actual_total = 0;
	uint64_t actual_cs    = 0;

	while (buf.load(std::numeric_limits<size_t>::max())) {
		Search::Hit* hits;
		size_t count;
		std::tie(hits, count, std::ignore, std::ignore) = buf.retrieve();
		if (hits) {
			for (size_t i = 0; i < count; ++i) {
				const Search::Hit& h = hits[i];
				actual_cs += hit_fp(
					h.query_,
					(uint64_t)h.subject_,
					(uint32_t)h.seed_offset_,
					h.score_);
			}
			actual_total += count;
		}
	}

	buf.free_buffer();

	config.trace_pt_membuf = saved_membuf;
	config.swipe_all       = saved_swipe;

	const size_t   expected_total = (size_t)QUERY_COUNT * HITS_PER_QUERY;
	const uint64_t expected_sum   = expected_cs.load();
	const bool passed = (actual_total == expected_total) && (actual_cs == expected_sum);
	return { passed, expected_total, actual_total, expected_sum, actual_cs };
}

int run_hit_buffer_stress_test()
{
	std::cout << "\nHitBuffer stress test" << std::endl;
	std::cout << "=====================" << std::endl;
	std::cout << "Threads = " << config.threads_ << std::endl;

	int failures = 0;
	for (bool membuf : { true, false }) {
		const char* mode = membuf ? "in-memory (membuf)" : "disk";
		std::cout << "  Mode: " << mode << " ... " << std::flush;
		HitBufferTestResult r;
		try {
			r = run_single_mode(membuf);
		}
		catch (const std::exception& e) {
			std::cout << "EXCEPTION: " << e.what() << std::endl;
			++failures;
			continue;
		}
		if (r.passed) {
			std::cout << "PASSED"
				<< " (" << r.actual_hits << " hits, checksum ok)" << std::endl;
		}
		else {
			std::cout << "FAILED"
				<< "\n    expected hits=" << r.expected_hits
				<< " actual=" << r.actual_hits
				<< "\n    expected checksum=" << r.expected_checksum
				<< " actual=" << r.actual_checksum << std::endl;
			++failures;
		}
	}

	std::cout << "  Result: "
		<< (2 - failures) << "/2 passed" << std::endl;
	std::cout << "=====================" << std::endl;
	return failures;
}