Build.PL
Changes
LICENSE
META.json
README.md
cpanfile
doc/bacteria_2_3.md
doc/dazzler.md
doc/e_coli.md
doc/formats.md
doc/gage_b.md
doc/masurca.md
doc/model_organisms.md
doc/pacbio_consensus.md
doc/paralogs.md
lib/App/Anchr.pm
lib/App/Anchr/Command/anchors.pm
lib/App/Anchr/Command/break.pm
lib/App/Anchr/Command/contained.pm
lib/App/Anchr/Command/cover.pm
lib/App/Anchr/Command/dazzname.pm
lib/App/Anchr/Command/dep.pm
lib/App/Anchr/Command/group.pm
lib/App/Anchr/Command/kunitigs.pm
lib/App/Anchr/Command/layout.pm
lib/App/Anchr/Command/localcor.pm
lib/App/Anchr/Command/merge.pm
lib/App/Anchr/Command/orient.pm
lib/App/Anchr/Command/overlap.pm
lib/App/Anchr/Command/overlap2.pm
lib/App/Anchr/Command/paf2ovlp.pm
lib/App/Anchr/Command/quorum.pm
lib/App/Anchr/Command/replace.pm
lib/App/Anchr/Command/restrict.pm
lib/App/Anchr/Command/scaffold.pm
lib/App/Anchr/Command/show2ovlp.pm
lib/App/Anchr/Command/trim.pm
lib/App/Anchr/Command/trimlong.pm
lib/App/Anchr/Common.pm
minil.toml
script/anchr
share/adapter.jf
share/check_dep.sh
share/createSuperReadsForDirectory.perl
share/illumina_adapters.fa
share/install_dep.sh
share/poa-blosum80.mat
share/sort_on_ref.sh
share/sr_stat.sh
t/00-load.t
t/01-commands.t
t/02-dep-failed.t
t/02-dep.t
t/03-dazzname.t
t/04-show2ovlp.t
t/05-trim.t
t/07-overlap.t
t/08-overlap2.t
t/09-orient.t
t/10-cover.t
t/11-group.t
t/12-replace.t
t/13-restrict.t
t/14-contained.t
t/15-merge.t
t/16-layout.t
t/17-break.t
t/18-quorum.t
t/19-kunitigs.t
t/1_4.2.restrict.tsv
t/1_4.anchor.fasta
t/1_4.ovlp.tsv
t/1_4.pac.fasta
t/1_4.pac.ovlp.tsv
t/1_4.pac.paf
t/1_4.pac.paf.ovlp.tsv
t/1_4.renamed.fasta
t/1_4.replace.tsv
t/1_4.restrict.tsv
t/1_4.show.txt
t/20-anchors.t
t/21-scaffold.t
t/22-paf2ovlp.t
t/23-trimlong.t
t/24_4.anchor.ovlp.tsv
t/24_4.ovlp.tsv
t/24_4.relation.tsv
t/24_4.strand.fasta
t/90-common.t
t/R1.fq.gz
t/R2.fq.gz
t/contained.fasta
t/environment.json
t/merge.fasta
META.yml
MANIFEST