bin/clarid-tools
cpanfile
docker/Dockerfile
docker/README.md
docs/about/about.md
docs/about/citation.md
docs/css/theme_overrides.css
docs/download-and-installation/docker-based.md
docs/download-and-installation/non-containerized.md
docs/help/faq.md
docs/img/3tr-funding.png
docs/img/biosample-qrcode.png
docs/img/clarid-logo-1.png
docs/img/clarid-logo-2.png
docs/img/clarid-logo.png
docs/img/cnag-logo-white.png
docs/img/subject-qrcode.png
docs/index.md
docs/js/datatables-init.js
docs/js/theme_overrides.js
docs/js/vendor/katex.js
docs/technical-details/codebook-and-schema.md
docs/technical-details/implementation.md
docs/technical-details/pre-processing-script.md
docs/technical-details/specification.md
docs/usage/cli-reference.md
docs/usage/quickstart.md
docs/use-cases/biosample.md
docs/use-cases/subject.md
ex/biosample.csv
ex/biosample_to_decode.csv
ex/subject.csv
ex/subject_to_decode.csv
lib/ClarID/Tools.pm
lib/ClarID/Tools/Command/code.pm
lib/ClarID/Tools/Command/qrcode.pm
lib/ClarID/Tools/Command/validate.pm
lib/ClarID/Tools/Util.pm
lib/ClarID/Tools/Validator.pm
makefile.install
Makefile.PL
MANIFEST			This list of files
mkdocs.yml
nb/data/biosample/biospecimen.project-target-aml.2025-06-29.tar.gz
nb/data/biosample/clarid_human.csv.gz
nb/data/biosample/clarid_stub.csv.gz
nb/data/biosample/mapping_biosample.yaml
nb/data/biosample/sample.tsv.gz
nb/data/scripts/csv2_clarid_in.py
nb/data/scripts/README.md
nb/data/scripts/test_parse_data_unittest.py
nb/data/subject/clarid_human.csv.gz
nb/data/subject/clarid_stub.csv.gz
nb/data/subject/clinical.cohort.2025-06-02.tar.gz
nb/data/subject/clinical.tsv.gz
nb/data/subject/mapping_subject.yaml
non-containerized/README.md
README.md
share/clarid-codebook-schema.json
share/clarid-codebook.yaml
share/icd10.json
share/icd10_order.json
t/bulk.t
t/code.t
t/data/bad_codebook.yaml
t/data/biosample_conds.csv
t/data/biosample_conds_to_decode.csv
t/data/duplicate_codebook.yaml
t/qrcode.t
t/validate.t
VERSION
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
