<?xml version="1.0" encoding="utf-8"?>
<topologyfile xmlns:fo="http://www.w3.org/1999/XSL/Format">
  <head>
    <forcefield>Charmm</forcefield>
  </head>
  <body>
    <moleculeclass name="Biomolecules" type="mixed">
      <molecule name="ALA">
        <atomlist numberofatoms="10">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT3" partialcharge="-0.270000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB1</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="8" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="9" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="10" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="9">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="9"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="9" atomtwoindex="10"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="9"/>
      </molecule>
      <molecule name="ARG">
        <atomlist numberofatoms="24">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG2</externalname>
          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG3</externalname>
          </atom>
          <atom index="11" name="CT2" partialcharge="0.200000">
            <externalname source="IUPAC">CD</externalname>
          </atom>
          <atom index="12" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HD2</externalname>
          </atom>
          <atom index="13" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HD3</externalname>
          </atom>
          <atom index="14" name="NC2" partialcharge="-0.700000">
            <externalname source="IUPAC">NE</externalname>
          </atom>
          <atom index="15" name="HC" partialcharge="0.440000">
            <externalname source="IUPAC">HE</externalname>
          </atom>
          <atom index="16" name="C" partialcharge="0.640000">
            <externalname source="IUPAC">CZ</externalname>
          </atom>
          <atom index="17" name="NC2" partialcharge="-0.800000">
            <externalname source="IUPAC">NH1</externalname>
          </atom>
          <atom index="18" name="HC" partialcharge="0.460000">
            <externalname source="IUPAC">HH11</externalname>
          </atom>
          <atom index="19" name="HC" partialcharge="0.460000">
            <externalname source="IUPAC">HH12</externalname>
          </atom>
          <atom index="20" name="NC2" partialcharge="-0.800000">
            <externalname source="IUPAC">NH2</externalname>
          </atom>
          <atom index="21" name="HC" partialcharge="0.460000">
            <externalname source="IUPAC">HH21</externalname>
          </atom>
          <atom index="22" name="HC" partialcharge="0.460000">
            <externalname source="IUPAC">HH22</externalname>
          </atom>
          <atom index="23" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="24" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="23">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="11"/>
          <connection atomoneindex="11" atomtwoindex="14"/>
          <connection atomoneindex="14" atomtwoindex="16"/>
          <connection atomoneindex="16" atomtwoindex="20"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="23"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="11" atomtwoindex="12"/>
          <connection atomoneindex="11" atomtwoindex="13"/>
          <connection atomoneindex="14" atomtwoindex="15"/>
          <connection atomoneindex="17" atomtwoindex="18"/>
          <connection atomoneindex="17" atomtwoindex="19"/>
          <connection atomoneindex="20" atomtwoindex="21"/>
          <connection atomoneindex="20" atomtwoindex="22"/>
          <connection atomoneindex="23" atomtwoindex="24"/>
          <connection atomoneindex="16" atomtwoindex="17"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="23"/>
      </molecule>
      <molecule name="ASN">
        <atomlist numberofatoms="14">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CC" partialcharge="0.550000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="O" partialcharge="-0.550000">
            <externalname source="IUPAC">OD1</externalname>
          </atom>
          <atom index="10" name="NH2" partialcharge="-0.620000">
            <externalname source="IUPAC">ND2</externalname>
          </atom>
          <atom index="11" name="H" partialcharge="0.320000">
            <externalname source="IUPAC">HD21</externalname>
          </atom>
          <atom index="12" name="H" partialcharge="0.300000">
            <externalname source="IUPAC">HD22</externalname>
          </atom>
          <atom index="13" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="14" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="13">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="13"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="10" atomtwoindex="11"/>
          <connection atomoneindex="10" atomtwoindex="12"/>
          <connection atomoneindex="13" atomtwoindex="14"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="13"/>
      </molecule>
      <molecule name="ASP">
        <atomlist numberofatoms="12">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.280000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CC" partialcharge="0.620000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OD1</externalname>
          </atom>
          <atom index="10" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OD2</externalname>
          </atom>
          <atom index="11" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="12" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="11">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="11"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="11" atomtwoindex="12"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="11"/>
      </molecule>
      <molecule name="CYS">
        <atomlist numberofatoms="11">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.110000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="S" partialcharge="-0.230000">
            <externalname source="IUPAC">SG</externalname>
          </atom>
          <atom index="9" name="HS" partialcharge="0.160000">
            <externalname source="IUPAC">HG</externalname>
          </atom>
          <atom index="10" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="11" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="10">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="10"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="10" atomtwoindex="11"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="10"/>
      </molecule>
      <molecule name="GLN">
        <atomlist numberofatoms="17">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG2</externalname>
          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG3</externalname>
          </atom>
          <atom index="11" name="CC" partialcharge="0.550000">
            <externalname source="IUPAC">CD</externalname>
          </atom>
          <atom index="12" name="O" partialcharge="-0.550000">
            <externalname source="IUPAC">OE1</externalname>
          </atom>
          <atom index="13" name="NH2" partialcharge="-0.620000">
            <externalname source="IUPAC">NE2</externalname>
          </atom>
          <atom index="14" name="H" partialcharge="0.320000">
            <externalname source="IUPAC">HE21</externalname>
          </atom>
          <atom index="15" name="H" partialcharge="0.300000">
            <externalname source="IUPAC">HE22</externalname>
          </atom>
          <atom index="16" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="17" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="16">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="11"/>
          <connection atomoneindex="11" atomtwoindex="13"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="16"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="13" atomtwoindex="14"/>
          <connection atomoneindex="13" atomtwoindex="15"/>
          <connection atomoneindex="16" atomtwoindex="17"/>
          <connection atomoneindex="11" atomtwoindex="12"/>
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        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="16"/>
      </molecule>
      <molecule name="GLU">
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          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CT2" partialcharge="-0.280000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG2</externalname>
          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG3</externalname>
          </atom>
          <atom index="11" name="CC" partialcharge="0.620000">
            <externalname source="IUPAC">CD</externalname>
          </atom>
          <atom index="12" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OE1</externalname>
          </atom>
          <atom index="13" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OE2</externalname>
          </atom>
          <atom index="14" name="C" partialcharge="0.510000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="15" name="O" partialcharge="-0.510000">
            <externalname source="IUPAC">O</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="14">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="11"/>
          <connection atomoneindex="11" atomtwoindex="13"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="14"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="14" atomtwoindex="15"/>
          <connection atomoneindex="11" atomtwoindex="12"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="14"/>
      </molecule>
      <molecule name="GLT">
        <atomlist numberofatoms="18">
          <atom index="1" name="NH1" partialcharge="-0.470000">
            <externalname source="IUPAC">N</externalname>
          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CT2" partialcharge="-0.280000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG2</externalname>
          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG3</externalname>
          </atom>
          <atom index="11" name="CC" partialcharge="0.620000">
            <externalname source="IUPAC">CD</externalname>
          </atom>
          <atom index="12" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OE1</externalname>
          </atom>
          <atom index="13" name="OC" partialcharge="-0.760000">
            <externalname source="IUPAC">OE2</externalname>
          </atom>
          <atom index="14" name="CC" partialcharge="0.550000">
            <externalname source="IUPAC">C</externalname>
          </atom>
          <atom index="15" name="O" partialcharge="-0.550000">
            <externalname source="IUPAC">O</externalname>
          </atom>
          <atom index="16" name="NH2" partialcharge="-0.620000">
            <externalname source="IUPAC">NT</externalname>
          </atom>
          <atom index="17" name="H" partialcharge="0.320000">
            <externalname source="IUPAC">2H</externalname>
          </atom>
          <atom index="18" name="H" partialcharge="0.300000">
            <externalname source="IUPAC">1H</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="17">
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="5" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="11"/>
          <connection atomoneindex="11" atomtwoindex="13"/>
          <connection atomoneindex="1" atomtwoindex="2"/>
          <connection atomoneindex="1" atomtwoindex="3"/>
          <connection atomoneindex="3" atomtwoindex="14"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="5" atomtwoindex="6"/>
          <connection atomoneindex="5" atomtwoindex="7"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="14" atomtwoindex="15"/>
          <connection atomoneindex="11" atomtwoindex="12"/>
          <connection atomoneindex="14" atomtwoindex="16"/>
          <connection atomoneindex="16" atomtwoindex="17"/>
          <connection atomoneindex="16" atomtwoindex="18"/>
        </connectivitymatrix>
        <externalconnection direction="In" atomindex="1"/>
        <externalconnection direction="Out" atomindex="0"/>
      </molecule>
      <molecule name="GLY">
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            <externalname source="IUPAC">HA</externalname>
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            <externalname source="IUPAC">HN</externalname>
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            <externalname source="IUPAC">SD</externalname>
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            <externalname source="IUPAC">C</externalname>
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      <molecule name="MTT">
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          </atom>
          <atom index="2" name="H" partialcharge="0.310000">
            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
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            <externalname source="IUPAC">HA</externalname>
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            <externalname source="IUPAC">CB</externalname>
          </atom>
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            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
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            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG2</externalname>
          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
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          <atom index="11" name="S" partialcharge="-0.090000">
            <externalname source="IUPAC">SD</externalname>
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            <externalname source="IUPAC">CE</externalname>
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            <externalname source="IUPAC">C</externalname>
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          </atom>
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            <externalname source="IUPAC">HT</externalname>
          </atom>
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          <connection atomoneindex="18" atomtwoindex="17"/>
          <connection atomoneindex="19" atomtwoindex="16"/>
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      <molecule name="PHE">
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            <externalname source="IUPAC">N</externalname>
          </atom>
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            <externalname source="IUPAC">H</externalname>
          </atom>
          <atom index="3" name="CT1" partialcharge="0.070000">
            <externalname source="IUPAC">CA</externalname>
          </atom>
          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
          </atom>
          <atom index="5" name="CT2" partialcharge="-0.180000">
            <externalname source="IUPAC">CB</externalname>
          </atom>
          <atom index="6" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB2</externalname>
          </atom>
          <atom index="7" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HB3</externalname>
          </atom>
          <atom index="8" name="CA" partialcharge="0.000000">
            <externalname source="IUPAC">CG</externalname>
          </atom>
          <atom index="9" name="CA" partialcharge="-0.115000">
            <externalname source="IUPAC">CD1</externalname>
          </atom>
          <atom index="10" name="HP" partialcharge="0.115000">
            <externalname source="IUPAC">HD1</externalname>
          </atom>
          <atom index="11" name="CA" partialcharge="-0.115000">
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          </atom>
          <atom index="12" name="HP" partialcharge="0.115000">
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          </atom>
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            <externalname source="IUPAC">CZ</externalname>
          </atom>
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            <externalname source="IUPAC">HZ</externalname>
          </atom>
          <atom index="15" name="CA" partialcharge="-0.115000">
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          </atom>
          <atom index="16" name="HP" partialcharge="0.115000">
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          </atom>
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          </atom>
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          </atom>
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          </atom>
          <atom index="12" name="HA" partialcharge="0.090000">
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          </atom>
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            <externalname source="IUPAC">C</externalname>
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            <externalname source="IUPAC">H</externalname>
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          <atom index="4" name="HB" partialcharge="0.090000">
            <externalname source="IUPAC">HA</externalname>
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          </atom>
          <atom index="7" name="OH1" partialcharge="-0.660000">
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          </atom>
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          <atom index="9" name="CT3" partialcharge="-0.270000">
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          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
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          </atom>
          <atom index="11" name="HA" partialcharge="0.090000">
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          </atom>
          <atom index="12" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG23</externalname>
          </atom>
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            <externalname source="IUPAC">C</externalname>
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          <atom index="7" name="HA" partialcharge="0.090000">
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          </atom>
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            <externalname source="IUPAC">CB</externalname>
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          </atom>
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          </atom>
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          </atom>
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          </atom>
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            <externalname source="IUPAC">1H</externalname>
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            <externalname source="IUPAC">HA</externalname>
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            <externalname source="IUPAC">CB</externalname>
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            <externalname source="IUPAC">HB2</externalname>
          </atom>
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            <externalname source="IUPAC">HB3</externalname>
          </atom>
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            <externalname source="IUPAC">OH</externalname>
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            <externalname source="IUPAC">H</externalname>
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            <externalname source="IUPAC">HA</externalname>
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            <externalname source="IUPAC">CB</externalname>
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            <externalname source="IUPAC">HB</externalname>
          </atom>
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            <externalname source="IUPAC">HG11</externalname>
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          <atom index="9" name="HA" partialcharge="0.090000">
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          </atom>
          <atom index="10" name="HA" partialcharge="0.090000">
            <externalname source="IUPAC">HG13</externalname>
          </atom>
          <atom index="11" name="CT3" partialcharge="-0.270000">
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          </atom>
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            <externalname source="IUPAC">HG23</externalname>
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          <atom index="6" name="ON3" partialcharge="-0.820000">
            <externalname source="IUPAC">O2P</externalname>
          </atom>
          <atom index="7" name="ON2" partialcharge="-0.620000">
            <externalname source="IUPAC">O5'</externalname>
          </atom>
          <atom index="8" name="ON4" partialcharge="-0.680000">
            <externalname source="IUPAC">O5T</externalname>
          </atom>
          <atom index="9" name="HN4" partialcharge="0.340000">
            <externalname source="IUPAC">H5T</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="2">
          <connection atomoneindex="4" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
        </connectivitymatrix>
      </molecule>
      <molecule name="5POM">
        <atomlist numberofatoms="12">
          <atom index="1" name="CN8B" partialcharge="-0.080000">
            <externalname source="IUPAC">C5'</externalname>
          </atom>
          <atom index="2" name="HN8" partialcharge="0.090000">
            <externalname source="IUPAC">H5'</externalname>
          </atom>
          <atom index="3" name="HN8" partialcharge="0.090000">
            <externalname source="IUPAC">H5''</externalname>
          </atom>
          <atom index="4" name="P" partialcharge="1.500000">
            <externalname source="IUPAC">P</externalname>
          </atom>
          <atom index="5" name="ON3" partialcharge="-0.780000">
            <externalname source="IUPAC">O1P</externalname>
          </atom>
          <atom index="6" name="ON3" partialcharge="-0.780000">
            <externalname source="IUPAC">O2P</externalname>
          </atom>
          <atom index="7" name="ON2" partialcharge="-0.570000">
            <externalname source="IUPAC">O5'</externalname>
          </atom>
          <atom index="8" name="ON2" partialcharge="-0.570000">
            <externalname source="IUPAC">O5T</externalname>
          </atom>
          <atom index="9" name="CN9" partialcharge="-0.170000">
            <externalname source="IUPAC">C5T</externalname>
          </atom>
          <atom index="10" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H5T1</externalname>
          </atom>
          <atom index="11" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H5T2</externalname>
          </atom>
          <atom index="12" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H5T3</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="5">
          <connection atomoneindex="4" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="9" atomtwoindex="10"/>
          <connection atomoneindex="9" atomtwoindex="11"/>
          <connection atomoneindex="9" atomtwoindex="12"/>
        </connectivitymatrix>
      </molecule>
      <molecule name="3TER">
        <atomlist numberofatoms="4">
          <atom index="1" name="CN7" partialcharge="0.140000">
            <externalname source="IUPAC">C3'</externalname>
          </atom>
          <atom index="2" name="HN7" partialcharge="0.090000">
            <externalname source="IUPAC">H3'</externalname>
          </atom>
          <atom index="3" name="ON5" partialcharge="-0.660000">
            <externalname source="IUPAC">O3'</externalname>
          </atom>
          <atom index="4" name="HN5" partialcharge="0.430000">
            <externalname source="IUPAC">H3T</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="1">
          <connection atomoneindex="3" atomtwoindex="4"/>
        </connectivitymatrix>
      </molecule>
      <molecule name="3PHO">
        <atomlist numberofatoms="8">
          <atom index="1" name="CN7" partialcharge="0.010000">
            <externalname source="IUPAC">C3'</externalname>
          </atom>
          <atom index="2" name="HN7" partialcharge="0.090000">
            <externalname source="IUPAC">H3'</externalname>
          </atom>
          <atom index="3" name="P" partialcharge="1.500000">
            <externalname source="IUPAC">P3</externalname>
          </atom>
          <atom index="4" name="ON3" partialcharge="-0.820000">
            <externalname source="IUPAC">O1P3</externalname>
          </atom>
          <atom index="5" name="ON3" partialcharge="-0.820000">
            <externalname source="IUPAC">O2P3</externalname>
          </atom>
          <atom index="6" name="ON2" partialcharge="-0.620000">
            <externalname source="IUPAC">O3'</externalname>
          </atom>
          <atom index="7" name="ON4" partialcharge="-0.680000">
            <externalname source="IUPAC">O3T</externalname>
          </atom>
          <atom index="8" name="HN4" partialcharge="0.340000">
            <externalname source="IUPAC">H3T</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="5">
          <connection atomoneindex="3" atomtwoindex="6"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="3" atomtwoindex="7"/>
          <connection atomoneindex="7" atomtwoindex="8"/>
        </connectivitymatrix>
      </molecule>
      <molecule name="3POM">
        <atomlist numberofatoms="11">
          <atom index="1" name="CN7" partialcharge="0.010000">
            <externalname source="IUPAC">C3'</externalname>
          </atom>
          <atom index="2" name="HN7" partialcharge="0.090000">
            <externalname source="IUPAC">H3'</externalname>
          </atom>
          <atom index="3" name="P" partialcharge="1.500000">
            <externalname source="IUPAC">P3</externalname>
          </atom>
          <atom index="4" name="ON3" partialcharge="-0.780000">
            <externalname source="IUPAC">O1P3</externalname>
          </atom>
          <atom index="5" name="ON3" partialcharge="-0.780000">
            <externalname source="IUPAC">O2P3</externalname>
          </atom>
          <atom index="6" name="ON2" partialcharge="-0.570000">
            <externalname source="IUPAC">O3'</externalname>
          </atom>
          <atom index="7" name="ON2" partialcharge="-0.570000">
            <externalname source="IUPAC">O3T</externalname>
          </atom>
          <atom index="8" name="CN9" partialcharge="-0.170000">
            <externalname source="IUPAC">C3T</externalname>
          </atom>
          <atom index="9" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H3T1</externalname>
          </atom>
          <atom index="10" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H3T2</externalname>
          </atom>
          <atom index="11" name="HN9" partialcharge="0.090000">
            <externalname source="IUPAC">H3T3</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="8">
          <connection atomoneindex="3" atomtwoindex="6"/>
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="3" atomtwoindex="7"/>
          <connection atomoneindex="7" atomtwoindex="8"/>
          <connection atomoneindex="8" atomtwoindex="9"/>
          <connection atomoneindex="8" atomtwoindex="10"/>
          <connection atomoneindex="8" atomtwoindex="11"/>
        </connectivitymatrix>
      </molecule>
      <molecule name="3PO3">
        <atomlist numberofatoms="7">
          <atom index="1" name="CN7" partialcharge="-0.090000">
            <externalname source="IUPAC">C3'</externalname>
          </atom>
          <atom index="2" name="HN7" partialcharge="0.090000">
            <externalname source="IUPAC">H3'</externalname>
          </atom>
          <atom index="3" name="P" partialcharge="1.100000">
            <externalname source="IUPAC">P3</externalname>
          </atom>
          <atom index="4" name="ON2" partialcharge="-0.400000">
            <externalname source="IUPAC">O3'</externalname>
          </atom>
          <atom index="5" name="ON3" partialcharge="-0.900000">
            <externalname source="IUPAC">O1P3</externalname>
          </atom>
          <atom index="6" name="ON3" partialcharge="-0.900000">
            <externalname source="IUPAC">O2P3</externalname>
          </atom>
          <atom index="7" name="ON3" partialcharge="-0.900000">
            <externalname source="IUPAC">O3P3</externalname>
          </atom>
        </atomlist>
        <connectivitymatrix numberofconnections="4">
          <connection atomoneindex="3" atomtwoindex="4"/>
          <connection atomoneindex="3" atomtwoindex="5"/>
          <connection atomoneindex="3" atomtwoindex="6"/>
          <connection atomoneindex="3" atomtwoindex="7"/>
        </connectivitymatrix>
      </molecule>
    </moleculeclass>
  </body>
</topologyfile>
