Installation
=======

####HomeBrew/LinuxBrew
To install the dependancies, the easiest way is through [HomeBrew](http://brew.sh/) (OSX) or [LinuxBrew](http://brew.sh/linuxbrew/) (Linux).
```
brew tap homebrew/science
brew install smalt samtools cpanm
sudo cpanm -f Bio::Tradis
R CMD INSTALL edgeR getopt MASS
````

####Without Homebrew
Install [SMALT](https://www.sanger.ac.uk/resources/software/smalt/) and [Samtools](http://www.htslib.org/). Ensure they are in your PATH.

```
sudo cpanm -f Bio::Tradis
R CMD INSTALL edgeR getopt MASS
```

####Windows
Install Linux.
