	Improved PeakSeq for peakROTS
	-----------------------------

Modifications by Teemu Daniel Laajala.


Installation:

1) Check that you have GCC installed

2) Check PeakSeq_v1.01/Makefile and Preprocess/Makefile
   They should use the same C libraries that R is linked
   against, typically needs no attention because
   system libraries are used.

2) Compile Peakseq:

cd PeakSeq_v1.01
make

3) Compile Preprocess:

cd Preprocess
make

4) If needed, place PeakSeq_v1.01/PeakSeq_v1.01.so and Preprocess/Preprocess.so
   to a shared directory that is seen by the R environment.

5) When using the R package, remember to set preprocess.address and
   peakseq.address to point to these .so-files.
