Retrieve listed entries from public databases

Description

This tool sequence files or other database entries from public databases. The available databases are:

  • UniProt
  • EMBL
  • Ensembl Gene
  • Ensembl Transcript
  • Ensembl Genomes Gene
  • Ensembl Genomes Transcript
  • InterPro
  • MEDLINE
  • PDB
  • RefSeq nucleoide
  • RefSeq protein
  • Taxonomy
  • Trace Archive

    • Parameters

    Database database to be used.

    Input file

    The input file should be a list of database entries or names to be retrieved from the selected database. Each entry name should be on a separate row in the entry name file.

    Details

    Note that this tool retrieves data only based on the the entry names or accession numbers. However you can use wildcard character (*) to retrieve several entries that share similar identities. For example in the case of UniProt database name ABC* would retrieve all the UniProt sequences that whose name start with ABC.

    Output

    Output is a text file. The format depends on the database selected.