CLUSTER-BUSTER
Compiled on Dec  1 2006

>NM_030754 (1000 bp)

CLUSTER 1
Location: 875 to 964
Score: 6.64
MEF2A: 2.81
NF-kappaB: 0.698
ZNF42_5-13: 0.529
RELA: 0.377
REL: 0.106
Dof2: 0.0856
MNB1A: 0.08
PBF: 0.0768
SPIB: 0.0607
SPI1: 0.0482
ZNF42_1-4: 0.0464
AGL3: 0.0437
NFKB1: 0.0342
Klf4: 0.0325
RUSH1-alfa: 0.0313
TCF11-MafG: 0.0223
c-ETS: 0.0211
ID1: 0.0203
TAL1-TCF3: 0.0183
HMG-1: 0.0163
Dorsal_2: 0.0145
Hunchback: 0.0134
Pax5: 0.0125
Dorsal_1: 0.0124
SP1: 0.011
HMG-IY: 0.0105
RUNX1: 0.00979
MA0021: 0.00919
En1: 0.00889
deltaEF1: 0.00865
ELK1: 0.00829
E74A: 0.00817
Gata1: 0.00809
Pax2: 0.00804
Macho-1: 0.00785
GATA2: 0.00757
SU_h: 0.00679
ARR10: 0.00616
GABPA: 0.0059
Spz1: 0.00448
SOX9: 0.00436
Pbx: 0.00428
Staf: 0.00423
bZIP910: 0.00399
Snail: 0.00396
Broad-complex_4: 0.0039
YY1: 0.0037
HNF4: 0.00361
Myf: 0.00345
RORA: 0.0031
NR3C1: 0.00277
Foxa2: 0.00274
FOXL1: 0.00267
TFAP2A: 0.00259
Broad-complex_3: 0.00255
Broad-complex_2: 0.00252
HAND1-TCF3: 0.00247
Agamous: 0.0022
ESR1: 0.00215
ELK4: 0.00205
MafB: 0.00184
NR2F1: 0.00175
Ubx: 0.00174
FOXC1: 0.00149
MAX: 0.00135
GATA3: 0.00134
Broad-complex_1: 0.00125
cEBP: 0.00119
Evi1: 0.0011
Pax4: 0.0011
GAMYB: 0.00107
E2F1: 0.00104
Nkx2-5: 0.00104
Bapx1: 0.00103
Mycn: 0.000864
TBP: 0.000835
SRY: 0.000753
CF2-II: 0.000748
Arnt-Ahr: 0.000716
TEAD: 0.000673
CFI-USP: 0.000658
CREB1: 0.000652
Chop-cEBP: 0.000627
USF1: 0.000621
NHLH1: 0.000603
Arnt: 0.000563
Gfi: 0.000515
RREB1: 0.000506
FOXD1: 0.000458
Pax6: 0.000449
Myb: 0.000421
SQUA: 0.000405
Prrx2: 0.00036
Sox5: 0.000326
Sox17: 0.000292
MYC-MAX: 0.000289
Fos: 0.000288
IRF1: 0.000208
Athb-1: 0.000198
HLF: 0.000189
ABI4: 0.000182
MYB.ph3: 0.000167
IRF2: 0.000103
TCF1: 8.44e-05
FOXF2: 8.2e-05
Foxq1: 5.14e-05
Foxd3: 4.59e-05
Hox11-CTF1: 4.41e-05
RXR-VDR: 4.22e-05
TP53: 3.82e-05
T: 3.72e-05
Ar: 2.24e-05
Roaz: 2.2e-05
SRF: 2.11e-05
FOXI1: 1.88e-05
NF-Y: 1.75e-05
bZIP911: 1.68e-05
NFIL3: 1.33e-05
ATHB5: 5.66e-06
RORA1: 1.44e-06
PPARG: 9.86e-07
PPARG-RXRA: 5.69e-08
NR1H2-RXR: 3.84e-08
GTAGGGGAAAtgacctgcaGGGACTTTCCCCAgggaccacatccAGCTTTtcttccctcccaagagaccagcaaggctcaCTATAAATAG
ZNF42_5-13	875	884	+	8.87	gtaggggaaa
ZNF42_1-4	877	882	+	6.43	agggga
SPIB	877	883	+	6.98	aggggaa
Dorsal_2	894	903	+	6.98	gggactttcc
NF-kappaB	894	903	+	11.3	gggactttcc
NF-kappaB	894	903	-	6.13	ggaaagtccc
REL	894	903	+	9.51	gggactttcc
NFKB1	894	904	+	7.82	gggactttccc
NFKB1	894	904	-	7.61	gggaaagtccc
RELA	894	903	+	10.8	gggactttcc
NF-kappaB	895	904	-	7.38	gggaaagtcc
MA0021	896	901	-	6.52	aaagtc
PBF	897	901	-	6.05	aaagt
ZNF42_1-4	901	906	-	6.21	tgggga
Dof2	919	924	-	6.92	aaagct
MNB1A	920	924	-	6.86	aaagc
PBF	920	924	-	6.82	aaagc
AGL3	955	964	+	9.56	ctataaatag
AGL3	955	964	-	8.73	ctatttatag
MEF2A	955	964	+	9.23	ctataaatag
MEF2A	955	964	-	13	ctatttatag
FOXL1	956	963	+	6.33	tataaata

>NM_005203 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080798 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080799 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080800 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080801 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080802 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080803 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080804 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080805 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080806 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080807 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080808 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080809 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080810 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080811 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080812 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080813 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080814 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_080815 (1000 bp)

CLUSTER 1
Location: 716 to 916
Score: 9.14
MEF2A: 2.13
T: 1.1
Foxd3: 0.35
RREB1: 0.278
Broad-complex_1: 0.246
Pax2: 0.211
E74A: 0.205
Bapx1: 0.205
FOXI1: 0.197
SP1: 0.196
FOXF2: 0.153
SPI1: 0.103
Foxq1: 0.0943
Klf4: 0.0927
ESR1: 0.075
ZNF42_1-4: 0.0686
Macho-1: 0.0674
ABI4: 0.0668
c-ETS: 0.0592
GABPA: 0.0568
TBP: 0.046
TFAP2A: 0.0457
MNB1A: 0.0446
FOXL1: 0.0424
Foxa2: 0.041
Myf: 0.037
SQUA: 0.0359
ZNF42_5-13: 0.0302
Snail: 0.0289
PBF: 0.0232
Broad-complex_4: 0.0204
Dof2: 0.0174
En1: 0.0171
Arnt-Ahr: 0.0166
RUSH1-alfa: 0.0154
deltaEF1: 0.0145
IRF1: 0.0144
HMG-1: 0.0141
MA0021: 0.0124
MAX: 0.0117
Chop-cEBP: 0.0112
ELK1: 0.0103
ID1: 0.0102
MafB: 0.0101
HNF4: 0.0101
USF1: 0.00961
Spz1: 0.00917
TCF11-MafG: 0.00913
Arnt: 0.00904
ARR10: 0.00872
GATA3: 0.0085
HMG-IY: 0.0085
Pax5: 0.00844
E2F1: 0.00819
SRY: 0.00811
Gata1: 0.00796
NFKB1: 0.00778
Broad-complex_2: 0.00754
Fos: 0.00735
Nkx2-5: 0.00676
Mycn: 0.00657
FOXD1: 0.00644
REL: 0.00625
SPIB: 0.00568
RELA: 0.00542
FOXC1: 0.00531
Dorsal_1: 0.00516
Hunchback: 0.00512
Staf: 0.0051
Pax4: 0.00507
Dorsal_2: 0.00506
TEAD: 0.00453
Myb: 0.00428
AGL3: 0.00409
YY1: 0.00388
HAND1-TCF3: 0.00369
GATA2: 0.00365
cEBP: 0.0035
ELK4: 0.00349
TCF1: 0.00339
NHLH1: 0.00321
Sox5: 0.00321
Broad-complex_3: 0.00306
CFI-USP: 0.00292
RXR-VDR: 0.00216
CF2-II: 0.00213
Ubx: 0.00203
HLF: 0.00184
SOX9: 0.00182
CREB1: 0.00171
PPARG: 0.00164
MYB.ph3: 0.0016
MYC-MAX: 0.00142
Sox17: 0.0014
Gfi: 0.0014
NF-kappaB: 0.00137
GAMYB: 0.00135
NFIL3: 0.0013
Pax6: 0.00126
SU_h: 0.00115
Agamous: 0.00114
RORA: 0.00099
bZIP910: 0.000625
NR2F1: 0.000612
Hox11-CTF1: 0.000545
IRF2: 0.000483
Prrx2: 0.000465
NR3C1: 0.000408
RUNX1: 0.000316
Pbx: 0.00023
Athb-1: 0.000205
bZIP911: 0.000128
Ar: 0.000126
Roaz: 8.88e-05
TAL1-TCF3: 6.25e-05
TP53: 3.98e-05
RORA1: 3.62e-05
NF-Y: 3.03e-05
SRF: 2.21e-05
ATHB5: 1.89e-05
Evi1: 7.14e-06
PPARG-RXRA: 1.23e-06
NR1H2-RXR: 3.61e-07
CTCGGTGTGAAtccggagAAAGAGAGGGaagtgcagcgccagcTCCACTCCACACCCCCTTCCTGCCTATAAATAACCCCAAgTGTCACTTCAaagaggacggggagcgcggcagaggggctcccgggccggcgggctggggccgccggaCCTGCTCACCACGCCCCCcaccctgggcGAGTTTGCATAAATAAACAAATC
T	716	726	+	9.57	ctcggtgtgaa
Klf4	734	743	+	6.04	aaagagaggg
Bapx1	759	767	-	6.76	tggagtgga
RREB1	760	779	+	8.09	ccactccacacccccttcct
GABPA	772	781	-	6.44	gcaggaaggg
E74A	774	780	-	8.08	caggaag
ELK1	774	783	-	6.4	aggcaggaag
SPI1	774	779	-	7.05	aggaag
c-ETS	774	779	+	6.71	cttcct
Broad-complex_1	775	788	-	7.2	tttataggcaggaa
TBP	775	789	-	6.88	atttataggcaggaa
TBP	777	791	-	7.47	ttatttataggcagg
SQUA	778	791	-	6.95	ttatttataggcag
TCF1	780	793	-	7.58	ggttatttataggc
AGL3	782	791	+	6.39	ctataaataa
AGL3	782	791	-	7.33	ttatttatag
Broad-complex_4	782	792	+	7.98	ctataaataac
CF2-II	782	791	+	7.2	ctataaataa
FOXI1	782	793	-	10.1	ggttatttatag
MEF2A	782	791	+	9.45	ctataaataa
MEF2A	782	791	-	13.4	ttatttatag
TBP	782	796	+	10.2	ctataaataacccca
Dorsal_1	783	794	-	6.94	gggttatttata
FOXL1	783	790	+	8.66	tataaata
FOXL1	783	790	-	7.45	tatttata
Foxq1	783	793	-	7.65	ggttatttata
FOXD1	784	791	+	6.52	ataaataa
Macho-1	789	797	-	6.11	ttggggtta
Pax2	799	806	+	7.68	tgtcactt
Bapx1	800	808	-	6.86	tgaagtgac
ESR1	866	883	+	6.36	cctgctcaccacgccccc
SP1	873	882	-	7.18	ggggcgtggt
cEBP	894	905	-	7.25	ttatgcaaactc
NFIL3	895	905	-	6.08	ttatgcaaact
TBP	895	909	-	7.3	ttatttatgcaaact
HLF	896	907	+	6.85	gtttgcataaat
SQUA	896	909	-	8.74	ttatttatgcaaac
FOXF2	897	910	+	10.9	tttgcataaataaa
FOXL1	897	904	+	7.99	tttgcata
HMG-IY	898	913	+	6.72	ttgcataaataaacaa
TCF1	899	912	-	7.7	tgtttatttatgca
Foxd3	900	911	-	9.1	gtttatttatgc
FOXI1	900	911	-	8.05	gtttatttatgc
HMG-IY	900	915	+	8.02	gcataaataaacaaat
Foxa2	900	911	-	7.3	gtttatttatgc
Hunchback	900	909	+	8.13	gcataaataa
SQUA	900	913	+	7.51	gcataaataaacaa
TBP	900	914	+	8.35	gcataaataaacaaa
FOXF2	901	914	+	12.7	cataaataaacaaa
FOXL1	901	908	+	6.07	cataaata
Foxq1	901	911	-	6.54	gtttatttatg
HMG-IY	901	916	+	7.14	cataaataaacaaatc
Broad-complex_1	902	915	+	8.92	ataaataaacaaat
FOXD1	902	909	+	6.72	ataaataa
SQUA	902	915	+	11.3	ataaataaacaaat
SRY	902	910	+	7.48	ataaataaa
TBP	902	916	+	6.64	ataaataaacaaatc
Broad-complex_1	903	916	+	13.2	taaataaacaaatc
Broad-complex_3	903	913	+	7.44	taaataaacaa
Hunchback	903	912	+	6.22	taaataaaca
Broad-complex_2	904	911	-	6.22	gtttattt
Broad-complex_4	904	914	+	10.4	aaataaacaaa
Foxd3	904	915	-	13.6	atttgtttattt
FOXI1	904	915	-	12.9	atttgtttattt
Foxa2	904	915	-	11.6	atttgtttattt
Hunchback	904	913	+	6.2	aaataaacaa
ID1	904	915	-	6.1	atttgtttattt
Foxq1	905	915	-	12	atttgtttatt
FOXD1	906	913	+	8.63	ataaacaa
SRY	906	914	+	9.24	ataaacaaa

>NM_003302 (1000 bp)

CLUSTER 1
Location: 876 to 985
Score: 7.22
TEAD: 1.27
ID1: 0.719
AGL3: 0.643
bZIP910: 0.44
CREB1: 0.355
bZIP911: 0.306
Hunchback: 0.293
MAX: 0.184
USF1: 0.162
ZNF42_1-4: 0.137
SP1: 0.113
Broad-complex_4: 0.106
Mycn: 0.0981
Arnt: 0.0904
SPIB: 0.0569
HAND1-TCF3: 0.0538
Prrx2: 0.0505
MYC-MAX: 0.0489
HMG-IY: 0.0488
Agamous: 0.0485
Dof2: 0.0442
SQUA: 0.0412
Klf4: 0.0401
IRF1: 0.0374
TCF11-MafG: 0.0369
MNB1A: 0.0322
PBF: 0.0284
Broad-complex_1: 0.0276
Dorsal_2: 0.026
MA0021: 0.0251
HLF: 0.0234
Evi1: 0.0233
c-ETS: 0.0224
Foxd3: 0.0209
Broad-complex_3: 0.0202
E74A: 0.019
SPI1: 0.0184
HMG-1: 0.017
Arnt-Ahr: 0.017
RUSH1-alfa: 0.0161
Macho-1: 0.0156
CFI-USP: 0.015
En1: 0.0147
MEF2A: 0.0135
Ubx: 0.0124
Pax2: 0.00963
ZNF42_5-13: 0.00895
GABPA: 0.00878
MafB: 0.00878
NR3C1: 0.0072
Dorsal_1: 0.00668
Broad-complex_2: 0.00651
ESR1: 0.00645
MYB.ph3: 0.00604
Pax4: 0.00569
ELK1: 0.00467
YY1: 0.00443
SRY: 0.00409
IRF2: 0.00407
Gata1: 0.00395
deltaEF1: 0.00374
GATA2: 0.00361
GAMYB: 0.00307
REL: 0.00285
E2F1: 0.00282
RUNX1: 0.00275
Spz1: 0.00236
NF-kappaB: 0.00201
NFKB1: 0.00156
Foxa2: 0.00149
FOXD1: 0.00148
Nkx2-5: 0.00136
GATA3: 0.00127
Snail: 0.00122
FOXL1: 0.00121
TFAP2A: 0.0011
Fos: 0.00109
FOXC1: 0.00109
Pax5: 0.000935
NFIL3: 0.000917
Sox17: 0.000917
Foxq1: 0.000789
RORA: 0.00078
Athb-1: 0.000744
TCF1: 0.000733
ARR10: 0.000722
FOXI1: 0.000673
FOXF2: 0.000668
Bapx1: 0.000636
TBP: 0.000625
Staf: 0.000613
SRF: 0.000585
ELK4: 0.000512
SOX9: 0.000452
Sox5: 0.000432
HNF4: 0.000349
NR2F1: 0.000337
cEBP: 0.000304
RELA: 0.000288
ABI4: 0.000267
Gfi: 0.000236
SU_h: 0.000212
Myb: 0.000164
Pax6: 0.000139
ATHB5: 0.000122
Chop-cEBP: 9.29e-05
Myf: 8.93e-05
Pbx: 5.88e-05
RXR-VDR: 5.19e-05
NF-Y: 3.7e-05
PPARG: 3.07e-05
TP53: 1.54e-05
RREB1: 1.46e-05
RORA1: 1.35e-05
Hox11-CTF1: 1.22e-05
NHLH1: 7.81e-06
Ar: 7.68e-06
TAL1-TCF3: 4.65e-06
CF2-II: 3.05e-06
T: 2.73e-06
Roaz: 1.33e-06
PPARG-RXRA: 3.95e-08
NR1H2-RXR: 1.05e-08
GGCCACGTGACCCTCCCCCAGGAATGTGGTGACGTCATCGGAGGCGTGGTcgTCCCCAAAATTAGGgaggaAGAGGAAAAAAAAAAGCCAGAAAAAGTTTTCTTTTCTGG
MAX	876	885	+	8.25	ggccacgtga
MYC-MAX	876	886	+	6.27	ggccacgtgac
bZIP911	876	887	-	9.12	ggtcacgtggcc
MYC-MAX	877	887	-	7.16	ggtcacgtggc
MAX	878	887	-	7.98	ggtcacgtgg
USF1	878	884	-	8.21	cacgtgg
ESR1	878	895	+	6.88	ccacgtgaccctccccca
Arnt	879	884	+	7.49	cacgtg
Arnt	879	884	-	7.49	cacgtg
USF1	879	885	+	7.85	cacgtga
Mycn	879	884	+	7.57	cacgtg
Mycn	879	884	-	7.57	cacgtg
CFI-USP	880	889	-	6.12	agggtcacgt
SP1	885	894	-	7.76	gggggagggt
Klf4	886	895	-	6.23	tgggggaggg
ZNF42_1-4	889	894	-	6.49	ggggga
TEAD	892	903	-	11	cacattcctggg
CREB1	900	911	+	10.1	tgtggtgacgtc
HLF	903	914	+	8.34	ggtgacgtcatc
HLF	903	914	-	6.38	gatgacgtcacc
bZIP911	903	914	+	6.02	ggtgacgtcatc
bZIP911	903	914	-	8.77	gatgacgtcacc
bZIP910	904	910	+	7.58	gtgacgt
CREB1	906	917	-	8.58	tccgatgacgtc
bZIP910	907	913	-	9.09	atgacgt
TCF11-MafG	909	914	-	6.94	gatgac
SP1	916	925	+	6.66	gaggcgtggt
ZNF42_1-4	928	933	-	7.85	tgggga
AGL3	931	940	+	9.3	ccaaaattag
AGL3	931	940	-	6.27	ctaattttgg
Agamous	931	941	+	6.68	ccaaaattagg
Prrx2	935	939	+	6.88	aatta
SPIB	947	953	+	6.4	agaggaa
Hunchback	950	959	+	6.21	ggaaaaaaaa
Hunchback	951	960	+	7.26	gaaaaaaaaa
Dof2	959	964	+	6.07	aaagcc
HAND1-TCF3	960	969	-	6.46	tttctggctt
Foxd3	968	979	+	6.93	aaaagttttctt
Broad-complex_4	969	979	-	6.34	aagaaaacttt
Broad-complex_1	970	983	-	6.77	agaaaagaaaactt
Broad-complex_3	971	981	-	6.88	aaaagaaaact
Evi1	971	984	-	7.36	cagaaaagaaaact
IRF1	971	982	-	7.59	gaaaagaaaact
Klf4	972	981	-	6.22	aaaagaaaac
IRF1	972	983	-	6.11	agaaaagaaaac
SQUA	972	985	-	7.82	ccagaaaagaaaac
ID1	972	983	+	7.98	gttttcttttct
Hunchback	973	982	-	7.54	gaaaagaaaa
ID1	973	984	+	10.4	ttttcttttctg
Broad-complex_4	974	984	-	8.69	cagaaaagaaa
ID1	974	985	+	6.01	tttcttttctgg
Dof2	975	980	-	6.61	aaagaa
Hunchback	975	984	-	7.81	cagaaaagaa
MNB1A	976	980	-	6.27	aaaga
RUSH1-alfa	977	984	+	6.41	cttttctg

>NM_001554 (1000 bp)

CLUSTER 1
Location: 41 to 968
Score: 6.75
TBP: 2.23
RREB1: 2.22
HAND1-TCF3: 1.05
FOXI1: 0.74
TEAD: 0.711
Foxd3: 0.629
SPIB: 0.574
HMG-IY: 0.57
Foxa2: 0.528
Staf: 0.513
Hunchback: 0.45
HMG-1: 0.427
deltaEF1: 0.426
Broad-complex_1: 0.408
Foxq1: 0.399
SP1: 0.383
NR2F1: 0.38
Klf4: 0.37
ZNF42_1-4: 0.296
Broad-complex_3: 0.279
SPI1: 0.274
PBF: 0.268
MNB1A: 0.265
Fos: 0.254
Dof2: 0.251
NFKB1: 0.248
Broad-complex_4: 0.232
NR3C1: 0.226
CREB1: 0.212
RELA: 0.207
ABI4: 0.202
ZNF42_5-13: 0.195
MA0021: 0.192
Pax4: 0.192
bZIP910: 0.184
Arnt-Ahr: 0.181
Prrx2: 0.173
FOXD1: 0.163
c-ETS: 0.159
HNF4: 0.155
ID1: 0.155
Bapx1: 0.15
Dorsal_2: 0.145
Pax6: 0.139
Macho-1: 0.138
Pax2: 0.134
Dorsal_1: 0.134
SRY: 0.133
SOX9: 0.133
MafB: 0.127
NF-kappaB: 0.12
GAMYB: 0.118
E74A: 0.118
MYB.ph3: 0.117
REL: 0.117
RUSH1-alfa: 0.116
TFAP2A: 0.116
TCF1: 0.102
En1: 0.102
cEBP: 0.101
Nkx2-5: 0.0981
YY1: 0.0957
SU_h: 0.0956
ELK1: 0.0872
HLF: 0.084
Pax5: 0.0759
GABPA: 0.0752
Gata1: 0.0738
Agamous: 0.0735
Ubx: 0.073
RUNX1: 0.0672
SQUA: 0.0664
Broad-complex_2: 0.0659
ESR1: 0.0657
GATA3: 0.064
Pbx: 0.0638
FOXL1: 0.0628
ARR10: 0.0627
Hox11-CTF1: 0.0595
TCF11-MafG: 0.0545
GATA2: 0.0495
FOXC1: 0.0489
E2F1: 0.0487
Chop-cEBP: 0.0461
FOXF2: 0.0431
CFI-USP: 0.0429
Spz1: 0.0413
Athb-1: 0.0373
Myb: 0.0372
Sox17: 0.0369
IRF1: 0.0365
Snail: 0.0349
Sox5: 0.0344
AGL3: 0.0312
Gfi: 0.029
Myf: 0.0268
Arnt: 0.0251
Mycn: 0.0214
bZIP911: 0.0171
RORA: 0.0142
MAX: 0.0127
USF1: 0.0117
NFIL3: 0.00987
Evi1: 0.00862
IRF2: 0.00828
MYC-MAX: 0.00753
ELK4: 0.00672
TAL1-TCF3: 0.0054
RXR-VDR: 0.00537
Ar: 0.00532
NHLH1: 0.00492
NF-Y: 0.00361
CF2-II: 0.00351
RORA1: 0.00264
TP53: 0.00242
Roaz: 0.00199
PPARG: 0.00198
SRF: 0.00175
ATHB5: 0.00167
T: 0.00164
MEF2A: 0.00147
PPARG-RXRA: 0.000133
NR1H2-RXR: 1.01e-05
GGAGAACTCCCCGCGTTCGTTTCCTCTcggacttccaacccaggcagtgggctggaactAAAGTGGGAACCTCCAAAAACAAACAAGTACAACatacCCAAAAGAGGGAAGGgctggaggagtgggggagacctctgcCTGGGAATTTGCCAGACGATGGGCAAGTTTCCCCCCGCCCCACCCCCCCCCCGCCTtTTCATTCATAAATGCCACTGtGGGTATTAATTTGCaattcacTGAACTTTGCTAATAAACATCAtgccAAAGCTTTGGGACTTGTTCCGAACACGCCtcttTGAAGTCCACaaataTTCCTGACTCAGagacacactcctcttccccgttctactctttcaacagataacttgcctctcaccttcgcTGTAAAAAAGCAAACAGCTcactgccTTCCCGGGTGAGGGCTTCAGTGGCtgcccggtcaactcgcatCACCAAACAAAACGACTTTTGTTCctccctctcaggtcctcccacccacccagtcCAGGCAAAGTTCTGAACTGGcccccctcgcccctcacgaccctccaactaccatcaccaccatcacgccccaaagaacccttcccaacataaGTCGTAATTTAAGGTGGAAAAAACGAACTGTTTTCTTGACGGGTCTGGGACacacacacacacacacacacacacacacacaccccccGAACTGTTTTCTTGACGGGTCTGGGAGACAGACacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacaAAGGTGcaatggagccaggggaggcgcttggcagcagcccgcgccaaccAGCATTCCTGAGATGTTTGAGAATTCTGGAACGCGcagacagagccGACGTCACTGCAacacgCGGCGCCTCCgccggcCCGTATAAAAGGCGGGC
NFKB1	41	51	-	7.04	gggagttctcc
Staf	44	63	+	8.22	gaactccccgcgttcgtttc
ZNF42_1-4	48	53	-	6.03	cgggga
IRF1	53	64	-	6.23	ggaaacgaacgc
GAMYB	55	64	-	6.87	ggaaacgaac
E74A	60	66	-	6.14	gaggaaa
c-ETS	60	65	+	6.97	tttcct
SPIB	61	67	-	8.94	agaggaa
MA0021	100	105	+	6.1	aaagtg
SU_h	101	116	+	6.26	aagtgggaacctccaa
Foxd3	117	128	-	8.27	acttgtttgttt
FOXI1	117	128	-	9.24	acttgtttgttt
Foxa2	117	128	-	7.96	acttgtttgttt
HMG-1	125	133	-	7.05	gttgtactt
Agamous	138	148	+	6.2	ccaaaagaggg
Klf4	139	148	+	6.03	caaaagaggg
Klf4	143	152	+	7.5	agagggaagg
SPI1	146	151	+	6.36	gggaag
Hox11-CTF1	179	192	-	6.03	tggcaaattcccag
Hox11-CTF1	180	193	+	6.24	tgggaatttgccag
NF-kappaB	181	190	+	6.86	gggaatttgc
Pax4	181	210	-	7.03	ggaaacttgcccatcgtctggcaaattccc
RELA	181	190	+	7.81	gggaatttgc
HAND1-TCF3	187	196	-	8.25	cgtctggcaa
ZNF42_5-13	195	204	+	6.02	cgatgggcaa
NR2F1	197	210	-	6.49	ggaaacttgcccat
Pax4	200	229	+	7.38	ggcaagtttccccccgccccaccccccccc
Pax4	201	230	+	8.27	gcaagtttccccccgccccacccccccccc
RREB1	209	228	+	6.33	ccccccgccccacccccccc
RREB1	210	229	+	8.2	cccccgccccaccccccccc
RREB1	211	230	+	11.5	ccccgccccacccccccccc
RREB1	213	232	+	6.48	ccgccccaccccccccccgc
RREB1	215	234	+	6.61	gccccaccccccccccgcct
SP1	220	229	-	7.18	gggggggggt
Pax6	236	249	+	6.42	ttcattcataaatg
TBP	241	255	+	6.13	tcataaatgccactg
FOXI1	257	268	+	6.51	gggtattaattt
TCF1	257	270	+	6.81	gggtattaatttgc
Prrx2	263	267	-	6.59	aatta
NR2F1	278	291	+	8.86	tgaactttgctaat
HNF4	278	290	-	6.77	ttagcaaagttca
Broad-complex_4	288	298	+	6.29	taataaacatc
FOXI1	288	299	-	8.01	tgatgtttatta
Foxq1	289	299	-	9.09	tgatgtttatt
FOXD1	290	297	+	6.58	ataaacat
Dof2	304	309	+	6.54	aaagct
MNB1A	304	308	+	6.52	aaagc
PBF	304	308	+	6.48	aaagc
Dof2	306	311	-	6.25	aaagct
HMG-IY	307	322	-	8.11	gaacaagtcccaaagc
MNB1A	307	311	-	6.08	aaagc
PBF	307	311	-	6.03	aaagc
SPI1	319	324	-	6.19	cggaac
HMG-1	324	332	-	6.12	ggcgtgttc
Dorsal_2	337	346	-	6.36	gtggacttca
SPIB	352	358	-	6.13	tcaggaa
Fos	355	362	+	6.4	ctgactca
Fos	356	363	-	7.41	ctgagtca
Dorsal_1	423	434	-	6.09	tgcttttttaca
FOXD1	424	431	+	7.4	gtaaaaaa
HMG-IY	424	439	+	7.69	gtaaaaaagcaaacag
Foxd3	426	437	-	6.34	gtttgctttttt
Dof2	429	434	+	6.94	aaagca
MA0021	429	434	+	6.46	aaagca
MNB1A	429	433	+	6.43	aaagc
PBF	429	433	+	6.38	aaagc
Foxa2	430	441	-	7.45	agctgtttgctt
Pax6	449	462	+	6.23	ttcccgggtgaggg
TFAP2A	455	463	-	6.44	gccctcacc
Bapx1	464	472	+	6.24	ttcagtggc
FOXI1	491	502	-	6.1	ttttgtttggtg
Broad-complex_3	494	504	+	6.42	caaacaaaacg
MA0021	504	509	-	6.58	aaagtc
SOX9	506	514	-	7.09	gaacaaaag
HNF4	546	558	+	6.21	caggcaaagttct
NR3C1	548	565	+	7.33	ggcaaagttctgaactgg
PBF	551	555	+	6.22	aaagt
HMG-1	638	646	+	7.77	gtcgtaatt
Prrx2	642	646	-	7.34	aatta
HMG-IY	645	660	+	6.84	tttaaggtggaaaaaa
deltaEF1	648	653	-	8.02	cacctt
Foxd3	654	665	-	6.38	gttcgttttttc
NR3C1	655	672	-	6.74	gaaaacagttcgtttttt
Broad-complex_1	662	675	-	6.82	caagaaaacagttc
MYB.ph3	662	670	+	7.54	gaactgttt
Foxd3	663	674	+	8.77	aactgttttctt
Foxa2	663	674	+	8.54	aactgttttctt
Broad-complex_4	664	674	-	6.69	aagaaaacagt
Pax5	664	683	-	6.68	agacccgtcaagaaaacagt
SRY	664	672	-	6.87	gaaaacagt
FOXD1	665	672	-	6.23	gaaaacag
Klf4	665	674	-	6.1	aagaaaacag
Broad-complex_3	666	676	-	7.56	tcaagaaaaca
Hunchback	666	675	-	8.31	caagaaaaca
Pbx	668	679	-	6.63	ccgtcaagaaaa
CREB1	669	680	+	6.96	tttcttgacggg
Hunchback	670	679	-	6.62	ccgtcaagaa
SP1	678	687	+	7.62	gggtctggga
HAND1-TCF3	679	688	+	8.42	ggtctgggac
Broad-complex_1	726	739	-	8.05	caagaaaacagttc
MYB.ph3	726	734	+	8.14	gaactgttt
MYB.ph3	726	734	-	6.32	aaacagttc
Foxq1	727	737	+	6.29	aactgttttct
Foxd3	727	738	+	9.93	aactgttttctt
Foxa2	727	738	+	9.71	aactgttttctt
Broad-complex_4	728	738	-	8.1	aagaaaacagt
Pax5	728	747	-	8.24	agacccgtcaagaaaacagt
FOXF2	728	741	-	6.99	gtcaagaaaacagt
SRY	728	736	-	7.87	gaaaacagt
Sox5	728	734	-	6.32	aaacagt
FOXD1	729	736	-	7.48	gaaaacag
Klf4	729	738	-	7.76	aagaaaacag
Broad-complex_3	730	740	-	8.9	tcaagaaaaca
Dof2	730	735	-	6.1	aaaaca
Evi1	730	743	-	6.74	ccgtcaagaaaaca
Hunchback	730	739	-	9.79	caagaaaaca
Staf	730	749	-	6.56	ccagacccgtcaagaaaaca
HMG-1	731	739	+	7.02	gttttcttg
Hunchback	731	740	-	6.82	tcaagaaaac
RUSH1-alfa	731	738	+	7.01	gttttctt
Pbx	732	743	-	7.6	ccgtcaagaaaa
CREB1	733	744	+	7.55	tttcttgacggg
E74A	733	739	-	6.01	caagaaa
Hunchback	734	743	-	7.16	ccgtcaagaa
ESR1	741	758	-	6.26	gtctgtctcccagacccg
SP1	742	751	+	7.1	gggtctggga
HAND1-TCF3	743	752	+	8.66	ggtctgggag
ZNF42_5-13	744	753	+	6.14	gtctgggaga
deltaEF1	824	829	-	7.15	cacctt
TEAD	873	884	+	9.42	agcattcctgag
E74A	876	882	-	6.94	caggaat
c-ETS	876	881	+	6.15	attcct
SPIB	877	883	-	8.25	tcaggaa
Pax5	880	899	-	6.35	agaattctcaaacatctcag
RUSH1-alfa	882	889	-	6.29	aacatctc
ARR10	883	890	+	6.02	agatgttt
Broad-complex_1	885	898	+	7.52	atgtttgagaattc
HMG-IY	885	900	-	6.71	cagaattctcaaacat
Broad-complex_1	886	899	-	8.58	agaattctcaaaca
HLF	886	897	+	6.91	tgtttgagaatt
SU_h	887	902	+	6.19	gtttgagaattctgga
Staf	888	907	-	8.82	cgcgttccagaattctcaaa
cEBP	888	899	+	6.55	tttgagaattct
HAND1-TCF3	895	904	+	7.18	attctggaac
CREB1	919	930	-	7.43	tgcagtgacgtc
bZIP910	920	926	-	7.63	gtgacgt
Pax2	921	928	+	6.12	cgtcactg
ABI4	936	945	+	6.93	cggcgcctcc
Hunchback	952	961	+	6.02	ccgtataaaa
TBP	954	968	+	11	gtataaaaggcgggc

>NM_006434 (1000 bp)

CLUSTER 1
Location: 710 to 879
Score: 6.89
SRF: 2.08
IRF1: 1.83
MYC-MAX: 0.557
RUNX1: 0.532
Snail: 0.316
MAX: 0.292
USF1: 0.14
Mycn: 0.117
deltaEF1: 0.105
Arnt: 0.0899
Pbx: 0.0863
CFI-USP: 0.0834
RORA: 0.0824
Sox17: 0.0806
HNF4: 0.0767
AGL3: 0.0589
MafB: 0.0546
c-ETS: 0.0423
MA0021: 0.0378
IRF2: 0.0371
GATA2: 0.037
Nkx2-5: 0.0343
HAND1-TCF3: 0.0337
ELK4: 0.0314
GABPA: 0.0306
En1: 0.0298
Broad-complex_2: 0.0273
Gata1: 0.0257
Agamous: 0.0257
TFAP2A: 0.0248
Ubx: 0.0243
SRY: 0.0239
ESR1: 0.0231
RREB1: 0.0226
Athb-1: 0.0223
TBP: 0.0198
Bapx1: 0.0194
RORA1: 0.0174
Macho-1: 0.0172
TCF11-MafG: 0.0167
Pax2: 0.0161
NR2F1: 0.0161
cEBP: 0.0153
Arnt-Ahr: 0.0148
Fos: 0.0147
Dof2: 0.0145
PBF: 0.014
Sox5: 0.014
SU_h: 0.0135
SQUA: 0.0133
Broad-complex_4: 0.0125
bZIP910: 0.0124
ATHB5: 0.012
ELK1: 0.0119
MYB.ph3: 0.0113
SPI1: 0.0111
FOXL1: 0.011
GAMYB: 0.0108
ZNF42_1-4: 0.0104
RUSH1-alfa: 0.0102
CREB1: 0.00976
GATA3: 0.0095
E74A: 0.009
HMG-1: 0.00894
Broad-complex_3: 0.00874
MNB1A: 0.00874
PPARG: 0.00862
TCF1: 0.00862
SP1: 0.00808
YY1: 0.0076
Klf4: 0.00737
Staf: 0.0072
FOXC1: 0.00705
ID1: 0.00688
Hunchback: 0.00597
SOX9: 0.00586
Chop-cEBP: 0.00578
Dorsal_2: 0.00543
Gfi: 0.00517
ARR10: 0.00516
Spz1: 0.00495
Myb: 0.00483
MEF2A: 0.00482
E2F1: 0.00471
ZNF42_5-13: 0.00455
NFIL3: 0.00421
REL: 0.00403
TEAD: 0.0039
SPIB: 0.00369
HLF: 0.0036
Foxq1: 0.00342
FOXI1: 0.00332
FOXD1: 0.0031
Evi1: 0.00305
Broad-complex_1: 0.00276
Dorsal_1: 0.00253
Prrx2: 0.00253
bZIP911: 0.00248
Pax4: 0.00224
HMG-IY: 0.00202
RELA: 0.00195
Foxd3: 0.00188
Pax5: 0.00166
NF-kappaB: 0.00149
Myf: 0.00147
Foxa2: 0.000916
RXR-VDR: 0.000836
TAL1-TCF3: 0.000779
Pax6: 0.000774
CF2-II: 0.000613
NFKB1: 0.000596
PPARG-RXRA: 0.000596
NR3C1: 0.000476
FOXF2: 0.000419
ABI4: 0.000402
NF-Y: 0.000265
Hox11-CTF1: 0.000233
Ar: 0.000194
T: 0.000151
NHLH1: 0.000122
NR1H2-RXR: 4.34e-05
Roaz: 6.98e-06
TP53: 5.56e-06
AACCACGTGCACTCGTgtagcttgaggtttttaatagaatgtttgaaagggatgtcggataacatcaGCACCAAATATGGGCAACAAAACTGAAACCAGTGAgGTTGAGTGATGTGCCCAAGGTCACAATAATatgtGGGTGACCACAAACCAGAAGCCtggcCAGGTGa
MAX	710	719	+	10.1	aaccacgtgc
MYC-MAX	710	720	+	8.54	aaccacgtgca
MYC-MAX	711	721	-	10.7	gtgcacgtggt
USF1	712	718	-	9.35	cacgtgg
Arnt	713	718	+	8.32	cacgtg
Arnt	713	718	-	8.32	cacgtg
USF1	713	719	+	7.58	cacgtgc
Mycn	713	718	+	8.4	cacgtg
Mycn	713	718	-	8.4	cacgtg
Chop-cEBP	714	725	+	6.19	acgtgcactcgt
E2F1	777	784	-	6.08	tttggtgc
SRF	778	789	+	7.4	caccaaatatgg
Agamous	779	789	-	8.11	ccatatttggt
AGL3	780	789	+	9.16	ccaaatatgg
AGL3	780	789	-	8.31	ccatatttgg
Agamous	780	790	+	7.79	ccaaatatggg
SQUA	780	793	+	7.71	ccaaatatgggcaa
SRF	780	791	-	12.2	gcccatatttgg
IRF2	794	811	+	7.47	caaaactgaaaccagtga
IRF1	795	806	+	10.8	aaaactgaaacc
Pbx	813	824	-	6.49	acatcactcaac
HNF4	823	835	+	6.65	gtgcccaaggtca
RORA	826	835	+	6.69	cccaaggtca
Sox17	834	842	-	6.75	attattgtg
CFI-USP	847	856	-	7.21	gtggtcaccc
RUNX1	851	859	-	9	tttgtggtc
HAND1-TCF3	857	866	-	6.15	cttctggttt
GABPA	859	868	+	6.01	accagaagcc
ELK4	859	867	+	6.12	accagaagc
Snail	873	878	+	8.17	caggtg
deltaEF1	873	878	-	7.09	cacctg

>NM_153449 (1000 bp)

CLUSTER 1
Location: 163 to 720
Score: 5.23
MYB.ph3: 1.74
Foxd3: 1.68
ESR1: 1.05
Chop-cEBP: 0.72
MEF2A: 0.624
FOXI1: 0.528
Agamous: 0.428
Spz1: 0.414
HMG-IY: 0.287
Broad-complex_2: 0.276
TFAP2A: 0.261
AGL3: 0.223
HMG-1: 0.218
REL: 0.215
ARR10: 0.211
Snail: 0.204
ABI4: 0.198
MNB1A: 0.181
Pax4: 0.171
HLF: 0.17
Myb: 0.161
MA0021: 0.152
SP1: 0.148
Staf: 0.14
GATA3: 0.139
Macho-1: 0.137
Dof2: 0.133
PBF: 0.131
Broad-complex_1: 0.127
IRF2: 0.126
Foxa2: 0.125
GATA2: 0.121
En1: 0.111
Broad-complex_4: 0.109
Dorsal_2: 0.108
RUSH1-alfa: 0.107
NF-kappaB: 0.104
ELK1: 0.0979
Prrx2: 0.0979
deltaEF1: 0.0958
Dorsal_1: 0.0923
NR2F1: 0.0905
Fos: 0.0899
c-ETS: 0.089
Gata1: 0.0888
ZNF42_5-13: 0.0874
Hunchback: 0.0852
ZNF42_1-4: 0.0847
Ubx: 0.0823
NR3C1: 0.0779
NHLH1: 0.0778
SQUA: 0.0759
RORA: 0.0702
E2F1: 0.0672
FOXL1: 0.064
MafB: 0.0582
YY1: 0.0577
SPI1: 0.0569
Gfi: 0.0565
ID1: 0.0522
Pax2: 0.0516
CFI-USP: 0.0516
cEBP: 0.0497
FOXC1: 0.0488
Nkx2-5: 0.0484
Athb-1: 0.048
RUNX1: 0.0476
HNF4: 0.0462
RELA: 0.0422
SRY: 0.0414
Broad-complex_3: 0.0403
GAMYB: 0.0403
Klf4: 0.0402
Bapx1: 0.0384
E74A: 0.0381
NFKB1: 0.0376
SOX9: 0.0374
Arnt-Ahr: 0.0369
Myf: 0.0353
Pax5: 0.0333
HAND1-TCF3: 0.0318
Roaz: 0.0304
TCF11-MafG: 0.0302
SPIB: 0.0281
CF2-II: 0.0279
GABPA: 0.0247
TCF1: 0.0227
Sox5: 0.0224
IRF1: 0.022
Evi1: 0.0219
FOXD1: 0.0213
Foxq1: 0.0212
T: 0.0176
TEAD: 0.0164
Arnt: 0.016
Mycn: 0.0157
Sox17: 0.0149
SU_h: 0.0145
ELK4: 0.014
MYC-MAX: 0.013
RORA1: 0.0121
MAX: 0.012
TBP: 0.00844
USF1: 0.00789
RXR-VDR: 0.00602
bZIP910: 0.00586
CREB1: 0.00557
Pbx: 0.00535
FOXF2: 0.00421
PPARG: 0.0034
NFIL3: 0.0034
PPARG-RXRA: 0.00339
Pax6: 0.00315
Ar: 0.00267
ATHB5: 0.00267
NF-Y: 0.00219
RREB1: 0.00217
NR1H2-RXR: 0.00194
TAL1-TCF3: 0.00152
Hox11-CTF1: 0.0015
TP53: 0.000408
SRF: 0.000271
bZIP911: 0.000173
GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT
HMG-1	163	171	-	7.46	gtcgttctc
TFAP2A	171	179	-	7.41	gccccgcgg
NF-kappaB	175	184	+	6.19	ggggcttttc
REL	175	184	+	7.02	ggggcttttc
AGL3	187	196	+	8.18	ccaaaaagag
Agamous	187	197	+	8.71	ccaaaaagagc
Hunchback	187	196	+	6.55	ccaaaaagag
MEF2A	187	196	-	6.2	ctctttttgg
MYB.ph3	212	220	+	7.76	taactgttt
Foxd3	218	229	+	7.26	ttttgtttgttt
FOXI1	218	229	+	7.16	ttttgtttgttt
Foxd3	222	233	+	8.72	gtttgtttgttt
FOXI1	222	233	+	7.67	gtttgtttgttt
Foxd3	226	237	+	8.62	gtttgtttgttt
FOXI1	226	237	+	7.57	gtttgtttgttt
Foxd3	230	241	+	8.46	gtttgtttgttt
FOXI1	230	241	+	7.4	gtttgtttgttt
Foxd3	234	245	+	8.35	gtttgtttgttt
FOXI1	234	245	+	7.3	gtttgtttgttt
Foxd3	238	249	+	8.29	gtttgtttgttt
FOXI1	238	249	+	7.24	gtttgtttgttt
Foxd3	242	253	+	8.38	gtttgtttgttt
FOXI1	242	253	+	7.32	gtttgtttgttt
Foxd3	246	257	+	8.34	gtttgtttgttt
FOXI1	246	257	+	7.29	gtttgtttgttt
ELK1	261	270	+	6.21	gagacggaat
Spz1	276	286	-	8.05	tgggtaacagc
Staf	278	297	+	6.78	tgttacccaggctggagtgc
Chop-cEBP	292	303	+	9.03	gagtgcaatggc
NR2F1	298	311	-	6.06	tgaactccgccatt
ESR1	309	326	+	9.43	tcagctcactgtaacctc
ESR1	310	327	-	6.25	ggaggttacagtgagctg
ZNF42_5-13	324	333	-	6.51	ggaggcggag
Staf	351	370	+	6.6	cctgtctcagcctcccaagc
NHLH1	367	378	-	6.52	tcccaactgctt
Myb	368	375	+	7.24	agcagttg
ABI4	385	394	-	6.95	cggtgcgctc
Agamous	403	413	+	6.45	cctaattttgt
Prrx2	405	409	-	6.97	aatta
Broad-complex_1	407	420	-	7.97	aaaaataacaaaat
HMG-IY	407	422	-	9.33	ctaaaaataacaaaat
Foxd3	408	419	+	7.52	ttttgttatttt
SQUA	409	422	-	7.08	ctaaaaataacaaa
SRY	409	417	-	6.09	aataacaaa
MEF2A	413	422	+	10.1	ttatttttag
SQUA	413	426	+	7.03	ttatttttagtaaa
Hunchback	415	424	-	6.47	tactaaaaat
Broad-complex_4	420	430	+	6.77	tagtaaagact
MNB1A	424	428	+	6.07	aaaga
HLF	432	443	+	7.15	ggtttcgccatg
Macho-1	461	469	-	6	caggggttc
RORA	468	477	-	6.45	cttgaggtca
IRF2	499	516	+	7.64	caaaagtgctaggattac
MA0021	501	506	+	7.2	aaagtg
MNB1A	501	505	+	6.03	aaagt
PBF	501	505	+	6.45	aaagt
Chop-cEBP	509	520	-	6.2	acctgtaatcct
Spz1	509	519	+	6.79	aggattacagg
Snail	516	521	+	7.94	caggtg
deltaEF1	516	521	-	6.86	cacctg
Fos	521	528	+	6.33	gtgagcca
Broad-complex_2	543	550	-	6.37	agttattt
MYB.ph3	546	554	+	6.99	taactcttt
ARR10	556	563	-	7.11	agatcctg
REL	569	578	+	6.12	tgggccttcc
GATA3	616	621	-	6.81	agatag
Pax4	638	667	-	6.64	tatctattttcaaagatacccgagcccctc
NR2F1	649	662	+	6.02	gtatctttgaaaat
Pax4	649	678	+	6.18	gtatctttgaaaatagatacgttcacaccc
Broad-complex_1	651	664	+	7.75	atctttgaaaatag
Dof2	651	656	-	6.16	aaagat
MNB1A	652	656	-	6.06	aaaga
Broad-complex_4	655	665	+	7.02	ttgaaaataga
HMG-IY	655	670	+	7.36	ttgaaaatagatacgt
MEF2A	655	664	-	7.33	ctattttcaa
SQUA	655	668	+	6.95	ttgaaaatagatac
FOXL1	656	663	+	6.26	tgaaaata
ID1	656	667	-	6.79	tatctattttca
Broad-complex_1	658	671	+	6.24	aaaatagatacgtt
Pax4	658	687	+	7.94	aaaatagatacgttcacaccctcctaacgg
NR3C1	658	675	+	6.3	aaaatagatacgttcaca
Broad-complex_2	659	666	-	9.06	atctattt
CF2-II	659	668	-	6.59	gtatctattt
FOXI1	659	670	-	7.5	acgtatctattt
Foxa2	659	670	-	7.88	acgtatctattt
MYB.ph3	659	667	-	7.26	tatctattt
Pax4	659	688	+	6.22	aaatagatacgttcacaccctcctaacggc
FOXL1	660	667	+	6.98	aatagata
ARR10	663	670	+	7.27	agatacgt
Agamous	709	719	+	7.25	ccaaaactgtt
MYB.ph3	712	720	+	9.8	aaactgttt
MYB.ph3	712	720	-	9.28	aaacagttt

>NM_030754 (1000 bp)

CLUSTER 1
Location: 875 to 964
Score: 6.64
MEF2A: 2.81
NF-kappaB: 0.698
ZNF42_5-13: 0.529
RELA: 0.377
REL: 0.106
Dof2: 0.0856
MNB1A: 0.08
PBF: 0.0768
SPIB: 0.0607
SPI1: 0.0482
ZNF42_1-4: 0.0464
AGL3: 0.0437
NFKB1: 0.0342
Klf4: 0.0325
RUSH1-alfa: 0.0313
TCF11-MafG: 0.0223
c-ETS: 0.0211
ID1: 0.0203
TAL1-TCF3: 0.0183
HMG-1: 0.0163
Dorsal_2: 0.0145
Hunchback: 0.0134
Pax5: 0.0125
Dorsal_1: 0.0124
SP1: 0.011
HMG-IY: 0.0105
RUNX1: 0.00979
MA0021: 0.00919
En1: 0.00889
deltaEF1: 0.00865
ELK1: 0.00829
E74A: 0.00817
Gata1: 0.00809
Pax2: 0.00804
Macho-1: 0.00785
GATA2: 0.00757
SU_h: 0.00679
ARR10: 0.00616
GABPA: 0.0059
Spz1: 0.00448
SOX9: 0.00436
Pbx: 0.00428
Staf: 0.00423
bZIP910: 0.00399
Snail: 0.00396
Broad-complex_4: 0.0039
YY1: 0.0037
HNF4: 0.00361
Myf: 0.00345
RORA: 0.0031
NR3C1: 0.00277
Foxa2: 0.00274
FOXL1: 0.00267
TFAP2A: 0.00259
Broad-complex_3: 0.00255
Broad-complex_2: 0.00252
HAND1-TCF3: 0.00247
Agamous: 0.0022
ESR1: 0.00215
ELK4: 0.00205
MafB: 0.00184
NR2F1: 0.00175
Ubx: 0.00174
FOXC1: 0.00149
MAX: 0.00135
GATA3: 0.00134
Broad-complex_1: 0.00125
cEBP: 0.00119
Evi1: 0.0011
Pax4: 0.0011
GAMYB: 0.00107
E2F1: 0.00104
Nkx2-5: 0.00104
Bapx1: 0.00103
Mycn: 0.000864
TBP: 0.000835
SRY: 0.000753
CF2-II: 0.000748
Arnt-Ahr: 0.000716
TEAD: 0.000673
CFI-USP: 0.000658
CREB1: 0.000652
Chop-cEBP: 0.000627
USF1: 0.000621
NHLH1: 0.000603
Arnt: 0.000563
Gfi: 0.000515
RREB1: 0.000506
FOXD1: 0.000458
Pax6: 0.000449
Myb: 0.000421
SQUA: 0.000405
Prrx2: 0.00036
Sox5: 0.000326
Sox17: 0.000292
MYC-MAX: 0.000289
Fos: 0.000288
IRF1: 0.000208
Athb-1: 0.000198
HLF: 0.000189
ABI4: 0.000182
MYB.ph3: 0.000167
IRF2: 0.000103
TCF1: 8.44e-05
FOXF2: 8.2e-05
Foxq1: 5.14e-05
Foxd3: 4.59e-05
Hox11-CTF1: 4.41e-05
RXR-VDR: 4.22e-05
TP53: 3.82e-05
T: 3.72e-05
Ar: 2.24e-05
Roaz: 2.2e-05
SRF: 2.11e-05
FOXI1: 1.88e-05
NF-Y: 1.75e-05
bZIP911: 1.68e-05
NFIL3: 1.33e-05
ATHB5: 5.66e-06
RORA1: 1.44e-06
PPARG: 9.86e-07
PPARG-RXRA: 5.69e-08
NR1H2-RXR: 3.84e-08
GTAGGGGAAAtgacctgcaGGGACTTTCCCCAgggaccacatccAGCTTTtcttccctcccaagagaccagcaaggctcaCTATAAATAG
ZNF42_5-13	875	884	+	8.87	gtaggggaaa
ZNF42_1-4	877	882	+	6.43	agggga
SPIB	877	883	+	6.98	aggggaa
Dorsal_2	894	903	+	6.98	gggactttcc
NF-kappaB	894	903	+	11.3	gggactttcc
NF-kappaB	894	903	-	6.13	ggaaagtccc
REL	894	903	+	9.51	gggactttcc
NFKB1	894	904	+	7.82	gggactttccc
NFKB1	894	904	-	7.61	gggaaagtccc
RELA	894	903	+	10.8	gggactttcc
NF-kappaB	895	904	-	7.38	gggaaagtcc
MA0021	896	901	-	6.52	aaagtc
PBF	897	901	-	6.05	aaagt
ZNF42_1-4	901	906	-	6.21	tgggga
Dof2	919	924	-	6.92	aaagct
MNB1A	920	924	-	6.86	aaagc
PBF	920	924	-	6.82	aaagc
AGL3	955	964	+	9.56	ctataaatag
AGL3	955	964	-	8.73	ctatttatag
MEF2A	955	964	+	9.23	ctataaatag
MEF2A	955	964	-	13	ctatttatag
FOXL1	956	963	+	6.33	tataaata

>NM_016441 (1000 bp)

CLUSTER 1
Location: 757 to 787
Score: 6.98
HMG-IY: 0.482
Pax4: 0.3
Broad-complex_1: 0.171
ID1: 0.0762
ZNF42_5-13: 0.0673
Hunchback: 0.04
Klf4: 0.0239
Broad-complex_3: 0.0168
MYB.ph3: 0.0145
Broad-complex_4: 0.0136
IRF2: 0.00612
PBF: 0.00557
ZNF42_1-4: 0.00546
Foxd3: 0.00523
MNB1A: 0.00507
Dof2: 0.0037
SP1: 0.00368
IRF1: 0.00362
Foxa2: 0.00271
Evi1: 0.00227
Dorsal_1: 0.00211
c-ETS: 0.00198
Macho-1: 0.00168
Broad-complex_2: 0.00167
RUSH1-alfa: 0.00145
SPI1: 0.00129
NR3C1: 0.00102
MA0021: 0.000821
HNF4: 0.000787
YY1: 0.000776
SQUA: 0.000773
E74A: 0.000761
HMG-1: 0.000754
GABPA: 0.000673
Gata1: 0.000612
E2F1: 0.000601
FOXI1: 0.000568
SPIB: 0.000432
SRY: 0.000409
ELK1: 0.000403
Foxq1: 0.000394
FOXD1: 0.000352
SU_h: 0.000351
NR2F1: 0.000304
Nkx2-5: 0.000296
En1: 0.000272
TCF1: 0.000264
GATA3: 0.000248
Spz1: 0.000225
deltaEF1: 0.000205
ABI4: 0.000205
REL: 0.000194
FOXC1: 0.000192
FOXL1: 0.000183
Pax2: 0.000183
FOXF2: 0.00017
GAMYB: 0.000144
Pax5: 0.000141
TBP: 0.000138
Bapx1: 0.000125
Myb: 0.000122
Ubx: 0.000121
TEAD: 0.00012
GATA2: 0.000112
Sox5: 0.000108
SOX9: 0.000106
Athb-1: 0.000104
cEBP: 9.53e-05
Dorsal_2: 9.47e-05
Sox17: 8.91e-05
Staf: 7.69e-05
MafB: 6.14e-05
ARR10: 5.3e-05
Snail: 4.8e-05
Gfi: 2.69e-05
Fos: 2.68e-05
Arnt-Ahr: 2.33e-05
HAND1-TCF3: 2.2e-05
Arnt: 1.67e-05
TCF11-MafG: 1.06e-05
Prrx2: 9.67e-06
CFI-USP: 6.68e-06
RXR-VDR: 6.51e-06
RORA: 6.26e-06
Myf: 5.75e-06
Agamous: 5.68e-06
TFAP2A: 5.3e-06
MAX: 5.13e-06
HLF: 5.05e-06
Pbx: 4.99e-06
RUNX1: 3.53e-06
Chop-cEBP: 3.28e-06
Mycn: 3.24e-06
PPARG-RXRA: 2.46e-06
AGL3: 2.14e-06
Hox11-CTF1: 2.11e-06
NF-kappaB: 2.09e-06
CREB1: 1.9e-06
NFIL3: 1.67e-06
RELA: 1.6e-06
MYC-MAX: 1.45e-06
ELK4: 1.23e-06
USF1: 1.17e-06
Pax6: 9.56e-07
ESR1: 7.98e-07
TAL1-TCF3: 5.74e-07
CF2-II: 5.73e-07
ATHB5: 4.72e-07
MEF2A: 4.62e-07
bZIP910: 3.93e-07
NFKB1: 1.64e-07
NF-Y: 1.12e-07
T: 1.06e-07
PPARG: 6.76e-08
Ar: 6.58e-08
SRF: 4.55e-08
RORA1: 3.71e-08
bZIP911: 3.46e-08
NHLH1: 3.32e-08
RREB1: 1.69e-08
Roaz: 5.13e-09
NR1H2-RXR: 1.66e-09
TP53: 4.82e-10
GAAACTTTTTTCTTTTTTCCCCCTCCCTCCC
Broad-complex_3	757	767	+	8.15	gaaactttttt
Broad-complex_4	757	767	-	6.36	aaaaaagtttc
NR2F1	757	770	+	7.24	gaaacttttttctt
Foxd3	757	768	+	7.1	gaaacttttttc
HMG-IY	757	772	-	6.79	aaaagaaaaaagtttc
Pax4	757	786	+	13.5	gaaacttttttcttttttccccctccctcc
HNF4	757	769	-	8.01	agaaaaaagtttc
Broad-complex_1	758	771	-	9.12	aaagaaaaaagttt
Broad-complex_3	758	768	-	6.53	gaaaaaagttt
Broad-complex_4	758	768	-	7.24	gaaaaaagttt
Foxd3	758	769	+	8.08	aaacttttttct
HMG-IY	758	773	-	7.57	aaaaagaaaaaagttt
IRF2	758	775	-	11.3	gaaaaaagaaaaaagttt
MYB.ph3	758	766	+	10	aaacttttt
MYB.ph3	758	766	-	9.13	aaaaagttt
Pax4	758	787	+	14.4	aaacttttttcttttttccccctccctccc
NR3C1	758	775	-	9.43	gaaaaaagaaaaaagttt
Broad-complex_1	759	772	-	11.4	aaaagaaaaaagtt
Broad-complex_2	759	766	+	7.43	aacttttt
Dof2	759	764	-	7.14	aaagtt
Foxd3	759	770	+	8.91	aacttttttctt
HMG-IY	759	774	-	9.08	aaaaaagaaaaaagtt
Foxa2	759	770	+	9.07	aacttttttctt
Hunchback	759	768	-	6.61	gaaaaaagtt
Broad-complex_1	760	773	-	8.75	aaaaagaaaaaagt
Broad-complex_4	760	770	-	8.48	aagaaaaaagt
Pax5	760	779	-	6.4	gggggaaaaaagaaaaaagt
FOXF2	760	773	-	6.58	aaaaagaaaaaagt
Klf4	760	769	-	6.45	agaaaaaagt
Foxq1	760	770	+	6.31	acttttttctt
Foxd3	760	771	+	7.33	acttttttcttt
FOXI1	760	771	+	7.89	acttttttcttt
HMG-IY	760	775	-	15.2	gaaaaaagaaaaaagt
Foxa2	760	771	+	8.35	acttttttcttt
MNB1A	760	764	-	7.27	aaagt
PBF	760	764	-	7.69	aaagt
ID1	760	771	+	7.23	acttttttcttt
Broad-complex_1	761	774	-	14.2	aaaaaagaaaaaag
Broad-complex_3	761	771	-	6.44	aaagaaaaaag
Broad-complex_4	761	771	-	7.52	aaagaaaaaag
FOXF2	761	774	-	7.14	aaaaaagaaaaaag
Klf4	761	770	-	10.7	aagaaaaaag
Foxd3	761	772	+	7.16	cttttttctttt
HMG-1	761	769	+	6.22	cttttttct
HMG-IY	761	776	-	13.3	ggaaaaaagaaaaaag
Hunchback	761	770	-	9.48	aagaaaaaag
IRF1	761	772	-	7.96	aaaagaaaaaag
SQUA	761	774	-	7	aaaaaagaaaaaag
RUSH1-alfa	761	768	+	6.38	cttttttc
ID1	761	772	+	6.73	cttttttctttt
Broad-complex_1	762	775	-	12.8	gaaaaaagaaaaaa
Broad-complex_3	762	772	-	11.3	aaaagaaaaaa
Broad-complex_4	762	772	-	10.5	aaaagaaaaaa
Evi1	762	775	-	10.4	gaaaaaagaaaaaa
Klf4	762	771	-	9.11	aaagaaaaaa
Foxd3	762	773	+	8.44	ttttttcttttt
HMG-1	762	770	+	6.44	ttttttctt
HMG-IY	762	777	-	13.2	gggaaaaaagaaaaaa
Hunchback	762	771	-	11.3	aaagaaaaaa
IRF1	762	773	-	8.07	aaaaagaaaaaa
SQUA	762	775	-	7.13	gaaaaaagaaaaaa
TBP	762	776	-	7.02	ggaaaaaagaaaaaa
NR3C1	762	779	-	6.54	gggggaaaaaagaaaaaa
ID1	762	773	+	12.7	ttttttcttttt
Broad-complex_1	763	776	-	12.3	ggaaaaaagaaaaa
Broad-complex_3	763	773	-	7.52	aaaaagaaaaa
Broad-complex_4	763	773	-	9.05	aaaaagaaaaa
Klf4	763	772	-	10.1	aaaagaaaaa
Foxd3	763	774	+	8.42	tttttctttttt
HMG-IY	763	778	-	10.2	ggggaaaaaagaaaaa
TCF1	763	776	+	8.18	tttttcttttttcc
Hunchback	763	772	-	8.9	aaaagaaaaa
IRF1	763	774	-	10.7	aaaaaagaaaaa
SQUA	763	776	-	8.15	ggaaaaaagaaaaa
RUSH1-alfa	763	770	+	7.84	tttttctt
ID1	763	774	+	13.5	tttttctttttt
Broad-complex_1	764	777	-	8.16	gggaaaaaagaaaa
Broad-complex_2	764	771	+	6.8	ttttcttt
Broad-complex_3	764	774	-	6.66	aaaaaagaaaa
Broad-complex_4	764	774	-	10.5	aaaaaagaaaa
Dorsal_1	764	775	+	7.08	ttttcttttttc
ELK1	764	773	-	7.15	aaaaagaaaa
Evi1	764	777	-	6.49	gggaaaaaagaaaa
Klf4	764	773	-	9.43	aaaaagaaaa
Foxq1	764	774	+	7.83	ttttctttttt
Foxd3	764	775	+	10	ttttcttttttc
HMG-IY	764	779	-	9.3	gggggaaaaaagaaaa
Hunchback	764	773	-	8.7	aaaaagaaaa
SQUA	764	777	-	8.55	gggaaaaaagaaaa
HNF4	764	776	-	6.02	ggaaaaaagaaaa
ID1	764	775	+	10.3	ttttcttttttc
Broad-complex_1	765	778	-	7.05	ggggaaaaaagaaa
Broad-complex_3	765	775	-	7.84	gaaaaaagaaa
Broad-complex_4	765	775	-	9.72	gaaaaaagaaa
Dorsal_1	765	776	+	7.22	tttcttttttcc
GAMYB	765	774	-	6.08	aaaaaagaaa
Klf4	765	774	-	7.38	aaaaaagaaa
HMG-1	765	773	+	6.99	tttcttttt
HMG-IY	765	780	-	6.71	agggggaaaaaagaaa
Hunchback	765	774	-	8.7	aaaaaagaaa
SRY	765	773	-	7.26	aaaaagaaa
ID1	765	776	+	9.44	tttcttttttcc
Broad-complex_2	766	773	+	8.27	ttcttttt
Dof2	766	771	-	8.07	aaagaa
Dorsal_1	766	777	+	9.59	ttcttttttccc
GAMYB	766	775	-	6.65	gaaaaaagaa
Hunchback	766	775	-	11.6	gaaaaaagaa
SPIB	766	772	-	6.43	aaaagaa
SU_h	766	781	-	7.89	gagggggaaaaaagaa
ID1	766	777	+	6.64	ttcttttttccc
Broad-complex_2	767	774	+	6.18	tctttttt
Dorsal_1	767	778	+	6.32	tcttttttcccc
Hunchback	767	776	-	7.87	ggaaaaaaga
MNB1A	767	771	-	7.39	aaaga
PBF	767	771	-	6.45	aaaga
REL	767	776	+	6.1	tcttttttcc
Klf4	768	777	-	6.07	gggaaaaaag
HMG-1	768	776	+	6.02	cttttttcc
Hunchback	768	777	-	8.6	gggaaaaaag
RUSH1-alfa	768	775	+	6.38	cttttttc
FOXD1	769	776	-	6.06	ggaaaaaa
HMG-IY	769	784	-	6.95	agggagggggaaaaaa
Hunchback	769	778	-	8.85	ggggaaaaaa
ID1	769	780	+	6.19	ttttttccccct
ZNF42_5-13	773	782	-	9.46	ggagggggaa

>NM_016441 (1000 bp)

CLUSTER 1
Location: 757 to 787
Score: 6.98
HMG-IY: 0.482
Pax4: 0.3
Broad-complex_1: 0.171
ID1: 0.0762
ZNF42_5-13: 0.0673
Hunchback: 0.04
Klf4: 0.0239
Broad-complex_3: 0.0168
MYB.ph3: 0.0145
Broad-complex_4: 0.0136
IRF2: 0.00612
PBF: 0.00557
ZNF42_1-4: 0.00546
Foxd3: 0.00523
MNB1A: 0.00507
Dof2: 0.0037
SP1: 0.00368
IRF1: 0.00362
Foxa2: 0.00271
Evi1: 0.00227
Dorsal_1: 0.00211
c-ETS: 0.00198
Macho-1: 0.00168
Broad-complex_2: 0.00167
RUSH1-alfa: 0.00145
SPI1: 0.00129
NR3C1: 0.00102
MA0021: 0.000821
HNF4: 0.000787
YY1: 0.000776
SQUA: 0.000773
E74A: 0.000761
HMG-1: 0.000754
GABPA: 0.000673
Gata1: 0.000612
E2F1: 0.000601
FOXI1: 0.000568
SPIB: 0.000432
SRY: 0.000409
ELK1: 0.000403
Foxq1: 0.000394
FOXD1: 0.000352
SU_h: 0.000351
NR2F1: 0.000304
Nkx2-5: 0.000296
En1: 0.000272
TCF1: 0.000264
GATA3: 0.000248
Spz1: 0.000225
deltaEF1: 0.000205
ABI4: 0.000205
REL: 0.000194
FOXC1: 0.000192
FOXL1: 0.000183
Pax2: 0.000183
FOXF2: 0.00017
GAMYB: 0.000144
Pax5: 0.000141
TBP: 0.000138
Bapx1: 0.000125
Myb: 0.000122
Ubx: 0.000121
TEAD: 0.00012
GATA2: 0.000112
Sox5: 0.000108
SOX9: 0.000106
Athb-1: 0.000104
cEBP: 9.53e-05
Dorsal_2: 9.47e-05
Sox17: 8.91e-05
Staf: 7.69e-05
MafB: 6.14e-05
ARR10: 5.3e-05
Snail: 4.8e-05
Gfi: 2.69e-05
Fos: 2.68e-05
Arnt-Ahr: 2.33e-05
HAND1-TCF3: 2.2e-05
Arnt: 1.67e-05
TCF11-MafG: 1.06e-05
Prrx2: 9.67e-06
CFI-USP: 6.68e-06
RXR-VDR: 6.51e-06
RORA: 6.26e-06
Myf: 5.75e-06
Agamous: 5.68e-06
TFAP2A: 5.3e-06
MAX: 5.13e-06
HLF: 5.05e-06
Pbx: 4.99e-06
RUNX1: 3.53e-06
Chop-cEBP: 3.28e-06
Mycn: 3.24e-06
PPARG-RXRA: 2.46e-06
AGL3: 2.14e-06
Hox11-CTF1: 2.11e-06
NF-kappaB: 2.09e-06
CREB1: 1.9e-06
NFIL3: 1.67e-06
RELA: 1.6e-06
MYC-MAX: 1.45e-06
ELK4: 1.23e-06
USF1: 1.17e-06
Pax6: 9.56e-07
ESR1: 7.98e-07
TAL1-TCF3: 5.74e-07
CF2-II: 5.73e-07
ATHB5: 4.72e-07
MEF2A: 4.62e-07
bZIP910: 3.93e-07
NFKB1: 1.64e-07
NF-Y: 1.12e-07
T: 1.06e-07
PPARG: 6.76e-08
Ar: 6.58e-08
SRF: 4.55e-08
RORA1: 3.71e-08
bZIP911: 3.46e-08
NHLH1: 3.32e-08
RREB1: 1.69e-08
Roaz: 5.13e-09
NR1H2-RXR: 1.66e-09
TP53: 4.82e-10
GAAACTTTTTTCTTTTTTCCCCCTCCCTCCC
Broad-complex_3	757	767	+	8.15	gaaactttttt
Broad-complex_4	757	767	-	6.36	aaaaaagtttc
NR2F1	757	770	+	7.24	gaaacttttttctt
Foxd3	757	768	+	7.1	gaaacttttttc
HMG-IY	757	772	-	6.79	aaaagaaaaaagtttc
Pax4	757	786	+	13.5	gaaacttttttcttttttccccctccctcc
HNF4	757	769	-	8.01	agaaaaaagtttc
Broad-complex_1	758	771	-	9.12	aaagaaaaaagttt
Broad-complex_3	758	768	-	6.53	gaaaaaagttt
Broad-complex_4	758	768	-	7.24	gaaaaaagttt
Foxd3	758	769	+	8.08	aaacttttttct
HMG-IY	758	773	-	7.57	aaaaagaaaaaagttt
IRF2	758	775	-	11.3	gaaaaaagaaaaaagttt
MYB.ph3	758	766	+	10	aaacttttt
MYB.ph3	758	766	-	9.13	aaaaagttt
Pax4	758	787	+	14.4	aaacttttttcttttttccccctccctccc
NR3C1	758	775	-	9.43	gaaaaaagaaaaaagttt
Broad-complex_1	759	772	-	11.4	aaaagaaaaaagtt
Broad-complex_2	759	766	+	7.43	aacttttt
Dof2	759	764	-	7.14	aaagtt
Foxd3	759	770	+	8.91	aacttttttctt
HMG-IY	759	774	-	9.08	aaaaaagaaaaaagtt
Foxa2	759	770	+	9.07	aacttttttctt
Hunchback	759	768	-	6.61	gaaaaaagtt
Broad-complex_1	760	773	-	8.75	aaaaagaaaaaagt
Broad-complex_4	760	770	-	8.48	aagaaaaaagt
Pax5	760	779	-	6.4	gggggaaaaaagaaaaaagt
FOXF2	760	773	-	6.58	aaaaagaaaaaagt
Klf4	760	769	-	6.45	agaaaaaagt
Foxq1	760	770	+	6.31	acttttttctt
Foxd3	760	771	+	7.33	acttttttcttt
FOXI1	760	771	+	7.89	acttttttcttt
HMG-IY	760	775	-	15.2	gaaaaaagaaaaaagt
Foxa2	760	771	+	8.35	acttttttcttt
MNB1A	760	764	-	7.27	aaagt
PBF	760	764	-	7.69	aaagt
ID1	760	771	+	7.23	acttttttcttt
Broad-complex_1	761	774	-	14.2	aaaaaagaaaaaag
Broad-complex_3	761	771	-	6.44	aaagaaaaaag
Broad-complex_4	761	771	-	7.52	aaagaaaaaag
FOXF2	761	774	-	7.14	aaaaaagaaaaaag
Klf4	761	770	-	10.7	aagaaaaaag
Foxd3	761	772	+	7.16	cttttttctttt
HMG-1	761	769	+	6.22	cttttttct
HMG-IY	761	776	-	13.3	ggaaaaaagaaaaaag
Hunchback	761	770	-	9.48	aagaaaaaag
IRF1	761	772	-	7.96	aaaagaaaaaag
SQUA	761	774	-	7	aaaaaagaaaaaag
RUSH1-alfa	761	768	+	6.38	cttttttc
ID1	761	772	+	6.73	cttttttctttt
Broad-complex_1	762	775	-	12.8	gaaaaaagaaaaaa
Broad-complex_3	762	772	-	11.3	aaaagaaaaaa
Broad-complex_4	762	772	-	10.5	aaaagaaaaaa
Evi1	762	775	-	10.4	gaaaaaagaaaaaa
Klf4	762	771	-	9.11	aaagaaaaaa
Foxd3	762	773	+	8.44	ttttttcttttt
HMG-1	762	770	+	6.44	ttttttctt
HMG-IY	762	777	-	13.2	gggaaaaaagaaaaaa
Hunchback	762	771	-	11.3	aaagaaaaaa
IRF1	762	773	-	8.07	aaaaagaaaaaa
SQUA	762	775	-	7.13	gaaaaaagaaaaaa
TBP	762	776	-	7.02	ggaaaaaagaaaaaa
NR3C1	762	779	-	6.54	gggggaaaaaagaaaaaa
ID1	762	773	+	12.7	ttttttcttttt
Broad-complex_1	763	776	-	12.3	ggaaaaaagaaaaa
Broad-complex_3	763	773	-	7.52	aaaaagaaaaa
Broad-complex_4	763	773	-	9.05	aaaaagaaaaa
Klf4	763	772	-	10.1	aaaagaaaaa
Foxd3	763	774	+	8.42	tttttctttttt
HMG-IY	763	778	-	10.2	ggggaaaaaagaaaaa
TCF1	763	776	+	8.18	tttttcttttttcc
Hunchback	763	772	-	8.9	aaaagaaaaa
IRF1	763	774	-	10.7	aaaaaagaaaaa
SQUA	763	776	-	8.15	ggaaaaaagaaaaa
RUSH1-alfa	763	770	+	7.84	tttttctt
ID1	763	774	+	13.5	tttttctttttt
Broad-complex_1	764	777	-	8.16	gggaaaaaagaaaa
Broad-complex_2	764	771	+	6.8	ttttcttt
Broad-complex_3	764	774	-	6.66	aaaaaagaaaa
Broad-complex_4	764	774	-	10.5	aaaaaagaaaa
Dorsal_1	764	775	+	7.08	ttttcttttttc
ELK1	764	773	-	7.15	aaaaagaaaa
Evi1	764	777	-	6.49	gggaaaaaagaaaa
Klf4	764	773	-	9.43	aaaaagaaaa
Foxq1	764	774	+	7.83	ttttctttttt
Foxd3	764	775	+	10	ttttcttttttc
HMG-IY	764	779	-	9.3	gggggaaaaaagaaaa
Hunchback	764	773	-	8.7	aaaaagaaaa
SQUA	764	777	-	8.55	gggaaaaaagaaaa
HNF4	764	776	-	6.02	ggaaaaaagaaaa
ID1	764	775	+	10.3	ttttcttttttc
Broad-complex_1	765	778	-	7.05	ggggaaaaaagaaa
Broad-complex_3	765	775	-	7.84	gaaaaaagaaa
Broad-complex_4	765	775	-	9.72	gaaaaaagaaa
Dorsal_1	765	776	+	7.22	tttcttttttcc
GAMYB	765	774	-	6.08	aaaaaagaaa
Klf4	765	774	-	7.38	aaaaaagaaa
HMG-1	765	773	+	6.99	tttcttttt
HMG-IY	765	780	-	6.71	agggggaaaaaagaaa
Hunchback	765	774	-	8.7	aaaaaagaaa
SRY	765	773	-	7.26	aaaaagaaa
ID1	765	776	+	9.44	tttcttttttcc
Broad-complex_2	766	773	+	8.27	ttcttttt
Dof2	766	771	-	8.07	aaagaa
Dorsal_1	766	777	+	9.59	ttcttttttccc
GAMYB	766	775	-	6.65	gaaaaaagaa
Hunchback	766	775	-	11.6	gaaaaaagaa
SPIB	766	772	-	6.43	aaaagaa
SU_h	766	781	-	7.89	gagggggaaaaaagaa
ID1	766	777	+	6.64	ttcttttttccc
Broad-complex_2	767	774	+	6.18	tctttttt
Dorsal_1	767	778	+	6.32	tcttttttcccc
Hunchback	767	776	-	7.87	ggaaaaaaga
MNB1A	767	771	-	7.39	aaaga
PBF	767	771	-	6.45	aaaga
REL	767	776	+	6.1	tcttttttcc
Klf4	768	777	-	6.07	gggaaaaaag
HMG-1	768	776	+	6.02	cttttttcc
Hunchback	768	777	-	8.6	gggaaaaaag
RUSH1-alfa	768	775	+	6.38	cttttttc
FOXD1	769	776	-	6.06	ggaaaaaa
HMG-IY	769	784	-	6.95	agggagggggaaaaaa
Hunchback	769	778	-	8.85	ggggaaaaaa
ID1	769	780	+	6.19	ttttttccccct
ZNF42_5-13	773	782	-	9.46	ggagggggaa

>NM_001307 (1000 bp)

CLUSTER 1
Location: 847 to 978
Score: 6.31
CF2-II: 2.32
ELK4: 1.3
Snail: 0.66
bZIP910: 0.643
CREB1: 0.29
deltaEF1: 0.201
GABPA: 0.155
TCF11-MafG: 0.0943
FOXL1: 0.055
Mycn: 0.0306
ELK1: 0.0297
ZNF42_5-13: 0.0273
c-ETS: 0.0245
USF1: 0.0213
ZNF42_1-4: 0.0205
Bapx1: 0.0197
Arnt: 0.0172
E74A: 0.0168
MafB: 0.0109
HLF: 0.0102
FOXC1: 0.0101
MAX: 0.0101
TBP: 0.00896
GATA2: 0.00783
SPIB: 0.00756
Pax2: 0.00719
YY1: 0.00694
ABI4: 0.00671
Gata1: 0.00671
ESR1: 0.00662
SPI1: 0.00651
TFAP2A: 0.00617
RELA: 0.00609
SP1: 0.00609
En1: 0.00582
Macho-1: 0.00556
Arnt-Ahr: 0.00556
NR2F1: 0.0052
Fos: 0.00488
RUSH1-alfa: 0.00455
ARR10: 0.0044
GATA3: 0.00397
SQUA: 0.00392
NFIL3: 0.0038
NFKB1: 0.00326
Ubx: 0.00307
Nkx2-5: 0.00267
HNF4: 0.00249
REL: 0.00207
AGL3: 0.00188
HMG-1: 0.00154
GAMYB: 0.00153
Klf4: 0.00139
NF-kappaB: 0.00128
Dorsal_2: 0.0012
IRF1: 0.00105
ID1: 0.00101
RORA1: 0.000991
CFI-USP: 0.000914
Sox5: 0.000865
Dorsal_1: 0.000849
bZIP911: 0.000797
Gfi: 0.000754
Broad-complex_3: 0.000744
MEF2A: 0.000742
Spz1: 0.00072
RORA: 0.000687
RUNX1: 0.000652
HMG-IY: 0.000648
Sox17: 0.000565
MA0021: 0.000564
Pax5: 0.000563
NR3C1: 0.000525
PBF: 0.000522
Broad-complex_4: 0.00051
Broad-complex_2: 0.000486
FOXI1: 0.000486
Broad-complex_1: 0.000475
NHLH1: 0.000412
E2F1: 0.000395
Agamous: 0.000392
MNB1A: 0.000372
Foxa2: 0.000359
Dof2: 0.000287
Pax6: 0.000281
TEAD: 0.000264
SOX9: 0.000249
HAND1-TCF3: 0.000233
cEBP: 0.000225
TAL1-TCF3: 0.000222
PPARG: 0.000215
Myb: 0.000163
FOXD1: 0.000151
MYB.ph3: 0.000138
SRY: 0.000135
TP53: 9.61e-05
Prrx2: 9.57e-05
Chop-cEBP: 8.79e-05
Staf: 7.95e-05
MYC-MAX: 7.69e-05
Hox11-CTF1: 6.51e-05
FOXF2: 6.11e-05
Myf: 5.24e-05
Roaz: 5.11e-05
Ar: 4.95e-05
SU_h: 4.79e-05
Hunchback: 4.15e-05
Foxq1: 3.48e-05
Pax4: 3.33e-05
RXR-VDR: 2.33e-05
Foxd3: 2.3e-05
RREB1: 1.94e-05
Pbx: 1.52e-05
IRF2: 1.33e-05
Athb-1: 1.25e-05
TCF1: 1.14e-05
NF-Y: 1.04e-05
SRF: 2.77e-06
T: 2e-06
ATHB5: 1.41e-06
Evi1: 1.33e-06
PPARG-RXRA: 1.47e-07
NR1H2-RXR: 3.97e-09
GACTTCCGGTTCAGGTGagtgtcccTTCGGTGACGTCAGGTCATCctcggccgcccctccggtcccgcctccccctcccgcgctcccggggcgcgcgggccgcgcccccgACGCCCTACATATACTCAGGTG
GABPA	847	856	-	9.24	accggaagtc
ELK4	848	856	-	11	accggaagt
E74A	849	855	-	6.97	ccggaag
ELK1	849	858	-	7.93	gaaccggaag
SPIB	850	856	-	6.34	accggaa
Snail	858	863	+	7.82	caggtg
deltaEF1	858	863	-	6.74	cacctg
CREB1	872	883	+	8.79	ttcggtgacgtc
bZIP910	876	882	+	7.87	gtgacgt
bZIP910	879	885	-	9.37	ctgacgt
TCF11-MafG	886	891	-	6.69	gatgac
RORA1	957	970	-	6.31	tatatgtagggcgt
TBP	957	971	-	7.98	gtatatgtagggcgt
NFIL3	959	969	-	6.02	atatgtagggc
AGL3	962	971	+	6.71	ctacatatac
CF2-II	962	971	+	10.9	ctacatatac
CF2-II	962	971	-	13.2	gtatatgtag
FOXI1	962	973	-	6.1	gagtatatgtag
SQUA	962	975	+	8.52	ctacatatactcag
TBP	962	976	+	8.43	ctacatatactcagg
FOXC1	963	970	-	8.64	tatatgta
FOXL1	963	970	+	10.3	tacatata
FOXL1	963	970	-	8.99	tatatgta
Broad-complex_1	965	978	+	6.26	catatactcaggtg
RUSH1-alfa	965	972	-	6.94	agtatatg
ARR10	966	973	+	6.35	atatactc
FOXL1	967	974	-	6.59	tgagtata
Bapx1	967	975	-	7.69	ctgagtata
Fos	968	975	-	6.51	ctgagtat
FOXC1	969	976	-	6.66	cctgagta
Snail	973	978	+	8.64	caggtg
deltaEF1	973	978	-	7.57	cacctg

>NM_002037 (1000 bp)

CLUSTER 1
Location: 7 to 659
Score: 6.23
Myf: 2.71
RREB1: 2.22
Chop-cEBP: 1.28
SQUA: 0.704
Athb-1: 0.547
Gfi: 0.456
ZNF42_1-4: 0.437
Hunchback: 0.378
Snail: 0.362
SPIB: 0.354
Klf4: 0.349
SU_h: 0.293
NF-Y: 0.28
Foxd3: 0.265
E74A: 0.264
Evi1: 0.236
c-ETS: 0.23
ZNF42_5-13: 0.208
ELK1: 0.203
FOXI1: 0.201
SPI1: 0.198
ID1: 0.197
NR3C1: 0.195
Broad-complex_4: 0.192
HMG-IY: 0.19
SP1: 0.19
Dof2: 0.188
MNB1A: 0.184
Sox5: 0.172
PBF: 0.158
Broad-complex_3: 0.154
GATA3: 0.151
HNF4: 0.146
Macho-1: 0.143
MA0021: 0.139
Pax4: 0.136
Broad-complex_2: 0.134
deltaEF1: 0.131
HMG-1: 0.119
RELA: 0.119
RUSH1-alfa: 0.115
SOX9: 0.114
Broad-complex_1: 0.113
Nkx2-5: 0.107
Staf: 0.106
TCF11-MafG: 0.103
IRF1: 0.0941
En1: 0.094
YY1: 0.0924
GATA2: 0.092
Gata1: 0.0912
Pax2: 0.0902
Bapx1: 0.0878
Pax5: 0.0843
HAND1-TCF3: 0.0811
Arnt: 0.0783
SRY: 0.0771
Ubx: 0.0756
Prrx2: 0.0742
FOXC1: 0.0733
TBP: 0.0687
Spz1: 0.068
GAMYB: 0.067
Sox17: 0.0668
MafB: 0.0665
Myb: 0.0657
ELK4: 0.0654
REL: 0.0643
FOXL1: 0.0624
Dorsal_1: 0.0606
ABI4: 0.0589
Pbx: 0.0572
Agamous: 0.0561
GABPA: 0.0552
E2F1: 0.0512
ARR10: 0.05
MYB.ph3: 0.0481
Foxa2: 0.0445
RUNX1: 0.0417
ATHB5: 0.0398
TFAP2A: 0.0383
cEBP: 0.034
NR2F1: 0.0315
TEAD: 0.0302
CFI-USP: 0.0284
Dorsal_2: 0.0283
Fos: 0.0272
Mycn: 0.026
FOXD1: 0.0257
AGL3: 0.0243
NFKB1: 0.0229
HLF: 0.0209
Arnt-Ahr: 0.0199
NHLH1: 0.0192
FOXF2: 0.0166
Hox11-CTF1: 0.0141
MYC-MAX: 0.0136
Foxq1: 0.0135
USF1: 0.0134
T: 0.013
MAX: 0.0122
NF-kappaB: 0.0101
NFIL3: 0.00999
Ar: 0.0094
RORA: 0.00933
IRF2: 0.00924
TCF1: 0.0086
Pax6: 0.00688
MEF2A: 0.00498
CREB1: 0.00484
ESR1: 0.0047
CF2-II: 0.00455
TAL1-TCF3: 0.003
bZIP910: 0.00287
TP53: 0.00158
RORA1: 0.00154
RXR-VDR: 0.00146
PPARG: 0.000674
PPARG-RXRA: 0.00062
SRF: 0.000517
bZIP911: 0.000321
Roaz: 0.000116
NR1H2-RXR: 3.77e-05
TCAGGAAGccaaagtGTTTCTTTTTATGAAGTTACATCCTGCCATAGaaaagctggataggaaataaagacCGATGCACTCCCAACTGTATACTAAACCggCAATTATTTcatcaagggaaatatgagcaaaagCTCAGATTCAgtgaaggggaaaaaaacatgagaagtttgaatgTTATGAGAAACCAAAGACAACCAATGACTACAATTAAacgaGGTTTTTTGGGGGTGGGGCGGGGAATGTAcgaaCAAATCTCTGtcaTTTCAGGTTCcttagTCGCCGCTTGGCCCCTCCCCCTATttcagtaatacttcctccagacttttgcTAGAAAAAAAATATAAATGAGTGTCCGCAGAAATAGGGGACTGAtaaaatgatcctaatctccttctcctcCTCATTGTTATTTGTTGtgcgtttcCACGTTTCAGGACAGGATTCTACTttgctccgtactcttttcagtttgatcaaagaaaacgctgctaTCACCGCCCAattttccatttcatcctctcaccctcAAATGAAAAGacaccagaAAGGCAAGATAGCCctgtctcgAGGCAGTTTCCCATGGTTTTGGGGGAATGGCAGGTGccaatCTGCAGCAGCAGCTGCAACCTTCCGCAAAGCGGAAACTGCAG
SPIB	7	13	+	6.06	tcaggaa
E74A	8	14	+	7.05	caggaag
HMG-IY	22	37	-	6.14	cttcataaaaagaaac
SQUA	22	35	-	9.43	tcataaaaagaaac
Hunchback	26	35	-	6.82	tcataaaaag
Staf	34	53	+	6.25	gaagttacatcctgccatag
Chop-cEBP	78	89	+	10.2	cgatgcactccc
Bapx1	81	89	-	7.25	gggagtgca
Myb	89	96	-	6.3	tacagttg
Broad-complex_3	95	105	+	6.29	tatactaaacc
Athb-1	108	115	+	8.89	caattatt
Nkx2-5	108	114	-	6.04	ataattg
ATHB5	108	116	+	6.06	caattattt
Gfi	141	150	-	6.37	tgaatctgag
SU_h	184	199	+	6.08	ttatgagaaaccaaag
NF-Y	199	214	+	7.75	gacaaccaatgactac
Nkx2-5	214	220	-	6.34	ttaattg
RREB1	225	244	-	7.6	cgccccacccccaaaaaacc
Hunchback	226	235	-	6.53	cccaaaaaac
Hunchback	227	236	-	7.64	ccccaaaaaa
RREB1	228	247	-	12.1	ccccgccccacccccaaaaa
Macho-1	231	239	+	6.35	ttgggggtg
SP1	239	248	+	8.64	ggggcgggga
TEAD	242	253	-	7.18	tacattccccgc
ZNF42_1-4	243	248	+	6.71	cgggga
Gfi	258	267	+	8.14	caaatctctg
ELK1	271	280	-	6.89	gaacctgaaa
NF-Y	286	301	-	6.33	aggggccaagcggcga
HNF4	287	299	-	6.46	gggccaagcggcg
HNF4	294	306	-	6.6	gggggaggggcca
Klf4	298	307	-	6.6	agggggaggg
Klf4	299	308	-	6.36	tagggggagg
ZNF42_5-13	300	309	-	6.92	atagggggag
ZNF42_1-4	301	306	-	6.61	ggggga
Broad-complex_4	338	348	+	7.48	tagaaaaaaaa
Hunchback	338	347	+	6.77	tagaaaaaaa
Hunchback	339	348	+	6.2	agaaaaaaaa
Hunchback	340	349	+	7.7	gaaaaaaaat
Foxd3	342	353	-	8.1	ttatattttttt
TBP	348	362	+	6.52	atataaatgagtgtc
Staf	362	381	-	6.28	tcagtcccctatttctgcgg
Broad-complex_2	368	375	-	6.34	ccctattt
ZNF42_1-4	372	377	+	7.59	agggga
Sox17	409	417	+	6.38	ctcattgtt
Sox5	412	418	-	7.27	taacaat
FOXI1	414	425	+	7.52	tgttatttgttg
Arnt	434	439	-	6.33	aacgtg
NR3C1	440	457	-	7.28	agtagaatcctgtcctga
SP1	501	510	-	6.21	tgggcggtga
Klf4	537	546	+	6.38	aaatgaaaag
Evi1	555	568	+	7.64	aaggcaagatagcc
GATA3	561	566	+	6.34	agatag
SU_h	577	592	-	7.96	ccatgggaaactgcct
RELA	578	587	+	6.95	ggcagtttcc
SOX9	587	595	-	6.85	aaaccatgg
Pax5	590	609	+	7.2	tggttttgggggaatggcag
ZNF42_5-13	594	603	+	6.38	tttgggggaa
Macho-1	595	603	+	6.32	ttgggggaa
Klf4	596	605	+	6.02	tgggggaatg
ZNF42_1-4	596	601	+	6.05	tggggg
ZNF42_1-4	597	602	+	7.41	ggggga
Snail	607	612	+	8.56	caggtg
deltaEF1	607	612	-	7.49	cacctg
Myf	618	629	+	7.7	ctgcagcagcag
NHLH1	621	632	+	6.16	cagcagcagctg
Myf	621	632	+	11.5	cagcagcagctg
Myf	621	632	-	8.22	cagctgctgctg
NHLH1	624	635	+	6.66	cagcagctgcaa
Myf	624	635	+	7.29	cagcagctgcaa
Spz1	629	639	-	6.18	aaggttgcagc
SPI1	637	642	-	6.28	cggaag
SPIB	638	644	-	6.57	tgcggaa
ID1	641	652	-	6.09	ttccgctttgcg
MA0021	644	649	+	6.58	aaagcg
ELK1	644	653	+	6.01	aaagcggaaa
SPIB	646	652	+	7.82	agcggaa
E74A	647	653	+	6.29	gcggaaa
Myf	648	659	+	7.81	cggaaactgcag
c-ETS	648	653	-	6.02	tttccg

>NM_153449 (1000 bp)

CLUSTER 1
Location: 163 to 720
Score: 5.23
MYB.ph3: 1.74
Foxd3: 1.68
ESR1: 1.05
Chop-cEBP: 0.72
MEF2A: 0.624
FOXI1: 0.528
Agamous: 0.428
Spz1: 0.414
HMG-IY: 0.287
Broad-complex_2: 0.276
TFAP2A: 0.261
AGL3: 0.223
HMG-1: 0.218
REL: 0.215
ARR10: 0.211
Snail: 0.204
ABI4: 0.198
MNB1A: 0.181
Pax4: 0.171
HLF: 0.17
Myb: 0.161
MA0021: 0.152
SP1: 0.148
Staf: 0.14
GATA3: 0.139
Macho-1: 0.137
Dof2: 0.133
PBF: 0.131
Broad-complex_1: 0.127
IRF2: 0.126
Foxa2: 0.125
GATA2: 0.121
En1: 0.111
Broad-complex_4: 0.109
Dorsal_2: 0.108
RUSH1-alfa: 0.107
NF-kappaB: 0.104
ELK1: 0.0979
Prrx2: 0.0979
deltaEF1: 0.0958
Dorsal_1: 0.0923
NR2F1: 0.0905
Fos: 0.0899
c-ETS: 0.089
Gata1: 0.0888
ZNF42_5-13: 0.0874
Hunchback: 0.0852
ZNF42_1-4: 0.0847
Ubx: 0.0823
NR3C1: 0.0779
NHLH1: 0.0778
SQUA: 0.0759
RORA: 0.0702
E2F1: 0.0672
FOXL1: 0.064
MafB: 0.0582
YY1: 0.0577
SPI1: 0.0569
Gfi: 0.0565
ID1: 0.0522
Pax2: 0.0516
CFI-USP: 0.0516
cEBP: 0.0497
FOXC1: 0.0488
Nkx2-5: 0.0484
Athb-1: 0.048
RUNX1: 0.0476
HNF4: 0.0462
RELA: 0.0422
SRY: 0.0414
Broad-complex_3: 0.0403
GAMYB: 0.0403
Klf4: 0.0402
Bapx1: 0.0384
E74A: 0.0381
NFKB1: 0.0376
SOX9: 0.0374
Arnt-Ahr: 0.0369
Myf: 0.0353
Pax5: 0.0333
HAND1-TCF3: 0.0318
Roaz: 0.0304
TCF11-MafG: 0.0302
SPIB: 0.0281
CF2-II: 0.0279
GABPA: 0.0247
TCF1: 0.0227
Sox5: 0.0224
IRF1: 0.022
Evi1: 0.0219
FOXD1: 0.0213
Foxq1: 0.0212
T: 0.0176
TEAD: 0.0164
Arnt: 0.016
Mycn: 0.0157
Sox17: 0.0149
SU_h: 0.0145
ELK4: 0.014
MYC-MAX: 0.013
RORA1: 0.0121
MAX: 0.012
TBP: 0.00844
USF1: 0.00789
RXR-VDR: 0.00602
bZIP910: 0.00586
CREB1: 0.00557
Pbx: 0.00535
FOXF2: 0.00421
PPARG: 0.0034
NFIL3: 0.0034
PPARG-RXRA: 0.00339
Pax6: 0.00315
Ar: 0.00267
ATHB5: 0.00267
NF-Y: 0.00219
RREB1: 0.00217
NR1H2-RXR: 0.00194
TAL1-TCF3: 0.00152
Hox11-CTF1: 0.0015
TP53: 0.000408
SRF: 0.000271
bZIP911: 0.000173
GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT
HMG-1	163	171	-	7.46	gtcgttctc
TFAP2A	171	179	-	7.41	gccccgcgg
NF-kappaB	175	184	+	6.19	ggggcttttc
REL	175	184	+	7.02	ggggcttttc
AGL3	187	196	+	8.18	ccaaaaagag
Agamous	187	197	+	8.71	ccaaaaagagc
Hunchback	187	196	+	6.55	ccaaaaagag
MEF2A	187	196	-	6.2	ctctttttgg
MYB.ph3	212	220	+	7.76	taactgttt
Foxd3	218	229	+	7.26	ttttgtttgttt
FOXI1	218	229	+	7.16	ttttgtttgttt
Foxd3	222	233	+	8.72	gtttgtttgttt
FOXI1	222	233	+	7.67	gtttgtttgttt
Foxd3	226	237	+	8.62	gtttgtttgttt
FOXI1	226	237	+	7.57	gtttgtttgttt
Foxd3	230	241	+	8.46	gtttgtttgttt
FOXI1	230	241	+	7.4	gtttgtttgttt
Foxd3	234	245	+	8.35	gtttgtttgttt
FOXI1	234	245	+	7.3	gtttgtttgttt
Foxd3	238	249	+	8.29	gtttgtttgttt
FOXI1	238	249	+	7.24	gtttgtttgttt
Foxd3	242	253	+	8.38	gtttgtttgttt
FOXI1	242	253	+	7.32	gtttgtttgttt
Foxd3	246	257	+	8.34	gtttgtttgttt
FOXI1	246	257	+	7.29	gtttgtttgttt
ELK1	261	270	+	6.21	gagacggaat
Spz1	276	286	-	8.05	tgggtaacagc
Staf	278	297	+	6.78	tgttacccaggctggagtgc
Chop-cEBP	292	303	+	9.03	gagtgcaatggc
NR2F1	298	311	-	6.06	tgaactccgccatt
ESR1	309	326	+	9.43	tcagctcactgtaacctc
ESR1	310	327	-	6.25	ggaggttacagtgagctg
ZNF42_5-13	324	333	-	6.51	ggaggcggag
Staf	351	370	+	6.6	cctgtctcagcctcccaagc
NHLH1	367	378	-	6.52	tcccaactgctt
Myb	368	375	+	7.24	agcagttg
ABI4	385	394	-	6.95	cggtgcgctc
Agamous	403	413	+	6.45	cctaattttgt
Prrx2	405	409	-	6.97	aatta
Broad-complex_1	407	420	-	7.97	aaaaataacaaaat
HMG-IY	407	422	-	9.33	ctaaaaataacaaaat
Foxd3	408	419	+	7.52	ttttgttatttt
SQUA	409	422	-	7.08	ctaaaaataacaaa
SRY	409	417	-	6.09	aataacaaa
MEF2A	413	422	+	10.1	ttatttttag
SQUA	413	426	+	7.03	ttatttttagtaaa
Hunchback	415	424	-	6.47	tactaaaaat
Broad-complex_4	420	430	+	6.77	tagtaaagact
MNB1A	424	428	+	6.07	aaaga
HLF	432	443	+	7.15	ggtttcgccatg
Macho-1	461	469	-	6	caggggttc
RORA	468	477	-	6.45	cttgaggtca
IRF2	499	516	+	7.64	caaaagtgctaggattac
MA0021	501	506	+	7.2	aaagtg
MNB1A	501	505	+	6.03	aaagt
PBF	501	505	+	6.45	aaagt
Chop-cEBP	509	520	-	6.2	acctgtaatcct
Spz1	509	519	+	6.79	aggattacagg
Snail	516	521	+	7.94	caggtg
deltaEF1	516	521	-	6.86	cacctg
Fos	521	528	+	6.33	gtgagcca
Broad-complex_2	543	550	-	6.37	agttattt
MYB.ph3	546	554	+	6.99	taactcttt
ARR10	556	563	-	7.11	agatcctg
REL	569	578	+	6.12	tgggccttcc
GATA3	616	621	-	6.81	agatag
Pax4	638	667	-	6.64	tatctattttcaaagatacccgagcccctc
NR2F1	649	662	+	6.02	gtatctttgaaaat
Pax4	649	678	+	6.18	gtatctttgaaaatagatacgttcacaccc
Broad-complex_1	651	664	+	7.75	atctttgaaaatag
Dof2	651	656	-	6.16	aaagat
MNB1A	652	656	-	6.06	aaaga
Broad-complex_4	655	665	+	7.02	ttgaaaataga
HMG-IY	655	670	+	7.36	ttgaaaatagatacgt
MEF2A	655	664	-	7.33	ctattttcaa
SQUA	655	668	+	6.95	ttgaaaatagatac
FOXL1	656	663	+	6.26	tgaaaata
ID1	656	667	-	6.79	tatctattttca
Broad-complex_1	658	671	+	6.24	aaaatagatacgtt
Pax4	658	687	+	7.94	aaaatagatacgttcacaccctcctaacgg
NR3C1	658	675	+	6.3	aaaatagatacgttcaca
Broad-complex_2	659	666	-	9.06	atctattt
CF2-II	659	668	-	6.59	gtatctattt
FOXI1	659	670	-	7.5	acgtatctattt
Foxa2	659	670	-	7.88	acgtatctattt
MYB.ph3	659	667	-	7.26	tatctattt
Pax4	659	688	+	6.22	aaatagatacgttcacaccctcctaacggc
FOXL1	660	667	+	6.98	aatagata
ARR10	663	670	+	7.27	agatacgt
Agamous	709	719	+	7.25	ccaaaactgtt
MYB.ph3	712	720	+	9.8	aaactgttt
MYB.ph3	712	720	-	9.28	aaacagttt

>NM_018952 (1000 bp)

CLUSTER 1
Location: 514 to 936
Score: 5.84
IRF1: 2.06
NF-Y: 1.26
Myf: 0.517
RREB1: 0.425
HMG-IY: 0.416
Klf4: 0.377
HNF4: 0.316
Gfi: 0.31
Dorsal_1: 0.279
NFKB1: 0.263
Pax4: 0.234
Snail: 0.221
NF-kappaB: 0.184
ABI4: 0.181
ZNF42_1-4: 0.181
E74A: 0.173
Agamous: 0.172
RELA: 0.164
ELK1: 0.155
Macho-1: 0.154
Dorsal_2: 0.145
ZNF42_5-13: 0.138
c-ETS: 0.132
YY1: 0.132
SPI1: 0.124
MAX: 0.12
REL: 0.114
ID1: 0.11
SP1: 0.106
MNB1A: 0.105
PBF: 0.103
Dof2: 0.097
Foxd3: 0.0929
Sox17: 0.0914
HMG-1: 0.0911
RUSH1-alfa: 0.091
AGL3: 0.0901
deltaEF1: 0.0896
Broad-complex_4: 0.088
ARR10: 0.086
Broad-complex_3: 0.0855
En1: 0.0829
NR2F1: 0.0752
cEBP: 0.0672
Hunchback: 0.0664
TCF11-MafG: 0.0645
GATA3: 0.0634
MA0021: 0.0629
MYB.ph3: 0.0589
SRY: 0.0584
SPIB: 0.0566
Spz1: 0.0553
CFI-USP: 0.0489
USF1: 0.0484
Gata1: 0.0462
FOXL1: 0.0447
Broad-complex_2: 0.0443
Sox5: 0.0413
Bapx1: 0.0408
Foxa2: 0.0406
NHLH1: 0.0404
Fos: 0.0389
Mycn: 0.0365
GABPA: 0.0359
MafB: 0.0356
E2F1: 0.0344
bZIP911: 0.0341
MYC-MAX: 0.0336
GATA2: 0.0332
Broad-complex_1: 0.0327
NR3C1: 0.0321
Pax5: 0.0314
Pax2: 0.0313
Myb: 0.0312
RUNX1: 0.0309
Foxq1: 0.0288
Nkx2-5: 0.0282
GAMYB: 0.0272
Staf: 0.0269
Ubx: 0.026
Chop-cEBP: 0.0249
FOXC1: 0.0234
TFAP2A: 0.0232
CREB1: 0.0211
SQUA: 0.021
TEAD: 0.0191
TAL1-TCF3: 0.0188
HAND1-TCF3: 0.0166
Arnt: 0.013
TBP: 0.0119
SOX9: 0.0116
SU_h: 0.0112
TCF1: 0.0103
Pbx: 0.00976
FOXI1: 0.00933
ELK4: 0.00849
RORA: 0.00828
HLF: 0.00785
Evi1: 0.00778
Athb-1: 0.00773
FOXD1: 0.00683
Arnt-Ahr: 0.00618
Prrx2: 0.00577
IRF2: 0.00495
ATHB5: 0.00457
Pax6: 0.00376
PPARG-RXRA: 0.0033
MEF2A: 0.00289
ESR1: 0.00256
T: 0.00221
NFIL3: 0.00215
Ar: 0.00214
FOXF2: 0.00203
RXR-VDR: 0.0016
CF2-II: 0.00146
RORA1: 0.00131
Roaz: 0.000978
Hox11-CTF1: 0.000524
bZIP910: 0.000465
SRF: 0.000399
PPARG: 0.000183
TP53: 8.96e-05
NR1H2-RXR: 2.95e-05
GCTTTCATTTTGCCCTtatgCAGGTGgcaactctagacaccgTTTCCTGCTCCTGCCTCACCCCAAAATTGTCTCAgaacagtccctatgcagaggatttggggtagacctttacTAGAAGAGGGagcagagctcctGTGGAGAGTGGGGAGGTTCGGAAAAGAACCCCCTTCCCagctgtaccGTTATGGCTTTTGCACTCTGATTTCCTGCCCCCCCAAATCTCACCCCTTCTCAGATTGGGGTTTCCCCAAAAAGAGAGAAGGagaagaaaagaaGATGGCgactgagaaaagggttgctggtggagcagccatGAAGAAATGCAATAAAttCCTTGTTGTTTTatgaaaatttacaactttgtgatagaagtttatgagtggttgaatCCAGCGATTGGCCGGCGCCGGTCATGTGGCC
IRF1	514	525	-	11	caaaatgaaagc
MNB1A	514	518	-	6.17	aaagc
PBF	514	518	-	6.13	aaagc
HNF4	517	529	-	6.01	agggcaaaatgaa
Snail	534	539	+	7.56	caggtg
deltaEF1	534	539	-	6.48	cacctg
E74A	556	562	-	6.9	caggaaa
ELK1	556	565	-	7.02	gagcaggaaa
c-ETS	556	561	+	6.2	tttcct
Myf	560	571	-	9.03	aggcaggagcag
CFI-USP	568	577	-	6.61	ggggtgaggc
AGL3	576	585	+	6.23	ccaaaattgt
Agamous	576	586	+	6.97	ccaaaattgtc
Sox17	578	586	+	6.77	aaaattgtc
SRY	581	589	-	6.08	tgagacaat
Klf4	629	638	+	6.88	tagaagaggg
Pax4	651	680	-	7.61	ggttcttttccgaacctccccactctccac
ZNF42_1-4	659	664	+	7.08	tgggga
Dorsal_1	669	680	-	6.73	ggttcttttccg
Dorsal_1	670	681	-	6.43	gggttcttttcc
Macho-1	676	684	-	6.1	agggggttc
SPI1	683	688	-	6.46	gggaag
HMG-IY	698	713	-	7.89	gtgcaaaagccataac
NR2F1	702	715	+	7.13	tggcttttgcactc
HNF4	702	714	-	8.76	agtgcaaaagcca
Dof2	703	708	-	6.7	aaagcc
MA0021	703	708	-	6.37	aaagcc
MNB1A	704	708	-	6.5	aaagc
PBF	704	708	-	6.46	aaagc
Gfi	713	722	-	8.31	gaaatcagag
Pax4	717	746	+	6.57	gatttcctgcccccccaaatctcacccctt
E74A	719	725	-	7.2	caggaaa
ELK1	719	728	-	6.67	gggcaggaaa
c-ETS	719	724	+	6.43	tttcct
SP1	720	729	-	6.55	ggggcaggaa
Macho-1	724	732	-	6.38	gggggggca
RREB1	729	748	+	8.84	ccccaaatctcaccccttct
ARR10	731	738	-	7.08	agatttgg
Gfi	732	741	+	7.92	caaatctcac
ZNF42_5-13	738	747	-	7.26	gaaggggtga
Gfi	747	756	-	7.05	ccaatctgag
Dorsal_1	753	764	+	6.71	ttggggtttccc
Dorsal_1	754	765	+	9.19	tggggtttcccc
Dorsal_2	754	763	+	6.91	tggggtttcc
REL	754	763	+	8.76	tggggtttcc
NFKB1	754	764	+	7.48	tggggtttccc
NFKB1	754	764	-	7.02	gggaaacccca
RELA	754	763	+	9.22	tggggtttcc
Dorsal_1	755	766	+	6.76	ggggtttcccca
Dorsal_2	755	764	+	9.2	ggggtttccc
NF-kappaB	755	764	+	9.36	ggggtttccc
NF-kappaB	755	764	-	7.33	gggaaacccc
NFKB1	755	765	+	9.41	ggggtttcccc
NFKB1	755	765	-	8.66	ggggaaacccc
RELA	755	764	+	7.31	ggggtttccc
NF-kappaB	756	765	-	6.27	ggggaaaccc
SPIB	760	766	-	6.27	tggggaa
ZNF42_1-4	761	766	-	7.03	tgggga
AGL3	764	773	+	6.4	ccaaaaagag
Agamous	764	774	+	6.43	ccaaaaagaga
Klf4	770	779	+	6.47	agagagaagg
YY1	792	797	-	6.54	gccatc
HMG-IY	831	846	+	7.51	gaagaaatgcaataaa
Foxd3	849	860	+	6.82	ccttgttgtttt
NF-Y	906	921	-	10.7	gccggccaatcgctgg
Gfi	907	916	-	6.34	ccaatcgctg
TFAP2A	916	924	+	6.44	gccggcgcc
ABI4	916	925	-	9.02	cggcgccggc
ABI4	918	927	+	7.6	cggcgccggt
TCF11-MafG	926	931	-	6.35	catgac
MAX	927	936	-	6.96	ggccacatga

>NM_001554 (1000 bp)

CLUSTER 1
Location: 41 to 968
Score: 6.75
TBP: 2.23
RREB1: 2.22
HAND1-TCF3: 1.05
FOXI1: 0.74
TEAD: 0.711
Foxd3: 0.629
SPIB: 0.574
HMG-IY: 0.57
Foxa2: 0.528
Staf: 0.513
Hunchback: 0.45
HMG-1: 0.427
deltaEF1: 0.426
Broad-complex_1: 0.408
Foxq1: 0.399
SP1: 0.383
NR2F1: 0.38
Klf4: 0.37
ZNF42_1-4: 0.296
Broad-complex_3: 0.279
SPI1: 0.274
PBF: 0.268
MNB1A: 0.265
Fos: 0.254
Dof2: 0.251
NFKB1: 0.248
Broad-complex_4: 0.232
NR3C1: 0.226
CREB1: 0.212
RELA: 0.207
ABI4: 0.202
ZNF42_5-13: 0.195
MA0021: 0.192
Pax4: 0.192
bZIP910: 0.184
Arnt-Ahr: 0.181
Prrx2: 0.173
FOXD1: 0.163
c-ETS: 0.159
HNF4: 0.155
ID1: 0.155
Bapx1: 0.15
Dorsal_2: 0.145
Pax6: 0.139
Macho-1: 0.138
Pax2: 0.134
Dorsal_1: 0.134
SRY: 0.133
SOX9: 0.133
MafB: 0.127
NF-kappaB: 0.12
GAMYB: 0.118
E74A: 0.118
MYB.ph3: 0.117
REL: 0.117
RUSH1-alfa: 0.116
TFAP2A: 0.116
TCF1: 0.102
En1: 0.102
cEBP: 0.101
Nkx2-5: 0.0981
YY1: 0.0957
SU_h: 0.0956
ELK1: 0.0872
HLF: 0.084
Pax5: 0.0759
GABPA: 0.0752
Gata1: 0.0738
Agamous: 0.0735
Ubx: 0.073
RUNX1: 0.0672
SQUA: 0.0664
Broad-complex_2: 0.0659
ESR1: 0.0657
GATA3: 0.064
Pbx: 0.0638
FOXL1: 0.0628
ARR10: 0.0627
Hox11-CTF1: 0.0595
TCF11-MafG: 0.0545
GATA2: 0.0495
FOXC1: 0.0489
E2F1: 0.0487
Chop-cEBP: 0.0461
FOXF2: 0.0431
CFI-USP: 0.0429
Spz1: 0.0413
Athb-1: 0.0373
Myb: 0.0372
Sox17: 0.0369
IRF1: 0.0365
Snail: 0.0349
Sox5: 0.0344
AGL3: 0.0312
Gfi: 0.029
Myf: 0.0268
Arnt: 0.0251
Mycn: 0.0214
bZIP911: 0.0171
RORA: 0.0142
MAX: 0.0127
USF1: 0.0117
NFIL3: 0.00987
Evi1: 0.00862
IRF2: 0.00828
MYC-MAX: 0.00753
ELK4: 0.00672
TAL1-TCF3: 0.0054
RXR-VDR: 0.00537
Ar: 0.00532
NHLH1: 0.00492
NF-Y: 0.00361
CF2-II: 0.00351
RORA1: 0.00264
TP53: 0.00242
Roaz: 0.00199
PPARG: 0.00198
SRF: 0.00175
ATHB5: 0.00167
T: 0.00164
MEF2A: 0.00147
PPARG-RXRA: 0.000133
NR1H2-RXR: 1.01e-05
GGAGAACTCCCCGCGTTCGTTTCCTCTcggacttccaacccaggcagtgggctggaactAAAGTGGGAACCTCCAAAAACAAACAAGTACAACatacCCAAAAGAGGGAAGGgctggaggagtgggggagacctctgcCTGGGAATTTGCCAGACGATGGGCAAGTTTCCCCCCGCCCCACCCCCCCCCCGCCTtTTCATTCATAAATGCCACTGtGGGTATTAATTTGCaattcacTGAACTTTGCTAATAAACATCAtgccAAAGCTTTGGGACTTGTTCCGAACACGCCtcttTGAAGTCCACaaataTTCCTGACTCAGagacacactcctcttccccgttctactctttcaacagataacttgcctctcaccttcgcTGTAAAAAAGCAAACAGCTcactgccTTCCCGGGTGAGGGCTTCAGTGGCtgcccggtcaactcgcatCACCAAACAAAACGACTTTTGTTCctccctctcaggtcctcccacccacccagtcCAGGCAAAGTTCTGAACTGGcccccctcgcccctcacgaccctccaactaccatcaccaccatcacgccccaaagaacccttcccaacataaGTCGTAATTTAAGGTGGAAAAAACGAACTGTTTTCTTGACGGGTCTGGGACacacacacacacacacacacacacacacacaccccccGAACTGTTTTCTTGACGGGTCTGGGAGACAGACacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacaAAGGTGcaatggagccaggggaggcgcttggcagcagcccgcgccaaccAGCATTCCTGAGATGTTTGAGAATTCTGGAACGCGcagacagagccGACGTCACTGCAacacgCGGCGCCTCCgccggcCCGTATAAAAGGCGGGC
NFKB1	41	51	-	7.04	gggagttctcc
Staf	44	63	+	8.22	gaactccccgcgttcgtttc
ZNF42_1-4	48	53	-	6.03	cgggga
IRF1	53	64	-	6.23	ggaaacgaacgc
GAMYB	55	64	-	6.87	ggaaacgaac
E74A	60	66	-	6.14	gaggaaa
c-ETS	60	65	+	6.97	tttcct
SPIB	61	67	-	8.94	agaggaa
MA0021	100	105	+	6.1	aaagtg
SU_h	101	116	+	6.26	aagtgggaacctccaa
Foxd3	117	128	-	8.27	acttgtttgttt
FOXI1	117	128	-	9.24	acttgtttgttt
Foxa2	117	128	-	7.96	acttgtttgttt
HMG-1	125	133	-	7.05	gttgtactt
Agamous	138	148	+	6.2	ccaaaagaggg
Klf4	139	148	+	6.03	caaaagaggg
Klf4	143	152	+	7.5	agagggaagg
SPI1	146	151	+	6.36	gggaag
Hox11-CTF1	179	192	-	6.03	tggcaaattcccag
Hox11-CTF1	180	193	+	6.24	tgggaatttgccag
NF-kappaB	181	190	+	6.86	gggaatttgc
Pax4	181	210	-	7.03	ggaaacttgcccatcgtctggcaaattccc
RELA	181	190	+	7.81	gggaatttgc
HAND1-TCF3	187	196	-	8.25	cgtctggcaa
ZNF42_5-13	195	204	+	6.02	cgatgggcaa
NR2F1	197	210	-	6.49	ggaaacttgcccat
Pax4	200	229	+	7.38	ggcaagtttccccccgccccaccccccccc
Pax4	201	230	+	8.27	gcaagtttccccccgccccacccccccccc
RREB1	209	228	+	6.33	ccccccgccccacccccccc
RREB1	210	229	+	8.2	cccccgccccaccccccccc
RREB1	211	230	+	11.5	ccccgccccacccccccccc
RREB1	213	232	+	6.48	ccgccccaccccccccccgc
RREB1	215	234	+	6.61	gccccaccccccccccgcct
SP1	220	229	-	7.18	gggggggggt
Pax6	236	249	+	6.42	ttcattcataaatg
TBP	241	255	+	6.13	tcataaatgccactg
FOXI1	257	268	+	6.51	gggtattaattt
TCF1	257	270	+	6.81	gggtattaatttgc
Prrx2	263	267	-	6.59	aatta
NR2F1	278	291	+	8.86	tgaactttgctaat
HNF4	278	290	-	6.77	ttagcaaagttca
Broad-complex_4	288	298	+	6.29	taataaacatc
FOXI1	288	299	-	8.01	tgatgtttatta
Foxq1	289	299	-	9.09	tgatgtttatt
FOXD1	290	297	+	6.58	ataaacat
Dof2	304	309	+	6.54	aaagct
MNB1A	304	308	+	6.52	aaagc
PBF	304	308	+	6.48	aaagc
Dof2	306	311	-	6.25	aaagct
HMG-IY	307	322	-	8.11	gaacaagtcccaaagc
MNB1A	307	311	-	6.08	aaagc
PBF	307	311	-	6.03	aaagc
SPI1	319	324	-	6.19	cggaac
HMG-1	324	332	-	6.12	ggcgtgttc
Dorsal_2	337	346	-	6.36	gtggacttca
SPIB	352	358	-	6.13	tcaggaa
Fos	355	362	+	6.4	ctgactca
Fos	356	363	-	7.41	ctgagtca
Dorsal_1	423	434	-	6.09	tgcttttttaca
FOXD1	424	431	+	7.4	gtaaaaaa
HMG-IY	424	439	+	7.69	gtaaaaaagcaaacag
Foxd3	426	437	-	6.34	gtttgctttttt
Dof2	429	434	+	6.94	aaagca
MA0021	429	434	+	6.46	aaagca
MNB1A	429	433	+	6.43	aaagc
PBF	429	433	+	6.38	aaagc
Foxa2	430	441	-	7.45	agctgtttgctt
Pax6	449	462	+	6.23	ttcccgggtgaggg
TFAP2A	455	463	-	6.44	gccctcacc
Bapx1	464	472	+	6.24	ttcagtggc
FOXI1	491	502	-	6.1	ttttgtttggtg
Broad-complex_3	494	504	+	6.42	caaacaaaacg
MA0021	504	509	-	6.58	aaagtc
SOX9	506	514	-	7.09	gaacaaaag
HNF4	546	558	+	6.21	caggcaaagttct
NR3C1	548	565	+	7.33	ggcaaagttctgaactgg
PBF	551	555	+	6.22	aaagt
HMG-1	638	646	+	7.77	gtcgtaatt
Prrx2	642	646	-	7.34	aatta
HMG-IY	645	660	+	6.84	tttaaggtggaaaaaa
deltaEF1	648	653	-	8.02	cacctt
Foxd3	654	665	-	6.38	gttcgttttttc
NR3C1	655	672	-	6.74	gaaaacagttcgtttttt
Broad-complex_1	662	675	-	6.82	caagaaaacagttc
MYB.ph3	662	670	+	7.54	gaactgttt
Foxd3	663	674	+	8.77	aactgttttctt
Foxa2	663	674	+	8.54	aactgttttctt
Broad-complex_4	664	674	-	6.69	aagaaaacagt
Pax5	664	683	-	6.68	agacccgtcaagaaaacagt
SRY	664	672	-	6.87	gaaaacagt
FOXD1	665	672	-	6.23	gaaaacag
Klf4	665	674	-	6.1	aagaaaacag
Broad-complex_3	666	676	-	7.56	tcaagaaaaca
Hunchback	666	675	-	8.31	caagaaaaca
Pbx	668	679	-	6.63	ccgtcaagaaaa
CREB1	669	680	+	6.96	tttcttgacggg
Hunchback	670	679	-	6.62	ccgtcaagaa
SP1	678	687	+	7.62	gggtctggga
HAND1-TCF3	679	688	+	8.42	ggtctgggac
Broad-complex_1	726	739	-	8.05	caagaaaacagttc
MYB.ph3	726	734	+	8.14	gaactgttt
MYB.ph3	726	734	-	6.32	aaacagttc
Foxq1	727	737	+	6.29	aactgttttct
Foxd3	727	738	+	9.93	aactgttttctt
Foxa2	727	738	+	9.71	aactgttttctt
Broad-complex_4	728	738	-	8.1	aagaaaacagt
Pax5	728	747	-	8.24	agacccgtcaagaaaacagt
FOXF2	728	741	-	6.99	gtcaagaaaacagt
SRY	728	736	-	7.87	gaaaacagt
Sox5	728	734	-	6.32	aaacagt
FOXD1	729	736	-	7.48	gaaaacag
Klf4	729	738	-	7.76	aagaaaacag
Broad-complex_3	730	740	-	8.9	tcaagaaaaca
Dof2	730	735	-	6.1	aaaaca
Evi1	730	743	-	6.74	ccgtcaagaaaaca
Hunchback	730	739	-	9.79	caagaaaaca
Staf	730	749	-	6.56	ccagacccgtcaagaaaaca
HMG-1	731	739	+	7.02	gttttcttg
Hunchback	731	740	-	6.82	tcaagaaaac
RUSH1-alfa	731	738	+	7.01	gttttctt
Pbx	732	743	-	7.6	ccgtcaagaaaa
CREB1	733	744	+	7.55	tttcttgacggg
E74A	733	739	-	6.01	caagaaa
Hunchback	734	743	-	7.16	ccgtcaagaa
ESR1	741	758	-	6.26	gtctgtctcccagacccg
SP1	742	751	+	7.1	gggtctggga
HAND1-TCF3	743	752	+	8.66	ggtctgggag
ZNF42_5-13	744	753	+	6.14	gtctgggaga
deltaEF1	824	829	-	7.15	cacctt
TEAD	873	884	+	9.42	agcattcctgag
E74A	876	882	-	6.94	caggaat
c-ETS	876	881	+	6.15	attcct
SPIB	877	883	-	8.25	tcaggaa
Pax5	880	899	-	6.35	agaattctcaaacatctcag
RUSH1-alfa	882	889	-	6.29	aacatctc
ARR10	883	890	+	6.02	agatgttt
Broad-complex_1	885	898	+	7.52	atgtttgagaattc
HMG-IY	885	900	-	6.71	cagaattctcaaacat
Broad-complex_1	886	899	-	8.58	agaattctcaaaca
HLF	886	897	+	6.91	tgtttgagaatt
SU_h	887	902	+	6.19	gtttgagaattctgga
Staf	888	907	-	8.82	cgcgttccagaattctcaaa
cEBP	888	899	+	6.55	tttgagaattct
HAND1-TCF3	895	904	+	7.18	attctggaac
CREB1	919	930	-	7.43	tgcagtgacgtc
bZIP910	920	926	-	7.63	gtgacgt
Pax2	921	928	+	6.12	cgtcactg
ABI4	936	945	+	6.93	cggcgcctcc
Hunchback	952	961	+	6.02	ccgtataaaa
TBP	954	968	+	11	gtataaaaggcgggc

>NM_002037 (1000 bp)

CLUSTER 1
Location: 7 to 659
Score: 6.23
Myf: 2.71
RREB1: 2.22
Chop-cEBP: 1.28
SQUA: 0.704
Athb-1: 0.547
Gfi: 0.456
ZNF42_1-4: 0.437
Hunchback: 0.378
Snail: 0.362
SPIB: 0.354
Klf4: 0.349
SU_h: 0.293
NF-Y: 0.28
Foxd3: 0.265
E74A: 0.264
Evi1: 0.236
c-ETS: 0.23
ZNF42_5-13: 0.208
ELK1: 0.203
FOXI1: 0.201
SPI1: 0.198
ID1: 0.197
NR3C1: 0.195
Broad-complex_4: 0.192
HMG-IY: 0.19
SP1: 0.19
Dof2: 0.188
MNB1A: 0.184
Sox5: 0.172
PBF: 0.158
Broad-complex_3: 0.154
GATA3: 0.151
HNF4: 0.146
Macho-1: 0.143
MA0021: 0.139
Pax4: 0.136
Broad-complex_2: 0.134
deltaEF1: 0.131
HMG-1: 0.119
RELA: 0.119
RUSH1-alfa: 0.115
SOX9: 0.114
Broad-complex_1: 0.113
Nkx2-5: 0.107
Staf: 0.106
TCF11-MafG: 0.103
IRF1: 0.0941
En1: 0.094
YY1: 0.0924
GATA2: 0.092
Gata1: 0.0912
Pax2: 0.0902
Bapx1: 0.0878
Pax5: 0.0843
HAND1-TCF3: 0.0811
Arnt: 0.0783
SRY: 0.0771
Ubx: 0.0756
Prrx2: 0.0742
FOXC1: 0.0733
TBP: 0.0687
Spz1: 0.068
GAMYB: 0.067
Sox17: 0.0668
MafB: 0.0665
Myb: 0.0657
ELK4: 0.0654
REL: 0.0643
FOXL1: 0.0624
Dorsal_1: 0.0606
ABI4: 0.0589
Pbx: 0.0572
Agamous: 0.0561
GABPA: 0.0552
E2F1: 0.0512
ARR10: 0.05
MYB.ph3: 0.0481
Foxa2: 0.0445
RUNX1: 0.0417
ATHB5: 0.0398
TFAP2A: 0.0383
cEBP: 0.034
NR2F1: 0.0315
TEAD: 0.0302
CFI-USP: 0.0284
Dorsal_2: 0.0283
Fos: 0.0272
Mycn: 0.026
FOXD1: 0.0257
AGL3: 0.0243
NFKB1: 0.0229
HLF: 0.0209
Arnt-Ahr: 0.0199
NHLH1: 0.0192
FOXF2: 0.0166
Hox11-CTF1: 0.0141
MYC-MAX: 0.0136
Foxq1: 0.0135
USF1: 0.0134
T: 0.013
MAX: 0.0122
NF-kappaB: 0.0101
NFIL3: 0.00999
Ar: 0.0094
RORA: 0.00933
IRF2: 0.00924
TCF1: 0.0086
Pax6: 0.00688
MEF2A: 0.00498
CREB1: 0.00484
ESR1: 0.0047
CF2-II: 0.00455
TAL1-TCF3: 0.003
bZIP910: 0.00287
TP53: 0.00158
RORA1: 0.00154
RXR-VDR: 0.00146
PPARG: 0.000674
PPARG-RXRA: 0.00062
SRF: 0.000517
bZIP911: 0.000321
Roaz: 0.000116
NR1H2-RXR: 3.77e-05
TCAGGAAGccaaagtGTTTCTTTTTATGAAGTTACATCCTGCCATAGaaaagctggataggaaataaagacCGATGCACTCCCAACTGTATACTAAACCggCAATTATTTcatcaagggaaatatgagcaaaagCTCAGATTCAgtgaaggggaaaaaaacatgagaagtttgaatgTTATGAGAAACCAAAGACAACCAATGACTACAATTAAacgaGGTTTTTTGGGGGTGGGGCGGGGAATGTAcgaaCAAATCTCTGtcaTTTCAGGTTCcttagTCGCCGCTTGGCCCCTCCCCCTATttcagtaatacttcctccagacttttgcTAGAAAAAAAATATAAATGAGTGTCCGCAGAAATAGGGGACTGAtaaaatgatcctaatctccttctcctcCTCATTGTTATTTGTTGtgcgtttcCACGTTTCAGGACAGGATTCTACTttgctccgtactcttttcagtttgatcaaagaaaacgctgctaTCACCGCCCAattttccatttcatcctctcaccctcAAATGAAAAGacaccagaAAGGCAAGATAGCCctgtctcgAGGCAGTTTCCCATGGTTTTGGGGGAATGGCAGGTGccaatCTGCAGCAGCAGCTGCAACCTTCCGCAAAGCGGAAACTGCAG
SPIB	7	13	+	6.06	tcaggaa
E74A	8	14	+	7.05	caggaag
HMG-IY	22	37	-	6.14	cttcataaaaagaaac
SQUA	22	35	-	9.43	tcataaaaagaaac
Hunchback	26	35	-	6.82	tcataaaaag
Staf	34	53	+	6.25	gaagttacatcctgccatag
Chop-cEBP	78	89	+	10.2	cgatgcactccc
Bapx1	81	89	-	7.25	gggagtgca
Myb	89	96	-	6.3	tacagttg
Broad-complex_3	95	105	+	6.29	tatactaaacc
Athb-1	108	115	+	8.89	caattatt
Nkx2-5	108	114	-	6.04	ataattg
ATHB5	108	116	+	6.06	caattattt
Gfi	141	150	-	6.37	tgaatctgag
SU_h	184	199	+	6.08	ttatgagaaaccaaag
NF-Y	199	214	+	7.75	gacaaccaatgactac
Nkx2-5	214	220	-	6.34	ttaattg
RREB1	225	244	-	7.6	cgccccacccccaaaaaacc
Hunchback	226	235	-	6.53	cccaaaaaac
Hunchback	227	236	-	7.64	ccccaaaaaa
RREB1	228	247	-	12.1	ccccgccccacccccaaaaa
Macho-1	231	239	+	6.35	ttgggggtg
SP1	239	248	+	8.64	ggggcgggga
TEAD	242	253	-	7.18	tacattccccgc
ZNF42_1-4	243	248	+	6.71	cgggga
Gfi	258	267	+	8.14	caaatctctg
ELK1	271	280	-	6.89	gaacctgaaa
NF-Y	286	301	-	6.33	aggggccaagcggcga
HNF4	287	299	-	6.46	gggccaagcggcg
HNF4	294	306	-	6.6	gggggaggggcca
Klf4	298	307	-	6.6	agggggaggg
Klf4	299	308	-	6.36	tagggggagg
ZNF42_5-13	300	309	-	6.92	atagggggag
ZNF42_1-4	301	306	-	6.61	ggggga
Broad-complex_4	338	348	+	7.48	tagaaaaaaaa
Hunchback	338	347	+	6.77	tagaaaaaaa
Hunchback	339	348	+	6.2	agaaaaaaaa
Hunchback	340	349	+	7.7	gaaaaaaaat
Foxd3	342	353	-	8.1	ttatattttttt
TBP	348	362	+	6.52	atataaatgagtgtc
Staf	362	381	-	6.28	tcagtcccctatttctgcgg
Broad-complex_2	368	375	-	6.34	ccctattt
ZNF42_1-4	372	377	+	7.59	agggga
Sox17	409	417	+	6.38	ctcattgtt
Sox5	412	418	-	7.27	taacaat
FOXI1	414	425	+	7.52	tgttatttgttg
Arnt	434	439	-	6.33	aacgtg
NR3C1	440	457	-	7.28	agtagaatcctgtcctga
SP1	501	510	-	6.21	tgggcggtga
Klf4	537	546	+	6.38	aaatgaaaag
Evi1	555	568	+	7.64	aaggcaagatagcc
GATA3	561	566	+	6.34	agatag
SU_h	577	592	-	7.96	ccatgggaaactgcct
RELA	578	587	+	6.95	ggcagtttcc
SOX9	587	595	-	6.85	aaaccatgg
Pax5	590	609	+	7.2	tggttttgggggaatggcag
ZNF42_5-13	594	603	+	6.38	tttgggggaa
Macho-1	595	603	+	6.32	ttgggggaa
Klf4	596	605	+	6.02	tgggggaatg
ZNF42_1-4	596	601	+	6.05	tggggg
ZNF42_1-4	597	602	+	7.41	ggggga
Snail	607	612	+	8.56	caggtg
deltaEF1	607	612	-	7.49	cacctg
Myf	618	629	+	7.7	ctgcagcagcag
NHLH1	621	632	+	6.16	cagcagcagctg
Myf	621	632	+	11.5	cagcagcagctg
Myf	621	632	-	8.22	cagctgctgctg
NHLH1	624	635	+	6.66	cagcagctgcaa
Myf	624	635	+	7.29	cagcagctgcaa
Spz1	629	639	-	6.18	aaggttgcagc
SPI1	637	642	-	6.28	cggaag
SPIB	638	644	-	6.57	tgcggaa
ID1	641	652	-	6.09	ttccgctttgcg
MA0021	644	649	+	6.58	aaagcg
ELK1	644	653	+	6.01	aaagcggaaa
SPIB	646	652	+	7.82	agcggaa
E74A	647	653	+	6.29	gcggaaa
Myf	648	659	+	7.81	cggaaactgcag
c-ETS	648	653	-	6.02	tttccg

>NM_003633 (1000 bp)

CLUSTER 1
Location: 56 to 378
Score: 7.1
Hox11-CTF1: 3.45
MYC-MAX: 1.88
RREB1: 1.35
NF-Y: 1.21
HNF4: 0.749
Hunchback: 0.338
Broad-complex_4: 0.328
HMG-IY: 0.2
MA0021: 0.199
Broad-complex_1: 0.185
Dof2: 0.172
Myf: 0.158
ZNF42_1-4: 0.155
Broad-complex_3: 0.147
ID1: 0.128
PBF: 0.124
ABI4: 0.121
Klf4: 0.121
MNB1A: 0.118
TFAP2A: 0.108
IRF1: 0.106
Nkx2-5: 0.105
deltaEF1: 0.0731
PPARG: 0.0631
SP1: 0.0602
c-ETS: 0.0587
HAND1-TCF3: 0.0552
SPIB: 0.0509
MafB: 0.05
Bapx1: 0.0475
En1: 0.0456
Macho-1: 0.0441
TEAD: 0.0435
Broad-complex_2: 0.0391
RUSH1-alfa: 0.0389
ZNF42_5-13: 0.0375
Ubx: 0.0361
TBP: 0.0358
Chop-cEBP: 0.0329
FOXL1: 0.0318
FOXD1: 0.0315
GATA3: 0.0306
Gata1: 0.0292
Pax2: 0.0292
RXR-VDR: 0.0281
Mycn: 0.0281
Arnt: 0.0281
Fos: 0.0277
E74A: 0.0274
Arnt-Ahr: 0.0262
TP53: 0.0254
NR2F1: 0.0239
HMG-1: 0.0227
YY1: 0.0225
FOXI1: 0.0222
USF1: 0.0222
MAX: 0.022
Staf: 0.022
GATA2: 0.022
SPI1: 0.0208
Foxq1: 0.0196
ELK1: 0.0192
Dorsal_2: 0.019
REL: 0.0188
SRY: 0.0177
cEBP: 0.0176
MYB.ph3: 0.0176
Gfi: 0.0175
Pax5: 0.0165
Dorsal_1: 0.0153
ESR1: 0.0153
RELA: 0.0144
Prrx2: 0.0142
GABPA: 0.0121
FOXC1: 0.0107
ARR10: 0.0104
NFKB1: 0.0103
Spz1: 0.00913
GAMYB: 0.00861
Snail: 0.00818
E2F1: 0.00798
NHLH1: 0.00775
Pax4: 0.00753
SQUA: 0.007
Myb: 0.00581
TCF11-MafG: 0.00535
NF-kappaB: 0.00509
Pbx: 0.00506
SOX9: 0.00484
RORA: 0.00482
Agamous: 0.00435
CREB1: 0.00395
NR3C1: 0.00393
FOXF2: 0.00372
RUNX1: 0.0033
HLF: 0.00311
ELK4: 0.0028
Foxa2: 0.00261
Sox17: 0.00254
IRF2: 0.00247
Sox5: 0.00216
Athb-1: 0.00194
Roaz: 0.00176
Ar: 0.00168
CFI-USP: 0.00161
TCF1: 0.00144
SU_h: 0.00101
CF2-II: 0.000998
Foxd3: 0.000971
NFIL3: 0.000904
Pax6: 0.000761
AGL3: 0.000753
T: 0.000678
bZIP910: 0.000434
Evi1: 0.000366
MEF2A: 0.000243
TAL1-TCF3: 0.000134
bZIP911: 0.000132
ATHB5: 0.000109
RORA1: 7.88e-05
NR1H2-RXR: 1.16e-05
SRF: 8.12e-06
PPARG-RXRA: 5.73e-06
cCATTTCTTTACTGaACTCCAAACTAACACCACCGAGCGATAAAAAACAGGAGAAGGTGatggaggcttaatcgctaggagaGGAGGCGGCGtggctgcTGCTTTGAGGAGTTCACTTTGAATCAAgcggccGCGGCGATTGGCTGAAAAGCACGTGGTGcgcgccccgcaggactgcgccccggctgcccCTGCAGTCGCCTggcttAGGGCAGAGTCCAgccgggggtgccgcacccacTGGGGAgTGGGGAgggaggacacATAGGAAAtgcctggggctggagtctcTTTGGCTCTCTGCCAGCAAGAAACTTAAACGT
Klf4	57	66	-	6.37	taaagaaatg
Broad-complex_4	59	69	-	8.15	cagtaaagaaa
Hunchback	60	69	-	6.79	cagtaaagaa
RREB1	71	90	+	6.98	actccaaactaacaccaccg
RREB1	72	91	+	9.91	ctccaaactaacaccaccga
FOXI1	76	87	-	6.44	tggtgttagttt
Hunchback	92	101	+	6.56	gcgataaaaa
Hunchback	93	102	+	8.18	cgataaaaaa
TBP	93	107	+	6.35	cgataaaaaacagga
ID1	93	104	-	7.4	tgttttttatcg
Broad-complex_1	95	108	+	7.94	ataaaaaacaggag
deltaEF1	109	114	-	6.22	cacctt
ABI4	138	147	-	6.63	cgccgcctcc
Dof2	155	160	-	7.4	aaagca
MA0021	155	160	-	6.93	aaagca
MNB1A	156	160	-	6.63	aaagc
PBF	156	160	-	6.59	aaagc
RXR-VDR	156	170	+	6.25	gctttgaggagttca
PPARG	162	181	-	6.36	ttgattcaaagtgaactcct
HNF4	167	179	-	6.1	gattcaaagtgaa
Bapx1	167	175	-	6.04	caaagtgaa
MA0021	169	174	-	7.38	aaagtg
MNB1A	170	174	-	6.26	aaagt
PBF	170	174	-	6.68	aaagt
NF-Y	188	203	-	9.65	ttcagccaatcgccgc
Dorsal_1	199	210	-	6.43	cgtgcttttcag
Dof2	203	208	+	7.53	aaagca
MA0021	203	208	+	7.06	aaagca
MNB1A	203	207	+	6.66	aaagc
PBF	203	207	+	6.61	aaagc
MAX	204	213	+	7.54	aagcacgtgg
MYC-MAX	204	214	+	11.6	aagcacgtggt
MYC-MAX	205	215	-	6.52	caccacgtgct
MAX	206	215	-	6.42	caccacgtgc
USF1	206	212	-	6.01	cacgtgc
Arnt	207	212	+	7.45	cacgtg
Arnt	207	212	-	7.45	cacgtg
USF1	207	213	+	7.8	cacgtgg
Mycn	207	212	+	7.53	cacgtg
Mycn	207	212	-	7.53	cacgtg
Myf	247	258	-	6.8	aggcgactgcag
HNF4	264	276	+	8.89	agggcagagtcca
ZNF42_1-4	297	302	+	6.22	tgggga
ZNF42_1-4	304	309	+	6.32	tgggga
SPIB	320	326	+	6.17	ataggaa
c-ETS	322	327	-	6.38	tttcct
E2F1	347	354	+	6.01	tttggctc
Hox11-CTF1	348	361	-	12.3	tggcagagagccaa
Hox11-CTF1	349	362	+	6.98	tggctctctgccag
HMG-IY	363	378	+	7.56	caagaaacttaaacgt
Broad-complex_3	366	376	+	7.05	gaaacttaaac
IRF1	366	377	+	6.74	gaaacttaaacg
Nkx2-5	368	374	-	6.54	ttaagtt

>NM_021643 (1000 bp)

CLUSTER 1
Location: 553 to 728
Score: 8.35
Roaz: 2.09
Pbx: 1.55
Chop-cEBP: 0.417
FOXF2: 0.377
FOXD1: 0.224
HMG-IY: 0.199
REL: 0.113
SRY: 0.0994
FOXL1: 0.066
ABI4: 0.0603
c-ETS: 0.0598
RUSH1-alfa: 0.0576
Dorsal_2: 0.0571
TFAP2A: 0.0554
Broad-complex_3: 0.0506
Broad-complex_4: 0.0488
MafB: 0.0453
En1: 0.0416
YY1: 0.0405
Gfi: 0.0374
Fos: 0.0369
ZNF42_1-4: 0.0366
SPI1: 0.0356
HAND1-TCF3: 0.035
GATA3: 0.0303
E74A: 0.025
Gata1: 0.0211
GATA2: 0.0202
ARR10: 0.0194
IRF1: 0.019
Foxa2: 0.0176
Pax4: 0.0154
RELA: 0.0152
Pax2: 0.0149
Sox5: 0.0148
Dorsal_1: 0.0117
SOX9: 0.0108
NHLH1: 0.0107
Myf: 0.0104
Broad-complex_2: 0.0101
cEBP: 0.00949
Nkx2-5: 0.00949
Macho-1: 0.00907
NR3C1: 0.0087
Ubx: 0.0083
Myb: 0.00741
Prrx2: 0.00716
GABPA: 0.00714
Broad-complex_1: 0.00682
SP1: 0.00677
MNB1A: 0.00616
Dof2: 0.0061
ID1: 0.00606
Bapx1: 0.00545
Spz1: 0.00536
NFKB1: 0.00517
NF-kappaB: 0.00499
Athb-1: 0.00495
TEAD: 0.0047
Foxd3: 0.0047
E2F1: 0.00467
Arnt-Ahr: 0.00454
FOXC1: 0.00436
ELK1: 0.0039
TCF11-MafG: 0.00372
PBF: 0.00371
GAMYB: 0.00348
HLF: 0.00296
Hunchback: 0.00295
Klf4: 0.00275
TCF1: 0.00259
SPIB: 0.00246
deltaEF1: 0.00245
Sox17: 0.00229
HNF4: 0.00225
MA0021: 0.00221
Pax5: 0.00219
ZNF42_5-13: 0.00208
RUNX1: 0.00206
MYB.ph3: 0.00177
CF2-II: 0.00164
HMG-1: 0.00143
CREB1: 0.00142
Ar: 0.00138
ELK4: 0.00136
Foxq1: 0.00132
Snail: 0.00131
FOXI1: 0.00125
Agamous: 0.000693
NFIL3: 0.000689
RXR-VDR: 0.000611
MAX: 0.000607
SU_h: 0.000599
IRF2: 0.000543
NR2F1: 0.000509
CFI-USP: 0.000446
Arnt: 0.000427
Mycn: 0.000415
RREB1: 0.000305
USF1: 0.000288
SQUA: 0.000208
bZIP910: 0.000194
ESR1: 0.000181
RORA: 0.000175
AGL3: 0.00017
Staf: 0.000165
TBP: 0.000163
MYC-MAX: 0.000162
PPARG: 0.00014
ATHB5: 0.000103
Pax6: 8.51e-05
TAL1-TCF3: 8.01e-05
NF-Y: 5.31e-05
bZIP911: 3.23e-05
RORA1: 2.74e-05
Evi1: 2.24e-05
MEF2A: 2.09e-05
Hox11-CTF1: 1.2e-05
SRF: 5.01e-06
T: 4.1e-06
PPARG-RXRA: 1.79e-06
NR1H2-RXR: 1.3e-06
TP53: 1.1e-06
GACACCCAGGGTGCTgcgcccggggccccGGGCCGCGGAAGGATATTTCACTTTGTTTACCTCCCCGGCCgggcgagggagctgcgaggccggtgctggcgcccccggcacggAGCTGCAATGGCagcggcgcggggagccgcccgaggactggcagcggcggGGCTGATTGATGG
Roaz	553	567	-	10.7	agcaccctgggtgtc
Pax4	582	611	-	8.5	taaacaaagtgaaatatccttccgcggccc
Pax4	586	615	-	7.73	gaggtaaacaaagtgaaatatccttccgcg
Pax4	587	616	-	6.53	ggaggtaaacaaagtgaaatatccttccgc
Pax4	588	617	-	7.09	gggaggtaaacaaagtgaaatatccttccg
SPI1	588	593	+	6.08	cggaag
NR3C1	588	605	+	8.15	cggaaggatatttcactt
Pax4	589	618	+	7.18	ggaaggatatttcactttgtttacctcccc
Pax4	589	618	-	7.81	ggggaggtaaacaaagtgaaatatccttcc
NR3C1	589	606	+	8.98	ggaaggatatttcacttt
En1	590	600	+	6.34	gaaggatattt
Pax4	590	619	+	9.7	gaaggatatttcactttgtttacctccccg
NR3C1	590	607	-	6.59	caaagtgaaatatccttc
En1	591	601	+	6.39	aaggatatttc
Pax4	591	620	+	8.9	aaggatatttcactttgtttacctccccgg
Pax5	592	611	-	6.58	taaacaaagtgaaatatcct
Pax4	592	621	+	8.66	aggatatttcactttgtttacctccccggc
c-ETS	592	597	-	7.36	tatcct
REL	592	601	+	6.77	aggatatttc
Ar	593	614	-	7.1	aggtaaacaaagtgaaatatcc
Dorsal_2	593	602	+	7.73	ggatatttca
GATA2	593	597	+	6.21	ggata
Pax4	593	622	+	10.9	ggatatttcactttgtttacctccccggcc
REL	593	602	+	7.29	ggatatttca
REL	593	602	-	7.46	tgaaatatcc
RELA	593	602	-	6.25	tgaaatatcc
NR3C1	593	610	+	7.57	ggatatttcactttgttt
Ar	594	615	+	6.03	gatatttcactttgtttacctc
Broad-complex_1	594	607	-	6.41	caaagtgaaatatc
Chop-cEBP	594	605	-	12.1	aagtgaaatatc
HMG-IY	594	609	-	10.1	aacaaagtgaaatatc
TEAD	594	605	+	7.11	gatatttcactt
REL	594	603	-	6.21	gtgaaatatc
cEBP	594	605	-	8.45	aagtgaaatatc
Broad-complex_4	595	605	-	11.4	aagtgaaatat
Pax5	595	614	-	9.33	aggtaaacaaagtgaaatat
En1	595	605	-	8.37	aagtgaaatat
HMG-IY	595	610	-	14.1	aaacaaagtgaaatat
PPARG	595	614	+	6.92	atatttcactttgtttacct
NR3C1	595	612	-	10.5	gtaaacaaagtgaaatat
Ar	596	617	+	8.95	tatttcactttgtttacctccc
Broad-complex_1	596	609	-	10.4	aacaaagtgaaata
En1	596	606	-	6.9	aaagtgaaata
FOXL1	596	603	-	7.64	gtgaaata
HLF	596	607	+	6.86	tatttcactttg
HMG-IY	596	611	-	7.51	taaacaaagtgaaata
IRF1	596	607	-	11.7	caaagtgaaata
IRF2	596	613	-	7.91	ggtaaacaaagtgaaata
Staf	596	615	+	6.88	tatttcactttgtttacctc
RUSH1-alfa	596	603	+	6.84	tatttcac
ID1	596	607	+	8.12	tatttcactttg
Broad-complex_3	597	607	-	6.26	caaagtgaaat
HMG-IY	597	612	-	9.67	gtaaacaaagtgaaat
IRF2	597	614	-	6.13	aggtaaacaaagtgaaat
Pax6	597	610	+	6.39	atttcactttgttt
RXR-VDR	597	611	+	8.33	atttcactttgttta
SQUA	597	610	-	6.93	aaacaaagtgaaat
NR3C1	597	614	-	7.36	aggtaaacaaagtgaaat
ELK1	598	607	-	6.35	caaagtgaaa
Pax2	598	605	+	7.19	tttcactt
cEBP	598	609	+	6.33	tttcactttgtt
ID1	598	609	+	8.57	tttcactttgtt
Broad-complex_4	599	609	-	6.49	aacaaagtgaa
FOXI1	599	610	+	6.83	ttcactttgttt
HMG-IY	599	614	-	6.13	aggtaaacaaagtgaa
HNF4	599	611	-	7.21	taaacaaagtgaa
Bapx1	599	607	-	7.73	caaagtgaa
Broad-complex_4	600	610	-	6.33	aaacaaagtga
MAX	600	609	-	6.29	aacaaagtga
Broad-complex_3	601	611	-	12.3	taaacaaagtg
Dof2	601	606	-	6.17	aaagtg
MA0021	601	606	-	8.45	aaagtg
Sox17	601	609	+	7.27	cactttgtt
Broad-complex_1	602	615	-	9.06	gaggtaaacaaagt
En1	602	612	+	6.55	actttgtttac
Klf4	602	611	-	7.44	taaacaaagt
MNB1A	602	606	-	7.66	aaagt
PBF	602	606	-	8.08	aaagt
SOX9	602	610	-	8.23	aaacaaagt
SU_h	602	617	-	6.17	gggaggtaaacaaagt
Foxq1	603	613	+	7.2	ctttgtttacc
Foxd3	603	614	+	9.29	ctttgtttacct
Foxa2	603	614	+	10.8	ctttgtttacct
ID1	603	614	+	7.69	ctttgtttacct
Broad-complex_4	604	614	-	11.2	aggtaaacaaa
CREB1	604	615	+	7.47	tttgtttacctc
FOXF2	604	617	-	13.5	gggaggtaaacaaa
FOXL1	604	611	-	7.26	taaacaaa
GAMYB	604	613	-	7.24	ggtaaacaaa
SRY	604	612	-	12.4	gtaaacaaa
Sox5	604	610	-	8.33	aaacaaa
REL	604	613	+	6.02	tttgtttacc
Spz1	604	614	-	7.55	aggtaaacaaa
FOXD1	605	612	-	13.1	gtaaacaa
Hunchback	605	614	-	6.48	aggtaaacaa
RUSH1-alfa	608	615	+	7.66	tttacctc
Chop-cEBP	666	677	+	8.28	agctgcaatggc
YY1	672	677	-	6.24	gccatt
Gfi	716	725	-	8.2	tcaatcagcc
Pbx	717	728	-	11.4	ccatcaatcagc
MafB	717	724	+	7.65	gctgattg
Fos	718	725	+	6.14	ctgattga
Gata1	719	724	+	6.73	tgattg
GATA2	719	723	+	6.4	tgatt
GATA3	719	724	+	8.02	tgattg
Nkx2-5	719	725	-	6.45	tcaatca
SOX9	719	727	-	7.03	catcaatca
Fos	719	726	-	8.26	atcaatca
Sox5	721	727	-	7.03	catcaat

>NM_005794 (1000 bp)

CLUSTER 1
Location: 707 to 938
Score: 7.32
NF-Y: 10.6
Ar: 0.321
ZNF42_1-4: 0.083
MYB.ph3: 0.0714
MafB: 0.066
Gfi: 0.0658
GATA3: 0.0634
Pbx: 0.0396
PBF: 0.0338
FOXL1: 0.0332
ID1: 0.0307
Dof2: 0.0272
Gata1: 0.0267
SRY: 0.0242
MNB1A: 0.023
Pax4: 0.0224
FOXC1: 0.0223
cEBP: 0.0219
Sox5: 0.0214
ARR10: 0.021
YY1: 0.0205
HAND1-TCF3: 0.0172
MA0021: 0.017
SP1: 0.0158
Broad-complex_1: 0.013
Broad-complex_4: 0.012
SOX9: 0.0114
RUSH1-alfa: 0.0114
GATA2: 0.0109
Pax2: 0.0104
Hunchback: 0.0102
Macho-1: 0.0098
GAMYB: 0.0096
Snail: 0.00937
Sox17: 0.00934
En1: 0.00933
ESR1: 0.00927
Broad-complex_2: 0.00906
Klf4: 0.00903
SU_h: 0.00873
Foxd3: 0.00857
Agamous: 0.00748
c-ETS: 0.007
HMG-1: 0.00687
deltaEF1: 0.0068
Foxq1: 0.00662
Broad-complex_3: 0.00657
Athb-1: 0.00656
NR3C1: 0.0065
Ubx: 0.00647
ZNF42_5-13: 0.00604
Bapx1: 0.00594
HMG-IY: 0.00585
TBP: 0.00496
Staf: 0.00491
Dorsal_2: 0.00452
SPIB: 0.00446
TCF1: 0.00443
AGL3: 0.0043
HNF4: 0.0043
TAL1-TCF3: 0.00421
FOXD1: 0.00401
SPI1: 0.00397
CF2-II: 0.00357
Nkx2-5: 0.00356
Pax5: 0.0035
TCF11-MafG: 0.00333
Foxa2: 0.00312
FOXI1: 0.0031
E2F1: 0.00271
Dorsal_1: 0.00257
Fos: 0.00256
Arnt-Ahr: 0.00246
ATHB5: 0.0024
RXR-VDR: 0.00203
NR2F1: 0.00193
Chop-cEBP: 0.00185
REL: 0.00152
Prrx2: 0.00148
GABPA: 0.00145
Myb: 0.00139
ELK1: 0.00138
CREB1: 0.00134
RUNX1: 0.00132
SQUA: 0.00112
TEAD: 0.00102
ABI4: 0.0009
E74A: 0.00086
HLF: 0.00083
Myf: 0.000775
Spz1: 0.000714
MYC-MAX: 0.000653
Hox11-CTF1: 0.000602
FOXF2: 0.000585
MAX: 0.000545
NHLH1: 0.000499
Mycn: 0.000466
SRF: 0.00046
Arnt: 0.000458
RORA: 0.000438
TFAP2A: 0.000398
RELA: 0.000379
CFI-USP: 0.000353
Pax6: 0.000319
IRF1: 0.000286
IRF2: 0.000279
USF1: 0.000258
bZIP911: 0.000237
RREB1: 0.000236
NFIL3: 0.000215
MEF2A: 0.000197
Evi1: 0.000139
RORA1: 0.000129
ELK4: 0.0001
NF-kappaB: 9.41e-05
Roaz: 7.09e-05
NFKB1: 5.92e-05
T: 4.54e-05
bZIP910: 3.43e-05
PPARG: 1.71e-05
NR1H2-RXR: 8.97e-06
PPARG-RXRA: 3.08e-06
TP53: 2.6e-06
ATGCACCAATCAGCAATCTGTGTCTAGCCAATCTGGTGGGGACTTGGAGAACTTTTgtgtctagctaaaggattgtaaATGCACCAATCAGCACtctgtgtctagctaaaggtttgtaaATGCACCAATCAGCACtctgtcaaaACGGACCAATCAGCTCtctgtaaaACAGACCAATCAGCTCtctgtaaaATGGACCAATCAGCTCtccataaaATGGACCAATCAGCAG
NF-Y	707	722	+	10.6	atgcaccaatcagcaa
Pbx	709	720	+	6.35	gcaccaatcagc
Gfi	712	721	+	6.41	ccaatcagca
MafB	713	720	-	6.16	gctgattg
Gfi	719	728	+	6.2	gcaatctgtg
NF-Y	729	744	+	6.85	tctagccaatctggtg
Ar	741	762	-	8.13	aaaagttctccaagtccccacc
ZNF42_1-4	743	748	+	7.08	tgggga
NF-Y	785	800	+	10	atgcaccaatcagcac
NF-Y	826	841	+	9.7	atgcaccaatcagcac
NF-Y	851	866	+	10.7	acggaccaatcagctc
NF-Y	875	890	+	8.67	acagaccaatcagctc
NF-Y	899	914	+	10.7	atggaccaatcagctc
NF-Y	923	938	+	10.4	atggaccaatcagcag

>NM_182908 (1000 bp)

CLUSTER 1
Location: 707 to 938
Score: 7.32
NF-Y: 10.6
Ar: 0.321
ZNF42_1-4: 0.083
MYB.ph3: 0.0714
MafB: 0.066
Gfi: 0.0658
GATA3: 0.0634
Pbx: 0.0396
PBF: 0.0338
FOXL1: 0.0332
ID1: 0.0307
Dof2: 0.0272
Gata1: 0.0267
SRY: 0.0242
MNB1A: 0.023
Pax4: 0.0224
FOXC1: 0.0223
cEBP: 0.0219
Sox5: 0.0214
ARR10: 0.021
YY1: 0.0205
HAND1-TCF3: 0.0172
MA0021: 0.017
SP1: 0.0158
Broad-complex_1: 0.013
Broad-complex_4: 0.012
SOX9: 0.0114
RUSH1-alfa: 0.0114
GATA2: 0.0109
Pax2: 0.0104
Hunchback: 0.0102
Macho-1: 0.0098
GAMYB: 0.0096
Snail: 0.00937
Sox17: 0.00934
En1: 0.00933
ESR1: 0.00927
Broad-complex_2: 0.00906
Klf4: 0.00903
SU_h: 0.00873
Foxd3: 0.00857
Agamous: 0.00748
c-ETS: 0.007
HMG-1: 0.00687
deltaEF1: 0.0068
Foxq1: 0.00662
Broad-complex_3: 0.00657
Athb-1: 0.00656
NR3C1: 0.0065
Ubx: 0.00647
ZNF42_5-13: 0.00604
Bapx1: 0.00594
HMG-IY: 0.00585
TBP: 0.00496
Staf: 0.00491
Dorsal_2: 0.00452
SPIB: 0.00446
TCF1: 0.00443
AGL3: 0.0043
HNF4: 0.0043
TAL1-TCF3: 0.00421
FOXD1: 0.00401
SPI1: 0.00397
CF2-II: 0.00357
Nkx2-5: 0.00356
Pax5: 0.0035
TCF11-MafG: 0.00333
Foxa2: 0.00312
FOXI1: 0.0031
E2F1: 0.00271
Dorsal_1: 0.00257
Fos: 0.00256
Arnt-Ahr: 0.00246
ATHB5: 0.0024
RXR-VDR: 0.00203
NR2F1: 0.00193
Chop-cEBP: 0.00185
REL: 0.00152
Prrx2: 0.00148
GABPA: 0.00145
Myb: 0.00139
ELK1: 0.00138
CREB1: 0.00134
RUNX1: 0.00132
SQUA: 0.00112
TEAD: 0.00102
ABI4: 0.0009
E74A: 0.00086
HLF: 0.00083
Myf: 0.000775
Spz1: 0.000714
MYC-MAX: 0.000653
Hox11-CTF1: 0.000602
FOXF2: 0.000585
MAX: 0.000545
NHLH1: 0.000499
Mycn: 0.000466
SRF: 0.00046
Arnt: 0.000458
RORA: 0.000438
TFAP2A: 0.000398
RELA: 0.000379
CFI-USP: 0.000353
Pax6: 0.000319
IRF1: 0.000286
IRF2: 0.000279
USF1: 0.000258
bZIP911: 0.000237
RREB1: 0.000236
NFIL3: 0.000215
MEF2A: 0.000197
Evi1: 0.000139
RORA1: 0.000129
ELK4: 0.0001
NF-kappaB: 9.41e-05
Roaz: 7.09e-05
NFKB1: 5.92e-05
T: 4.54e-05
bZIP910: 3.43e-05
PPARG: 1.71e-05
NR1H2-RXR: 8.97e-06
PPARG-RXRA: 3.08e-06
TP53: 2.6e-06
ATGCACCAATCAGCAATCTGTGTCTAGCCAATCTGGTGGGGACTTGGAGAACTTTTgtgtctagctaaaggattgtaaATGCACCAATCAGCACtctgtgtctagctaaaggtttgtaaATGCACCAATCAGCACtctgtcaaaACGGACCAATCAGCTCtctgtaaaACAGACCAATCAGCTCtctgtaaaATGGACCAATCAGCTCtccataaaATGGACCAATCAGCAG
NF-Y	707	722	+	10.6	atgcaccaatcagcaa
Pbx	709	720	+	6.35	gcaccaatcagc
Gfi	712	721	+	6.41	ccaatcagca
MafB	713	720	-	6.16	gctgattg
Gfi	719	728	+	6.2	gcaatctgtg
NF-Y	729	744	+	6.85	tctagccaatctggtg
Ar	741	762	-	8.13	aaaagttctccaagtccccacc
ZNF42_1-4	743	748	+	7.08	tgggga
NF-Y	785	800	+	10	atgcaccaatcagcac
NF-Y	826	841	+	9.7	atgcaccaatcagcac
NF-Y	851	866	+	10.7	acggaccaatcagctc
NF-Y	875	890	+	8.67	acagaccaatcagctc
NF-Y	899	914	+	10.7	atggaccaatcagctc
NF-Y	923	938	+	10.4	atggaccaatcagcag

>NM_001069 (1000 bp)

CLUSTER 1
Location: 941 to 989
Score: 5.97
TBP: 2.77
bZIP910: 0.735
CREB1: 0.35
TCF11-MafG: 0.0604
HLF: 0.0418
ZNF42_1-4: 0.0163
Dorsal_1: 0.00964
Hunchback: 0.00757
Pax2: 0.00582
NFKB1: 0.00564
RXR-VDR: 0.00542
NFIL3: 0.00508
GAMYB: 0.0044
Broad-complex_2: 0.0043
Broad-complex_4: 0.00377
SP1: 0.00335
Ubx: 0.0025
MNB1A: 0.00212
FOXD1: 0.00199
Broad-complex_3: 0.00183
YY1: 0.00177
FOXL1: 0.00156
MafB: 0.00133
Macho-1: 0.0013
RUSH1-alfa: 0.00123
HMG-1: 0.00123
Dof2: 0.0012
bZIP911: 0.00114
TFAP2A: 0.00113
HNF4: 0.000881
PBF: 0.000858
SPI1: 0.000841
En1: 0.000811
GATA2: 0.000765
Nkx2-5: 0.000736
CF2-II: 0.000654
SRY: 0.000638
REL: 0.000608
ELK1: 0.000557
ID1: 0.000524
CFI-USP: 0.000494
ESR1: 0.000463
Foxq1: 0.000422
Snail: 0.000419
AGL3: 0.000384
Spz1: 0.000382
Klf4: 0.000374
ABI4: 0.00037
SOX9: 0.000322
deltaEF1: 0.000317
cEBP: 0.000272
FOXC1: 0.000265
MAX: 0.000258
RORA: 0.000255
GABPA: 0.00023
c-ETS: 0.000221
Dorsal_2: 0.00022
MA0021: 0.000192
Gata1: 0.000176
E74A: 0.000165
Broad-complex_1: 0.000157
HAND1-TCF3: 0.000156
Arnt-Ahr: 0.000141
SQUA: 0.000137
Evi1: 0.000136
Chop-cEBP: 0.000129
GATA3: 0.000121
NF-kappaB: 0.000109
Pax5: 0.000107
ZNF42_5-13: 9.7e-05
ARR10: 7.99e-05
USF1: 7.87e-05
Athb-1: 7.8e-05
Mycn: 6.58e-05
Arnt: 6.02e-05
TCF1: 5.65e-05
MYB.ph3: 5.55e-05
RELA: 4.72e-05
FOXF2: 3.93e-05
Prrx2: 3.85e-05
NR2F1: 3.83e-05
E2F1: 3.39e-05
Bapx1: 3.13e-05
Myb: 2.89e-05
RUNX1: 2.82e-05
ELK4: 2.7e-05
Foxa2: 2.51e-05
NR3C1: 2.39e-05
FOXI1: 2.37e-05
Fos: 2.37e-05
Gfi: 1.88e-05
SPIB: 1.7e-05
MYC-MAX: 1.56e-05
RORA1: 1.5e-05
TP53: 1.48e-05
Foxd3: 1.47e-05
Sox5: 1.42e-05
Agamous: 1.35e-05
HMG-IY: 1.11e-05
Pbx: 9.21e-06
Sox17: 8.91e-06
Staf: 5.86e-06
Pax4: 5.17e-06
IRF1: 4.88e-06
SU_h: 4.84e-06
SRF: 4.51e-06
MEF2A: 4.37e-06
TEAD: 3.39e-06
Hox11-CTF1: 2.37e-06
T: 2.35e-06
PPARG: 1.4e-06
NR1H2-RXR: 1.17e-06
Pax6: 1.06e-06
ATHB5: 8.32e-07
Myf: 8.3e-07
PPARG-RXRA: 4.07e-07
NHLH1: 3.58e-07
TAL1-TCF3: 2.6e-07
Ar: 1.55e-07
RREB1: 1.28e-07
Roaz: 1.12e-07
NF-Y: 8.32e-08
IRF2: 4.39e-08
CGTCATGACGTCACCGGGcagggcGGGTCCCCGGGTATAAAAGACCGAG
CREB1	941	952	+	9.92	cgtcatgacgtc
TCF11-MafG	942	947	-	8.05	catgac
HLF	944	955	-	8.02	ggtgacgtcatg
TCF11-MafG	944	949	+	7.24	catgac
bZIP910	945	951	+	10.7	atgacgt
CREB1	947	958	-	8.33	cccggtgacgtc
bZIP910	948	954	-	7.79	gtgacgt
RXR-VDR	965	979	+	7.93	gggtccccgggtata
Hunchback	973	982	+	7.94	gggtataaaa
Broad-complex_2	975	982	-	8.1	ttttatac
Broad-complex_4	975	985	+	7.8	gtataaaagac
CF2-II	975	984	+	6.15	gtataaaaga
FOXD1	975	982	+	7.33	gtataaaa
HMG-1	975	983	-	6.55	cttttatac
Hunchback	975	984	+	7.8	gtataaaaga
TBP	975	989	+	13.4	gtataaaagaccgag
HNF4	975	987	+	6.02	gtataaaagaccg
Broad-complex_3	976	986	+	7.07	tataaaagacc
Dorsal_1	976	987	-	8.81	cggtcttttata
FOXL1	976	983	-	6.73	cttttata
GAMYB	976	985	+	8.09	tataaaagac
RUSH1-alfa	976	983	-	6.43	cttttata
Nkx2-5	977	983	+	6.21	ataaaag
Dof2	980	985	+	6.5	aaagac
MNB1A	980	984	+	7.12	aaaga
PBF	980	984	+	6.18	aaaga

>NM_007173 (1000 bp)

CLUSTER 1
Location: 115 to 270
Score: 5.33
RREB1: 3.14
Myf: 0.691
SRF: 0.561
Fos: 0.476
TAL1-TCF3: 0.471
Gfi: 0.166
SQUA: 0.161
Agamous: 0.152
AGL3: 0.123
Staf: 0.0865
NFKB1: 0.0789
GAMYB: 0.0672
HMG-1: 0.0604
ZNF42_1-4: 0.0574
SPI1: 0.045
Bapx1: 0.0413
Macho-1: 0.041
Pax2: 0.0387
FOXC1: 0.0383
ZNF42_5-13: 0.0373
Klf4: 0.0326
SP1: 0.0323
deltaEF1: 0.031
Pbx: 0.0295
Spz1: 0.0282
Snail: 0.0267
Pax5: 0.0245
En1: 0.0239
NF-kappaB: 0.0159
HAND1-TCF3: 0.0138
YY1: 0.013
NHLH1: 0.0129
MafB: 0.0111
Arnt-Ahr: 0.0108
Ubx: 0.0103
Gata1: 0.00982
FOXD1: 0.00935
Broad-complex_2: 0.00923
TBP: 0.00878
Dorsal_2: 0.00871
c-ETS: 0.00866
TCF11-MafG: 0.00828
GATA3: 0.00724
Sox17: 0.00667
REL: 0.00636
GATA2: 0.00636
GABPA: 0.00607
RUSH1-alfa: 0.0058
ELK1: 0.00565
RUNX1: 0.00564
Broad-complex_1: 0.00559
Prrx2: 0.00524
HNF4: 0.00524
PBF: 0.00516
Nkx2-5: 0.00509
MNB1A: 0.00506
MA0021: 0.00481
MYC-MAX: 0.0045
ABI4: 0.00407
TFAP2A: 0.00391
ARR10: 0.0036
Dorsal_1: 0.00353
E74A: 0.0034
cEBP: 0.0033
Broad-complex_3: 0.00315
Athb-1: 0.00302
RELA: 0.00301
T: 0.00298
SRY: 0.00294
Dof2: 0.00275
CREB1: 0.00271
ID1: 0.0023
NR3C1: 0.00221
Myb: 0.00211
MAX: 0.0021
NR2F1: 0.00203
SPIB: 0.00197
SOX9: 0.00189
Broad-complex_4: 0.00184
FOXL1: 0.00168
Arnt: 0.00145
Pax4: 0.00144
Mycn: 0.00131
TEAD: 0.0013
Sox5: 0.00123
Foxq1: 0.00121
HMG-IY: 0.00104
ESR1: 0.000999
USF1: 0.00097
E2F1: 0.000967
RXR-VDR: 0.000939
CFI-USP: 0.000856
Hox11-CTF1: 0.000754
RORA: 0.000722
MYB.ph3: 0.000676
HLF: 0.000658
Hunchback: 0.000578
FOXI1: 0.000533
ELK4: 0.00053
IRF1: 0.000452
RORA1: 0.000345
bZIP910: 0.000339
Pax6: 0.000296
SU_h: 0.000255
Foxa2: 0.000254
Chop-cEBP: 0.000232
PPARG: 0.000207
bZIP911: 0.000191
NF-Y: 0.000189
FOXF2: 0.00018
Ar: 0.000158
Roaz: 0.000157
NFIL3: 0.000155
ATHB5: 0.000125
Evi1: 0.000125
MEF2A: 0.000119
TCF1: 4.21e-05
Foxd3: 1.8e-05
CF2-II: 1.49e-05
TP53: 1.11e-05
IRF2: 5.2e-06
NR1H2-RXR: 1.65e-06
PPARG-RXRA: 1.1e-06
GACCTTAAATGGCAAGgtctccaGCCTGGTTAGGaGAGGACTCCCCgcacacccccctaccctggCCCCCAACCACCACCACCAAGATAACGACCgcTTGGAGTGATTCAGGGAAGTAGGCCCActggacaaggaggtggctCCACCAGCTGGTGC
SRF	115	126	+	9.52	gaccttaaatgg
Agamous	116	126	-	6.15	ccatttaaggt
AGL3	117	126	+	7.92	ccttaaatgg
AGL3	117	126	-	7.05	ccatttaagg
Agamous	117	127	+	7.38	ccttaaatggc
SQUA	117	130	+	8.45	ccttaaatggcaag
Agamous	138	148	-	6.5	cctaaccaggc
NFKB1	150	160	-	6.3	ggggagtcctc
RREB1	180	199	+	11.8	cccccaaccaccaccaccaa
GAMYB	200	209	+	6.2	gataacgacc
Pbx	212	223	-	6.65	gaatcactccaa
Staf	213	232	-	7.49	tacttccctgaatcactcca
Bapx1	213	221	+	6.05	tggagtgat
Gfi	215	224	-	8.39	tgaatcactc
Pax2	215	222	-	6.84	aatcactc
Fos	217	224	+	9.29	gtgattca
Fos	218	225	-	6.69	ctgaatca
Pax5	219	238	+	6.27	gattcagggaagtaggccca
SPI1	225	230	+	6.06	gggaag
TAL1-TCF3	257	268	+	9.38	ccaccagctggt
Myf	258	269	+	9.62	caccagctggtg
Myf	258	269	-	9.62	caccagctggtg
TAL1-TCF3	259	270	-	9.3	gcaccagctggt

>NM_014297 (1000 bp)

CLUSTER 1
Location: 478 to 559
Score: 5.1
Hox11-CTF1: 3.69
CF2-II: 2.47
FOXL1: 0.132
FOXI1: 0.0581
MEF2A: 0.0478
TBP: 0.0354
Macho-1: 0.0128
Foxa2: 0.0123
GAMYB: 0.00856
Broad-complex_2: 0.00818
Foxd3: 0.00667
deltaEF1: 0.0065
AGL3: 0.00646
Snail: 0.00512
SQUA: 0.00498
GATA2: 0.00487
Broad-complex_4: 0.00482
RUSH1-alfa: 0.00478
Ubx: 0.00446
Arnt-Ahr: 0.00412
GATA3: 0.00372
Broad-complex_3: 0.00349
MYC-MAX: 0.00299
Mycn: 0.00299
Pax2: 0.00269
FOXD1: 0.00259
Arnt: 0.00227
ZNF42_5-13: 0.00202
Foxq1: 0.00182
SP1: 0.00176
c-ETS: 0.00175
SRY: 0.00145
Gata1: 0.00138
ELK1: 0.00124
MAX: 0.00121
FOXC1: 0.00118
HAND1-TCF3: 0.00108
ARR10: 0.00104
MA0021: 0.00102
cEBP: 0.000973
Broad-complex_1: 0.00096
Myb: 0.000908
Nkx2-5: 0.000856
Klf4: 0.000811
ELK4: 0.000747
YY1: 0.000739
MNB1A: 0.000728
USF1: 0.00072
PBF: 0.000719
TCF11-MafG: 0.000673
Prrx2: 0.000544
MYB.ph3: 0.00054
MafB: 0.000534
HMG-1: 0.000457
Sox17: 0.000435
Dof2: 0.00043
ZNF42_1-4: 0.000429
En1: 0.000372
Sox5: 0.000368
Hunchback: 0.000255
GABPA: 0.000246
HNF4: 0.000244
Gfi: 0.000234
Bapx1: 0.000231
NFIL3: 0.000228
HMG-IY: 0.00019
ABI4: 0.000187
E74A: 0.00018
bZIP910: 0.000171
FOXF2: 0.000161
TCF1: 0.000159
REL: 0.000156
Athb-1: 0.000133
ID1: 0.000131
SU_h: 0.000127
SOX9: 0.000126
E2F1: 0.0001
HLF: 7.38e-05
SPI1: 6.96e-05
TEAD: 6.74e-05
Chop-cEBP: 6.74e-05
RORA: 6.37e-05
NR2F1: 6.35e-05
Pbx: 6.18e-05
NR3C1: 6.1e-05
Agamous: 6.05e-05
Spz1: 5.18e-05
CREB1: 4.28e-05
Fos: 2.87e-05
RUNX1: 2.61e-05
SPIB: 2.57e-05
TFAP2A: 2.19e-05
Pax5: 2.1e-05
bZIP911: 2.09e-05
Dorsal_1: 1.97e-05
ESR1: 1.54e-05
TAL1-TCF3: 1.48e-05
RREB1: 1.17e-05
NHLH1: 1.14e-05
T: 1.11e-05
Pax6: 1.08e-05
NF-kappaB: 1.04e-05
Pax4: 8.94e-06
Dorsal_2: 8.31e-06
CFI-USP: 7.25e-06
RELA: 6.41e-06
NFKB1: 3.2e-06
RORA1: 3e-06
Myf: 2.45e-06
IRF1: 2.27e-06
Evi1: 1.69e-06
ATHB5: 1.32e-06
SRF: 1.26e-06
RXR-VDR: 8.92e-07
Staf: 8.83e-07
IRF2: 1.88e-07
Roaz: 1.41e-07
NR1H2-RXR: 6.8e-08
NF-Y: 4.65e-08
Ar: 2.42e-08
TP53: 1.25e-08
PPARG-RXRA: 6.25e-09
PPARG: 6.03e-09
GTATATATATATATGTATATAAATATATATATAGatataaATATATATATATAAaatgtcgggtgtgGTGGCAACGTGCCAT
CF2-II	478	487	+	8.29	gtatatatat
CF2-II	478	487	-	8.02	atatatatac
CF2-II	480	489	+	7.48	atatatatat
CF2-II	480	489	-	7.48	atatatatat
CF2-II	482	491	+	7.48	atatatatat
CF2-II	482	491	-	7.48	atatatatat
CF2-II	484	493	+	6.78	atatatatgt
CF2-II	486	495	+	7.6	atatatgtat
FOXI1	494	505	-	6.07	atatatttatat
CF2-II	500	509	+	7.56	atatatatat
CF2-II	500	509	-	7.56	atatatatat
CF2-II	502	511	+	7.35	atatatatag
CF2-II	502	511	-	7.17	ctatatatat
CF2-II	518	527	+	7.45	atatatatat
CF2-II	518	527	-	7.45	atatatatat
CF2-II	520	529	+	7.45	atatatatat
CF2-II	520	529	-	7.45	atatatatat
CF2-II	522	531	+	6.79	atatatataa
Hox11-CTF1	545	558	-	11.5	tggcacgttgccac
Hox11-CTF1	546	559	+	12.5	tggcaacgtgccat
MYC-MAX	547	557	+	6.13	ggcaacgtgcc
MYC-MAX	548	558	-	6.52	tggcacgttgc
Arnt	550	555	+	6.42	aacgtg

>NM_153322 (1000 bp)

CLUSTER 1
Location: 593 to 790
Score: 5.02
RREB1: 0.512
Dorsal_2: 0.412
IRF1: 0.405
NF-kappaB: 0.283
NR2F1: 0.224
PPARG-RXRA: 0.209
RELA: 0.189
NFKB1: 0.174
ESR1: 0.148
HNF4: 0.14
REL: 0.132
TAL1-TCF3: 0.131
CFI-USP: 0.113
IRF2: 0.109
HMG-IY: 0.0958
Dorsal_1: 0.0799
TEAD: 0.0766
Ar: 0.0757
HAND1-TCF3: 0.0756
ZNF42_5-13: 0.0721
SPI1: 0.0661
Pax4: 0.0658
deltaEF1: 0.064
NR3C1: 0.061
SPIB: 0.0583
Klf4: 0.0578
Macho-1: 0.0556
SU_h: 0.0534
Arnt: 0.0516
SRY: 0.0513
SP1: 0.0477
Broad-complex_3: 0.0436
c-ETS: 0.0416
MNB1A: 0.0411
Arnt-Ahr: 0.0398
Broad-complex_1: 0.0394
ID1: 0.0346
PBF: 0.0344
Dof2: 0.0334
Broad-complex_4: 0.033
En1: 0.0305
MYC-MAX: 0.0285
HMG-1: 0.0281
ZNF42_1-4: 0.0268
Snail: 0.0268
E74A: 0.0263
GAMYB: 0.0258
TFAP2A: 0.0257
Hunchback: 0.0234
GABPA: 0.0229
Foxa2: 0.0222
ABI4: 0.0208
MA0021: 0.0205
Pax2: 0.02
ELK1: 0.0174
YY1: 0.0161
RUSH1-alfa: 0.0157
MYB.ph3: 0.0153
Gata1: 0.0135
MAX: 0.0135
Broad-complex_2: 0.0133
FOXD1: 0.0133
RUNX1: 0.0117
GATA2: 0.0116
Spz1: 0.0116
ARR10: 0.0113
Pax5: 0.0111
MafB: 0.0106
Myf: 0.01
TCF11-MafG: 0.0098
FOXI1: 0.00964
Mycn: 0.00946
FOXL1: 0.00942
RXR-VDR: 0.0091
USF1: 0.00908
Gfi: 0.00887
Myb: 0.00829
Chop-cEBP: 0.0082
Bapx1: 0.00818
Sox5: 0.00812
Foxd3: 0.00689
Nkx2-5: 0.00667
cEBP: 0.00649
GATA3: 0.00644
RORA: 0.00606
SOX9: 0.00579
Sox17: 0.00557
Ubx: 0.00534
FOXC1: 0.00449
HLF: 0.00417
NR1H2-RXR: 0.00376
ELK4: 0.0032
Foxq1: 0.003
Staf: 0.00282
E2F1: 0.00277
PPARG: 0.00258
bZIP910: 0.00242
CREB1: 0.0021
SQUA: 0.00193
TBP: 0.00185
Agamous: 0.00172
Prrx2: 0.00148
FOXF2: 0.0014
CF2-II: 0.00125
bZIP911: 0.00124
Athb-1: 0.00118
Evi1: 0.00066
Fos: 0.000655
AGL3: 0.000576
Pbx: 0.000534
TCF1: 0.00053
Pax6: 0.000522
Hox11-CTF1: 0.00048
Roaz: 0.00045
NHLH1: 0.000318
NFIL3: 0.000258
T: 0.000218
NF-Y: 0.000104
SRF: 7.46e-05
MEF2A: 3.09e-05
TP53: 2.44e-05
ATHB5: 1.26e-05
RORA1: 8.64e-06
AGGGGAATTCACCATCtgaaccGGGGTCTCGGAGAACGTGACCTCTCACCTTCCAGGGaggtcgccGGGAGGTGCTTGGGGTGGGTggaagcgtgcagTGGCCTCTGCTCATatTTTCTGGAAACCCCTCCgttccctgggtggttttagacgtgcgaaccgcttgtTTTGTTTCCAAAAGCAAAAGATGTTCCGTTG
ZNF42_1-4	593	598	+	6.22	agggga
SPIB	593	599	+	7.26	aggggaa
Dorsal_2	594	603	+	8.84	ggggaattca
REL	594	603	+	7.5	ggggaattca
NFKB1	594	604	+	7.49	ggggaattcac
NFKB1	594	604	-	7.22	gtgaattcccc
RELA	594	603	+	6.07	ggggaattca
NF-kappaB	595	604	+	9.02	gggaattcac
NF-kappaB	595	604	-	7.09	gtgaattccc
NFKB1	595	605	+	7.07	gggaattcacc
NFKB1	595	605	-	7.28	ggtgaattccc
RELA	595	604	+	6.3	gggaattcac
RELA	595	604	-	7.66	gtgaattccc
Dorsal_2	596	605	-	7.03	ggtgaattcc
REL	596	605	-	7.16	ggtgaattcc
YY1	603	608	+	6.12	accatc
CFI-USP	615	624	+	6.09	ggggtctcgg
ESR1	615	632	-	6.77	cacgttctccgagacccc
ESR1	620	637	+	7.38	ctcggagaacgtgacctc
MYC-MAX	624	634	+	6.25	gagaacgtgac
Arnt	627	632	+	6.76	aacgtg
CFI-USP	628	637	-	7.08	gaggtcacgt
PPARG-RXRA	628	647	-	8.31	tggaaggtgagaggtcacgt
NR2F1	631	644	+	7.88	tgacctctcacctt
HNF4	631	643	-	7.24	aggtgagaggtca
TEAD	639	650	+	6.92	caccttccaggg
deltaEF1	639	644	+	6.62	cacctt
RREB1	659	678	-	8.35	acccaccccaagcacctccc
NR2F1	691	704	+	6.88	tggcctctgctcat
HNF4	691	703	-	6.59	tgagcagaggcca
HAND1-TCF3	707	716	+	7.31	tttctggaaa
Dorsal_1	711	722	-	6.21	gaggggtttcca
Dorsal_2	711	720	-	7.96	ggggtttcca
Dorsal_2	712	721	-	6.12	aggggtttcc
REL	712	721	-	6.81	aggggtttcc
RELA	712	721	-	7.53	aggggtttcc
ZNF42_5-13	714	723	-	7.04	ggaggggttt
Broad-complex_4	760	770	-	7.32	ttggaaacaaa
SRY	760	768	-	6.13	ggaaacaaa
SQUA	763	776	-	6.03	ttgcttttggaaac
HMG-IY	764	779	+	6.07	tttccaaaagcaaaag
HMG-IY	765	780	+	10.5	ttccaaaagcaaaaga
Broad-complex_1	766	779	+	9.52	tccaaaagcaaaag
Agamous	767	777	+	6.02	ccaaaagcaaa
Broad-complex_4	767	777	+	6.62	ccaaaagcaaa
ID1	767	778	-	9.02	ttttgcttttgg
Broad-complex_1	768	781	+	6.51	caaaagcaaaagat
IRF2	768	785	+	10.6	caaaagcaaaagatgttc
ID1	768	779	-	8.37	cttttgcttttg
Ar	769	790	+	10.1	aaaagcaaaagatgttccgttg
Broad-complex_3	769	779	+	7.82	aaaagcaaaag
Gfi	769	778	+	6.87	aaaagcaaaa
Klf4	769	778	+	7.66	aaaagcaaaa
IRF1	769	780	+	11.8	aaaagcaaaaga
SRY	769	777	+	6.45	aaaagcaaa
Broad-complex_3	770	780	+	7.3	aaagcaaaaga
Dof2	770	775	+	8.7	aaagca
MA0021	770	775	+	8.23	aaagca
Klf4	770	779	+	9.48	aaagcaaaag
MNB1A	770	774	+	7.63	aaagc
PBF	770	774	+	7.59	aaagc
NR3C1	770	787	-	9.71	cggaacatcttttgcttt
Broad-complex_4	771	781	+	7.43	aagcaaaagat
Foxd3	771	782	-	6.46	catcttttgctt
HMG-1	771	779	-	7.21	cttttgctt
Foxa2	771	782	-	8.02	catcttttgctt
Myf	771	782	+	7.59	aagcaaaagatg
NR3C1	771	788	+	7.8	aagcaaaagatgttccgt
TAL1-TCF3	773	784	+	6.09	gcaaaagatgtt
TAL1-TCF3	775	786	-	10.1	ggaacatctttt
Dof2	776	781	+	6.97	aaagat
MNB1A	776	780	+	7.18	aaaga
PBF	776	780	+	6.24	aaaga

>NM_153449 (1000 bp)

CLUSTER 1
Location: 163 to 720
Score: 5.23
MYB.ph3: 1.74
Foxd3: 1.68
ESR1: 1.05
Chop-cEBP: 0.72
MEF2A: 0.624
FOXI1: 0.528
Agamous: 0.428
Spz1: 0.414
HMG-IY: 0.287
Broad-complex_2: 0.276
TFAP2A: 0.261
AGL3: 0.223
HMG-1: 0.218
REL: 0.215
ARR10: 0.211
Snail: 0.204
ABI4: 0.198
MNB1A: 0.181
Pax4: 0.171
HLF: 0.17
Myb: 0.161
MA0021: 0.152
SP1: 0.148
Staf: 0.14
GATA3: 0.139
Macho-1: 0.137
Dof2: 0.133
PBF: 0.131
Broad-complex_1: 0.127
IRF2: 0.126
Foxa2: 0.125
GATA2: 0.121
En1: 0.111
Broad-complex_4: 0.109
Dorsal_2: 0.108
RUSH1-alfa: 0.107
NF-kappaB: 0.104
ELK1: 0.0979
Prrx2: 0.0979
deltaEF1: 0.0958
Dorsal_1: 0.0923
NR2F1: 0.0905
Fos: 0.0899
c-ETS: 0.089
Gata1: 0.0888
ZNF42_5-13: 0.0874
Hunchback: 0.0852
ZNF42_1-4: 0.0847
Ubx: 0.0823
NR3C1: 0.0779
NHLH1: 0.0778
SQUA: 0.0759
RORA: 0.0702
E2F1: 0.0672
FOXL1: 0.064
MafB: 0.0582
YY1: 0.0577
SPI1: 0.0569
Gfi: 0.0565
ID1: 0.0522
Pax2: 0.0516
CFI-USP: 0.0516
cEBP: 0.0497
FOXC1: 0.0488
Nkx2-5: 0.0484
Athb-1: 0.048
RUNX1: 0.0476
HNF4: 0.0462
RELA: 0.0422
SRY: 0.0414
Broad-complex_3: 0.0403
GAMYB: 0.0403
Klf4: 0.0402
Bapx1: 0.0384
E74A: 0.0381
NFKB1: 0.0376
SOX9: 0.0374
Arnt-Ahr: 0.0369
Myf: 0.0353
Pax5: 0.0333
HAND1-TCF3: 0.0318
Roaz: 0.0304
TCF11-MafG: 0.0302
SPIB: 0.0281
CF2-II: 0.0279
GABPA: 0.0247
TCF1: 0.0227
Sox5: 0.0224
IRF1: 0.022
Evi1: 0.0219
FOXD1: 0.0213
Foxq1: 0.0212
T: 0.0176
TEAD: 0.0164
Arnt: 0.016
Mycn: 0.0157
Sox17: 0.0149
SU_h: 0.0145
ELK4: 0.014
MYC-MAX: 0.013
RORA1: 0.0121
MAX: 0.012
TBP: 0.00844
USF1: 0.00789
RXR-VDR: 0.00602
bZIP910: 0.00586
CREB1: 0.00557
Pbx: 0.00535
FOXF2: 0.00421
PPARG: 0.0034
NFIL3: 0.0034
PPARG-RXRA: 0.00339
Pax6: 0.00315
Ar: 0.00267
ATHB5: 0.00267
NF-Y: 0.00219
RREB1: 0.00217
NR1H2-RXR: 0.00194
TAL1-TCF3: 0.00152
Hox11-CTF1: 0.0015
TP53: 0.000408
SRF: 0.000271
bZIP911: 0.000173
GAGAACGACCGCGGGGCTTTTCatCCAAAAAGAGCtcctgagtctgaaaTAACTGTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTtttGAGACGGAATcttgaGCTGTTACCCAGGCTGGAGTGCAATGGCGGAGTTCAGCTCACTGTAACCTCCGCCTCCtgggttcaagcgattctCCTGTCTCAGCCTCCCAAGCAGTTGGGActatagGAGCGCACCGccaagcccCCTAATTTTGTTATTTTTAGTAAAGACTgGGTTTCGCCATGttggccaggctggtctcGAACCCCTGACCTCAAGttatccgctctcctcggcctcCAAAAGTGCTAGGATTACAGGTGTGAGCCAccgtgcgcggcccgAAATAACTCTTTaCAGGATCTcgcccTGGGCCTTCCcagcccagccggcccgcccgcggggatagcccgggcaCTATCTccctgctgcaggcggtGAGGGGCTCGGGTATCTTTGAAAATAGATACGTTCACACCCTCCTAACGGCggcgccaagggtggtgggtcCCAAAACTGTTT
HMG-1	163	171	-	7.46	gtcgttctc
TFAP2A	171	179	-	7.41	gccccgcgg
NF-kappaB	175	184	+	6.19	ggggcttttc
REL	175	184	+	7.02	ggggcttttc
AGL3	187	196	+	8.18	ccaaaaagag
Agamous	187	197	+	8.71	ccaaaaagagc
Hunchback	187	196	+	6.55	ccaaaaagag
MEF2A	187	196	-	6.2	ctctttttgg
MYB.ph3	212	220	+	7.76	taactgttt
Foxd3	218	229	+	7.26	ttttgtttgttt
FOXI1	218	229	+	7.16	ttttgtttgttt
Foxd3	222	233	+	8.72	gtttgtttgttt
FOXI1	222	233	+	7.67	gtttgtttgttt
Foxd3	226	237	+	8.62	gtttgtttgttt
FOXI1	226	237	+	7.57	gtttgtttgttt
Foxd3	230	241	+	8.46	gtttgtttgttt
FOXI1	230	241	+	7.4	gtttgtttgttt
Foxd3	234	245	+	8.35	gtttgtttgttt
FOXI1	234	245	+	7.3	gtttgtttgttt
Foxd3	238	249	+	8.29	gtttgtttgttt
FOXI1	238	249	+	7.24	gtttgtttgttt
Foxd3	242	253	+	8.38	gtttgtttgttt
FOXI1	242	253	+	7.32	gtttgtttgttt
Foxd3	246	257	+	8.34	gtttgtttgttt
FOXI1	246	257	+	7.29	gtttgtttgttt
ELK1	261	270	+	6.21	gagacggaat
Spz1	276	286	-	8.05	tgggtaacagc
Staf	278	297	+	6.78	tgttacccaggctggagtgc
Chop-cEBP	292	303	+	9.03	gagtgcaatggc
NR2F1	298	311	-	6.06	tgaactccgccatt
ESR1	309	326	+	9.43	tcagctcactgtaacctc
ESR1	310	327	-	6.25	ggaggttacagtgagctg
ZNF42_5-13	324	333	-	6.51	ggaggcggag
Staf	351	370	+	6.6	cctgtctcagcctcccaagc
NHLH1	367	378	-	6.52	tcccaactgctt
Myb	368	375	+	7.24	agcagttg
ABI4	385	394	-	6.95	cggtgcgctc
Agamous	403	413	+	6.45	cctaattttgt
Prrx2	405	409	-	6.97	aatta
Broad-complex_1	407	420	-	7.97	aaaaataacaaaat
HMG-IY	407	422	-	9.33	ctaaaaataacaaaat
Foxd3	408	419	+	7.52	ttttgttatttt
SQUA	409	422	-	7.08	ctaaaaataacaaa
SRY	409	417	-	6.09	aataacaaa
MEF2A	413	422	+	10.1	ttatttttag
SQUA	413	426	+	7.03	ttatttttagtaaa
Hunchback	415	424	-	6.47	tactaaaaat
Broad-complex_4	420	430	+	6.77	tagtaaagact
MNB1A	424	428	+	6.07	aaaga
HLF	432	443	+	7.15	ggtttcgccatg
Macho-1	461	469	-	6	caggggttc
RORA	468	477	-	6.45	cttgaggtca
IRF2	499	516	+	7.64	caaaagtgctaggattac
MA0021	501	506	+	7.2	aaagtg
MNB1A	501	505	+	6.03	aaagt
PBF	501	505	+	6.45	aaagt
Chop-cEBP	509	520	-	6.2	acctgtaatcct
Spz1	509	519	+	6.79	aggattacagg
Snail	516	521	+	7.94	caggtg
deltaEF1	516	521	-	6.86	cacctg
Fos	521	528	+	6.33	gtgagcca
Broad-complex_2	543	550	-	6.37	agttattt
MYB.ph3	546	554	+	6.99	taactcttt
ARR10	556	563	-	7.11	agatcctg
REL	569	578	+	6.12	tgggccttcc
GATA3	616	621	-	6.81	agatag
Pax4	638	667	-	6.64	tatctattttcaaagatacccgagcccctc
NR2F1	649	662	+	6.02	gtatctttgaaaat
Pax4	649	678	+	6.18	gtatctttgaaaatagatacgttcacaccc
Broad-complex_1	651	664	+	7.75	atctttgaaaatag
Dof2	651	656	-	6.16	aaagat
MNB1A	652	656	-	6.06	aaaga
Broad-complex_4	655	665	+	7.02	ttgaaaataga
HMG-IY	655	670	+	7.36	ttgaaaatagatacgt
MEF2A	655	664	-	7.33	ctattttcaa
SQUA	655	668	+	6.95	ttgaaaatagatac
FOXL1	656	663	+	6.26	tgaaaata
ID1	656	667	-	6.79	tatctattttca
Broad-complex_1	658	671	+	6.24	aaaatagatacgtt
Pax4	658	687	+	7.94	aaaatagatacgttcacaccctcctaacgg
NR3C1	658	675	+	6.3	aaaatagatacgttcaca
Broad-complex_2	659	666	-	9.06	atctattt
CF2-II	659	668	-	6.59	gtatctattt
FOXI1	659	670	-	7.5	acgtatctattt
Foxa2	659	670	-	7.88	acgtatctattt
MYB.ph3	659	667	-	7.26	tatctattt
Pax4	659	688	+	6.22	aaatagatacgttcacaccctcctaacggc
FOXL1	660	667	+	6.98	aatagata
ARR10	663	670	+	7.27	agatacgt
Agamous	709	719	+	7.25	ccaaaactgtt
MYB.ph3	712	720	+	9.8	aaactgttt
MYB.ph3	712	720	-	9.28	aaacagttt

>NM_004040 (1000 bp)

CLUSTER 1
Location: 435 to 977
Score: 6.72
RREB1: 2.23
NF-Y: 1.62
MEF2A: 1.38
Pbx: 1.06
FOXI1: 0.74
Myf: 0.706
SQUA: 0.637
IRF1: 0.551
HMG-IY: 0.34
RUNX1: 0.307
ABI4: 0.26
ZNF42_5-13: 0.252
Klf4: 0.251
AGL3: 0.242
Bapx1: 0.179
Macho-1: 0.169
ZNF42_1-4: 0.156
Broad-complex_1: 0.133
Foxd3: 0.132
TFAP2A: 0.132
GABPA: 0.129
E74A: 0.127
Broad-complex_3: 0.126
Evi1: 0.112
Gfi: 0.112
SPI1: 0.0988
ID1: 0.0932
SP1: 0.0919
Foxq1: 0.085
RELA: 0.0833
FOXL1: 0.0829
MA0021: 0.0818
MNB1A: 0.08
SOX9: 0.0734
SRY: 0.0714
PBF: 0.069
HAND1-TCF3: 0.0682
Arnt-Ahr: 0.0681
Pax5: 0.0674
Dorsal_2: 0.0665
Dorsal_1: 0.0649
TBP: 0.063
Pax4: 0.0625
MafB: 0.0615
Broad-complex_4: 0.0611
Nkx2-5: 0.0566
Hunchback: 0.0554
SU_h: 0.0551
RUSH1-alfa: 0.0537
c-ETS: 0.0514
Pax2: 0.0513
En1: 0.0512
NFKB1: 0.0495
GATA3: 0.0495
Dof2: 0.0463
Arnt: 0.0459
REL: 0.0456
Foxa2: 0.0442
cEBP: 0.0435
HMG-1: 0.0426
deltaEF1: 0.0399
ELK1: 0.0394
Agamous: 0.0384
E2F1: 0.0376
GAMYB: 0.0366
ESR1: 0.0352
Fos: 0.0333
Sox5: 0.0323
Gata1: 0.0321
MAX: 0.0312
Spz1: 0.031
Staf: 0.0293
Snail: 0.0293
FOXD1: 0.0279
YY1: 0.0279
SPIB: 0.0279
Broad-complex_2: 0.0263
NHLH1: 0.0218
ARR10: 0.0212
Ubx: 0.0211
CFI-USP: 0.0183
GATA2: 0.0182
FOXC1: 0.0177
FOXF2: 0.0168
NF-kappaB: 0.0167
TCF11-MafG: 0.0154
NR3C1: 0.0151
CREB1: 0.0149
HNF4: 0.0142
PPARG: 0.0117
Myb: 0.0116
ELK4: 0.0108
MYB.ph3: 0.00968
Athb-1: 0.00968
HLF: 0.00964
USF1: 0.00953
MYC-MAX: 0.00906
Prrx2: 0.00885
Sox17: 0.00879
Chop-cEBP: 0.00862
Mycn: 0.00805
NFIL3: 0.00787
IRF2: 0.00679
TEAD: 0.00581
RORA: 0.00522
NR2F1: 0.0043
ATHB5: 0.00364
TCF1: 0.00359
TAL1-TCF3: 0.00356
CF2-II: 0.0025
Ar: 0.00233
Pax6: 0.0021
Hox11-CTF1: 0.00152
RXR-VDR: 0.000911
SRF: 0.000843
bZIP910: 0.000688
Roaz: 0.000684
RORA1: 0.00019
T: 0.000118
TP53: 6.73e-05
bZIP911: 6.45e-05
NR1H2-RXR: 1.17e-06
PPARG-RXRA: 1.11e-06
CCTAAACCACAGGAGgggccacctccAAAAGAAAAGAGAAAACACtcttgtttgggaacaaaAGTGTGTGTGTGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTTTATTTAAAAACAAAACCACGTTAaaagagCTGCCCCTCCCCCACAGGCCCGACCACCCGccGGGAGTTTGCCAGGAAGAGgggcaattctgaatgggagtcgccaacgccccaCTGAGTGAAgcctgtctcggaaccgctcgcccagaccctggaggctccagacagccagctcccggaccccgcgcgcaaacgctgcggcgaaggaggggacccgggtaccgccagagccccgcagCGGCAGCAGCAGcgcggactccccggtCGCTGCCTCTcccagcccggcggcctgggCCGTCAATCAAGCtggccctgccccgccctcgggctgcagggGGCGGCCAATCAGAGCtaagctccgcagcgatgagctcagccggCTGGTTTCCCATTGGACGGCTATATTAAGAAAGTGGccGGACTCTTTAAATAG
Foxq1	435	445	-	6.1	tgtggtttagg
Myf	438	449	+	6.04	aaaccacaggag
RUNX1	439	447	-	8.04	cctgtggtt
Klf4	461	470	+	7.5	aaaagaaaag
HMG-IY	461	476	+	6.7	aaaagaaaagagaaaa
HMG-IY	462	477	+	8.25	aaagaaaagagaaaac
Evi1	463	476	+	7.77	aagaaaagagaaaa
HMG-IY	464	479	+	6.94	agaaaagagaaaacac
ID1	464	475	-	6.75	tttctcttttct
IRF1	466	477	+	6.75	aaaagagaaaac
RREB1	497	516	-	9.71	acacaccccacacacacact
RREB1	499	518	-	8.55	acacacaccccacacacaca
RREB1	501	520	-	7.13	acacacacaccccacacaca
RREB1	502	521	-	7.27	cacacacacaccccacacac
RREB1	503	522	-	6.97	acacacacacaccccacaca
RREB1	504	523	-	6.6	cacacacacacaccccacac
RREB1	505	524	-	6.25	acacacacacacaccccaca
RREB1	506	525	-	6.39	cacacacacacacaccccac
RREB1	508	527	-	7.77	cacacacacacacacacccc
RREB1	510	529	-	7.71	cacacacacacacacacacc
RREB1	512	531	-	8.04	cacacacacacacacacaca
RREB1	514	533	-	8.05	cacacacacacacacacaca
RREB1	516	535	-	8.12	cacacacacacacacacaca
RREB1	518	537	-	8.11	cacacacacacacacacaca
Pax4	520	549	-	6.73	aataaacagacacacacacacacacacaca
RREB1	520	539	-	8.13	cacacacacacacacacaca
HMG-IY	531	546	-	6.58	aaacagacacacacac
FOXI1	535	546	+	6.3	gtgtgtctgttt
HMG-IY	535	550	-	7.25	aaataaacagacacac
Foxq1	539	549	+	7.5	gtctgtttatt
Foxd3	539	550	+	8.85	gtctgtttattt
FOXI1	539	550	+	10.3	gtctgtttattt
Foxa2	539	550	+	7.68	gtctgtttattt
FOXF2	540	553	-	7.05	tttaaataaacaga
FOXD1	541	548	-	6.31	ataaacag
Broad-complex_4	544	554	-	6.07	ttttaaataaa
Broad-complex_1	548	561	+	8.45	tttaaaaacaaaac
Broad-complex_4	549	559	+	7.04	ttaaaaacaaa
IRF1	551	562	+	9.09	aaaaacaaaacc
SRY	551	559	+	6.34	aaaaacaaa
Broad-complex_3	552	562	+	7.24	aaaacaaaacc
MAX	559	568	+	6.26	aaccacgtta
Arnt	562	567	-	6.62	aacgtg
ZNF42_5-13	575	584	-	7.04	ggaggggcag
Klf4	579	588	-	6.75	tgggggaggg
ZNF42_1-4	582	587	-	6.48	ggggga
RREB1	583	602	+	6.78	cccccacaggcccgaccacc
Macho-1	596	604	-	6.25	cgggtggtc
RELA	607	616	+	6.46	gggagtttgc
GABPA	616	625	+	7.15	ccaggaagag
E74A	617	623	+	7.09	caggaag
SPI1	618	623	+	6.03	aggaag
Bapx1	659	667	+	7.2	ctgagtgaa
Myf	783	794	+	8.76	cggcagcagcag
ABI4	810	819	+	7.46	cgctgcctct
Pbx	839	850	+	9.83	ccgtcaatcaag
Fos	841	848	+	6.03	gtcaatca
Gfi	842	851	+	6.11	tcaatcaagc
GATA3	843	848	-	6.56	tgattg
NF-Y	881	896	+	10.6	ggcggccaatcagagc
Gfi	886	895	+	8.27	ccaatcagag
GATA3	887	892	-	6.18	tgattg
Dorsal_2	925	934	+	6.02	ctggtttccc
ZNF42_5-13	929	938	-	6.8	caatgggaaa
NF-Y	929	944	-	8.1	gccgtccaatgggaaa
SQUA	940	953	-	6.14	cttaatatagccgt
Agamous	943	953	-	6.04	cttaatatagc
AGL3	944	953	+	8.05	ctatattaag
AGL3	944	953	-	8.93	cttaatatag
MEF2A	944	953	+	9.16	ctatattaag
SQUA	944	957	+	10.8	ctatattaagaaag
TBP	944	958	+	7.23	ctatattaagaaagt
Broad-complex_3	945	955	+	6.92	tatattaagaa
FOXL1	945	952	-	8.11	ttaatata
cEBP	945	956	-	7.07	tttcttaatata
Broad-complex_1	946	959	+	8.12	atattaagaaagtg
Broad-complex_4	946	956	+	6.6	atattaagaaa
NFIL3	946	956	-	6.37	tttcttaatat
Nkx2-5	946	952	-	7.03	ttaatat
TBP	946	960	+	6.37	atattaagaaagtgg
Ubx	948	951	-	6.28	taat
MA0021	954	959	+	6.94	aaagtg
MNB1A	954	958	+	6.01	aaagt
PBF	954	958	+	6.43	aaagt
TBP	963	977	-	7.39	ctatttaaagagtcc
MNB1A	967	971	-	6.14	aaaga
AGL3	968	977	+	8.63	ctttaaatag
AGL3	968	977	-	7.76	ctatttaaag
MEF2A	968	977	-	10.8	ctatttaaag
FOXL1	969	976	+	7.2	tttaaata

Sequence file: seqs.txt (339 sequences)
Matrix file: /v/solaris9/appl/molbio/ClusterBuster/jaspar2005core.txt (123 matrices)
Expected gap: 35
Range for local abundances: 100
Lowercase filtering OFF
Pseudocount: 0.375
Cluster score threshold: 5
Motif score threshold: 6
