8

dir
458
https://picard.svn.sourceforge.net/svnroot/picard/trunk/src/java/net/sf/samtools
https://picard.svn.sourceforge.net/svnroot/picard



2010-06-21T14:29:16.940801Z
453
alecw
has-props

svn:special svn:externals svn:needs-lock











e7d7ca66-9cb8-402e-a9b0-1104c3ddb36d

SAMUtils.java
file




2010-06-22T13:42:46.000000Z
a5d2693661ae201adbfee8dc7a4e2852
2010-05-11T16:14:51.231819Z
398
tfenne

SAMFileSpan.java
file




2010-06-22T13:42:46.000000Z
a6093f14d69f2ae8c8248f5f410fa43f
2010-06-08T18:40:28.762279Z
434
alecw

CachingBAMFileIndex.java
file




2010-06-22T13:42:46.000000Z
c321eec9a17436dc2de0e4ddebba7178
2010-06-08T18:40:28.762279Z
434
alecw

SAMRecordComparator.java
file




2010-06-22T13:42:46.000000Z
33f262541dd0c9cbc952e6eb511ee18a
2010-03-10T20:01:33.092876Z
340
alecw

SAMProgramRecord.java
file




2010-06-22T13:42:46.000000Z
538a55b22a885240dc993c571affcec6
2010-03-11T00:12:29.606105Z
344
weisburd

FileTruncatedException.java
file




2010-06-22T13:42:46.000000Z
b527e1338ebe61471534514cf6629f81
2010-03-10T20:01:33.092876Z
340
alecw

example
dir

SAMTag.java
file




2010-06-22T13:42:46.000000Z
bc93388fe609e98923f5623919ab0e0a
2010-03-11T00:12:29.606105Z
344
weisburd

AbstractSAMHeaderRecord.java
file




2010-06-22T13:42:46.000000Z
204b6032b8b28bf39ea558b79671add2
2010-03-11T00:12:29.606105Z
344
weisburd

SAMTestUtil.java
file




2010-06-22T13:42:46.000000Z
b3340de8ee2b7ad9da0ccef1299be009
2010-03-10T20:01:33.092876Z
340
alecw

SAMRecordCoordinateComparator.java
file




2010-06-22T13:42:46.000000Z
15bc771998b61ff8a5f885e4a9a0714e
2010-03-10T20:01:33.092876Z
340
alecw

apps
dir

SAMReadGroupRecord.java
file




2010-06-22T13:42:46.000000Z
772eb169b0ed5bec81079a9864fa4d56
2010-03-11T00:12:29.606105Z
344
weisburd

BAMIndexTextWriter.java
file




2010-06-22T13:42:46.000000Z
1fe7726f8d9270bcadbb796d7029a24b
2010-06-17T18:45:38.328594Z
449
mborkan
has-props

SAMFileHeader.java
file




2010-06-22T13:42:46.000000Z
90b6277558275789d2321c622788863b
2010-05-04T20:42:27.683890Z
384
tfenne

SAMTextHeaderCodec.java
file




2010-06-22T13:42:46.000000Z
0fba86d7a22795da5a5df2d9d74a8af8
2010-05-04T20:42:27.683890Z
384
tfenne

BAMRecord.java
file




2010-06-22T13:42:46.000000Z
9fcd763f958adab44b18cae2a6bff6d9
2010-03-10T20:01:33.092876Z
340
alecw

SAMException.java
file




2010-06-22T13:42:46.000000Z
daf5c8ec647cc416e8b308951033b621
2010-03-10T20:01:33.092876Z
340
alecw

SAMFileWriterImpl.java
file




2010-06-22T13:42:46.000000Z
13bd73d7377378d6270e780fc02d8779
2010-06-11T19:10:43.599226Z
438
mborkan

SAMTools.java
file




2010-06-22T13:42:46.000000Z
04379f553ca1b0bba15a7f190a8453d1
2010-03-10T20:01:33.092876Z
340
alecw

SAMBinaryTagAndValue.java
file




2010-06-22T13:42:46.000000Z
0b0c79f4f2a6e5b5206fa86d87d7ff26
2010-03-10T20:01:33.092876Z
340
alecw

LinearIndex.java
file




2010-06-22T13:42:46.000000Z
692dd5f78d2822a415c01a41eb0499d3
2010-06-08T18:40:28.762279Z
434
alecw

SAMFileReader.java
file




2010-06-22T13:42:46.000000Z
88c04064c015bc458054a29df0ad24af
2010-06-08T18:40:28.762279Z
434
alecw

BinList.java
file




2010-06-22T13:42:46.000000Z
6c4e06326b63690a69ebff043f59405d
2010-06-08T18:40:28.762279Z
434
alecw

SAMValidationError.java
file




2010-06-22T13:42:46.000000Z
f130b618dd34fc9b058d62baa9e39246
2010-03-10T20:01:33.092876Z
340
alecw

SAMSequenceRecord.java
file




2010-06-22T13:42:46.000000Z
d9c0c1b347bb89ea10a5b457d81fdbf2
2010-03-10T20:01:33.092876Z
340
alecw

Chunk.java
file




2010-06-22T13:42:46.000000Z
efc848ef30f6646215a12421e0fcffeb
2010-06-08T18:40:28.762279Z
434
alecw

SAMSortOrderChecker.java
file




2010-06-22T13:42:46.000000Z
276de93dac4361801378821b07ce6f40
2010-03-10T20:01:33.092876Z
340
alecw

AbstractBAMFileIndex.java
file




2010-06-22T13:42:46.000000Z
d61e36922ad854e99c06aa8453bb43df
2010-06-17T18:45:38.328594Z
449
mborkan

SQTagUtil.java
file




2010-06-22T13:42:46.000000Z
b1627d4961f76c35f2125c93e613a52f
2010-03-10T20:01:33.092876Z
340
alecw

SAMRecordUtil.java
file




2010-06-22T13:42:46.000000Z
5ce256e2ce9ce82a7ae2253897d5eaa9
2010-03-10T20:01:33.092876Z
340
alecw

SAMFileWriter.java
file




2010-06-22T13:42:46.000000Z
756fcce81922aeec51cd7ce9c1df72b6
2010-03-10T20:01:33.092876Z
340
alecw

TextTagCodec.java
file




2010-06-22T13:42:46.000000Z
9057cdb71946b1bbcf6d00304142e934
2010-03-10T20:01:33.092876Z
340
alecw

BinaryTagCodec.java
file




2010-06-22T13:42:46.000000Z
99802695229a64775471bef2cc34bd63
2010-03-10T20:01:33.092876Z
340
alecw

BAMIndexContent.java
file




2010-06-22T13:42:46.000000Z
8c0784d631aecda5c4a61336bcf4e452
2010-06-11T19:09:40.290845Z
437
mborkan

BAMFileConstants.java
file




2010-06-22T13:42:46.000000Z
900e136c1e4b939095a4ae2d4f06e53b
2010-03-10T20:01:33.092876Z
340
alecw

util
dir

SAMRecordQueryNameComparator.java
file




2010-06-22T13:42:46.000000Z
6faa1a8996618ee6ad3e91a75672aa69
2010-03-10T20:01:33.092876Z
340
alecw

CigarOperator.java
file




2010-06-22T13:42:46.000000Z
0339d79cbcd90e6bfff7dddbe1a113b1
2010-03-10T20:01:33.092876Z
340
alecw

DiskBasedBAMFileIndex.java
file




2010-06-22T13:42:46.000000Z
0e1a6cf5389d9bd80f4a2a76422cfe5e
2010-06-11T19:09:40.290845Z
437
mborkan

SAMRecordSetBuilder.java
file




2010-06-22T13:42:46.000000Z
60cc81b06a4ee2135ab6187848ae2c00
2010-03-10T20:01:33.092876Z
340
alecw

FixBAMFile.java
file




2010-06-22T13:42:46.000000Z
282f6241c2138ddec7ae907b5c27fb0d
2010-03-10T20:01:33.092876Z
340
alecw
has-props

SAMRecord.java
file




2010-06-22T13:42:46.000000Z
5a4d1c0713e4a78046795b739f102e85
2010-06-08T18:40:28.762279Z
434
alecw

NotPrimarySkippingIterator.java
file




2010-06-22T13:42:46.000000Z
f21097cec5414a398cba4a62b61c3889
2010-03-10T20:01:33.092876Z
340
alecw

BAMFileIndexWriter.java
file




2010-06-22T13:42:46.000000Z
46da094882360e661702c246828b2e46
2010-06-17T18:45:38.328594Z
449
mborkan
has-props

BAMIndex.java
file




2010-06-22T13:42:46.000000Z
9f50b65fdbf7c3ac686d2a134a5c2880
2010-06-17T18:45:38.328594Z
449
mborkan

TextCigarCodec.java
file




2010-06-22T13:42:46.000000Z
a266cf58d9fe52d7f7db6e0b3c711a35
2010-03-10T20:01:33.092876Z
340
alecw
has-props

BinaryCigarCodec.java
file




2010-06-22T13:42:46.000000Z
c4730f5dfefe35ea72027a13aba69aee
2010-03-10T20:01:33.092876Z
340
alecw

AlignmentBlock.java
file




2010-06-22T13:42:46.000000Z
3a043e223fdbb38d27c835dd173a3597
2010-03-10T20:01:33.092876Z
340
alecw

BAMRecordCodec.java
file




2010-06-22T13:42:46.000000Z
b5cd68b726a630a74054f9adfb26d066
2010-03-10T20:01:33.092876Z
340
alecw

SAMSequenceDictionary.java
file




2010-06-22T13:42:46.000000Z
651e34a0ccfd6fd092647947750864ae
2010-03-10T20:01:33.092876Z
340
alecw

CigarElement.java
file




2010-06-22T13:42:46.000000Z
1cc29c388629a78bed48a9a18c0ea95d
2010-03-10T20:01:33.092876Z
340
alecw

SAMFileSource.java
file




2010-06-22T13:42:46.000000Z
df2670b076cef971ff6caf6c3e1d2f4b
2010-06-08T18:40:28.762279Z
434
alecw

SAMFileWriterFactory.java
file




2010-06-22T13:42:46.000000Z
a2067e9b008876ee83dca98402455cda
2010-03-10T20:01:33.092876Z
340
alecw

SAMTextReader.java
file




2010-06-22T13:42:46.000000Z
03648214b92d41dcbe12781718f819af
2010-06-08T18:40:28.762279Z
434
alecw

SAMFormatException.java
file




2010-06-22T13:42:46.000000Z
446434c2798eefb812e6285c691b96b7
2010-03-10T20:01:33.092876Z
340
alecw

Bin.java
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2010-06-22T13:42:46.000000Z
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2010-06-08T18:40:28.762279Z
434
alecw

SAMTagUtil.java
file




2010-06-22T13:42:46.000000Z
9d32ddd7d8f277314223887650e39b9f
2010-03-10T20:01:33.092876Z
340
alecw

SAMTextWriter.java
file




2010-06-22T13:42:46.000000Z
cef079aa041927db776cb6a4e0ca06fa
2010-03-10T20:01:33.092876Z
340
alecw

BAMFileReader.java
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2010-06-22T13:42:46.000000Z
a529f07603e3a1a81764fb5ab46a2fa6
2010-06-17T18:45:38.328594Z
449
mborkan

Cigar.java
file




2010-06-22T13:42:46.000000Z
86a3b8df150681d6adfe6defc8dc4bea
2010-03-10T20:01:33.092876Z
340
alecw

BAMFileWriter.java
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2010-06-22T13:42:46.000000Z
5086fc53c60d8fdcf25f276d9aa9bcb1
2010-06-12T00:43:40.956619Z
441
tfenne

BrowseableBAMIndex.java
file




2010-06-22T13:42:46.000000Z
34f2190079387edbb45eb542e590a2d5
2010-06-08T18:40:28.762279Z
434
alecw

