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END
DiskBasedBAMFileIndex.java
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END
CigarOperator.java
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END
SAMUtils.java
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END
SAMFileSpan.java
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END
SAMRecordSetBuilder.java
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END
CachingBAMFileIndex.java
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END
FixBAMFile.java
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END
SAMProgramRecord.java
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END
SAMRecordComparator.java
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END
FileTruncatedException.java
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END
AbstractSAMHeaderRecord.java
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END
SAMTag.java
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END
SAMTestUtil.java
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END
SAMRecord.java
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END
SAMRecordCoordinateComparator.java
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END
NotPrimarySkippingIterator.java
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END
BAMFileIndexWriter.java
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END
BAMIndex.java
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END
BinaryCigarCodec.java
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END
SAMReadGroupRecord.java
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END
TextCigarCodec.java
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END
SAMFileHeader.java
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END
AlignmentBlock.java
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/AlignmentBlock.java
END
BAMIndexTextWriter.java
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END
BAMRecordCodec.java
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END
SAMTextHeaderCodec.java
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END
BAMRecord.java
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END
SAMSequenceDictionary.java
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END
SAMException.java
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END
CigarElement.java
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/CigarElement.java
END
SAMFileWriterImpl.java
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END
SAMFileSource.java
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END
SAMBinaryTagAndValue.java
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END
SAMTools.java
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END
LinearIndex.java
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END
SAMFileReader.java
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END
BinList.java
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END
SAMFileWriterFactory.java
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END
SAMValidationError.java
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END
Chunk.java
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END
Bin.java
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END
SAMFormatException.java
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END
SAMSequenceRecord.java
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END
SAMTextReader.java
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END
SAMSortOrderChecker.java
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END
SAMTagUtil.java
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END
AbstractBAMFileIndex.java
K 25
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END
SAMFileWriter.java
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END
SAMRecordUtil.java
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END
SQTagUtil.java
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END
BinaryTagCodec.java
K 25
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/BinaryTagCodec.java
END
TextTagCodec.java
K 25
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/TextTagCodec.java
END
BAMFileReader.java
K 25
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END
BAMIndexContent.java
K 25
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/svnroot/picard/!svn/ver/437/trunk/src/java/net/sf/samtools/BAMIndexContent.java
END
SAMTextWriter.java
K 25
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/SAMTextWriter.java
END
Cigar.java
K 25
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/svnroot/picard/!svn/ver/340/trunk/src/java/net/sf/samtools/Cigar.java
END
BAMFileConstants.java
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END
BAMFileWriter.java
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/svnroot/picard/!svn/ver/441/trunk/src/java/net/sf/samtools/BAMFileWriter.java
END
BrowseableBAMIndex.java
K 25
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/svnroot/picard/!svn/ver/434/trunk/src/java/net/sf/samtools/BrowseableBAMIndex.java
END
SAMRecordQueryNameComparator.java
K 25
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END
