
This version of Weeder supports a maximum number of 100000 input sequences. In case you want to run the program on a large set, just edit the line

#define MAXSEQ 100000

that appears at the top of the

adviser.c
locator.c
weederTFBS.c

source files in the "Sources" directory replacing 100000 with a number large enough to accomodate all your input (but do not use insanely large numbers - it won't work, if you have 150000 sequences, write 150000!), and re-run the "./compileall" script.

