Fst                     F-Statistics
MMD                     Mismatch Distribution
R2.test                 Ramos-Onsins-Rozas Test of Neutrality
amova                   Analysis of Molecular Variance
as.loci                 Conversion Among Allelic Data Classes
bind.loci               Bind Loci Objects
edit.loci               Edit Allelic Data with R's Data Editor
getPloidy               Utily Functions for pegas
haploNet                Haplotype Networks
haplotype               Haplotype Extraction and Frequencies
heterozygosity          Heterozygosity at a Locus Using Gene
                        Frequencies
hw.test                 Test of Hardy-Weinberg Equilibrium
nuc.div                 Nucleotide Diversity
pegas-package           Population and Evolutionary Genetics Analysis
                        System
read.gtx                Read Genetix Data Files
read.loci               Read Allelic Data Files
rr.test                 Tajima Relative Rate Test of Molecular Clock
site.spectrum           Site Frequency Spectrum
summary.loci            Print and Summaries of Loci Objects
tajima.test             Test of the Neutral Mutation Hypothesis
theta.h                 Population Parameter THETA using Homozygosity
theta.k                 Population Parameter THETA using Expected
                        Number of Alleles
theta.s                 Population Parameter THETA using Segregating
                        Sites
theta.tree              Population Parameter THETA Using Genealogy
write.loci              Write Allelic Data Files
